Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001772

Physical Location & Seq

Genomic Coordinates Reverse (-)

68346713 .. 68349051

Gene Structure 2339 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 804 bp

ATGAATCAGGCTATGTTAGCCAAAGCTGGATGGAGGCTTTTCCAAAATAATTCTGGATTGTGGGCTACTGTTTATAAGGATAAGTACTTGTCTCATGACAATCTTTTTTATGCTAATTATCAAATTCCTAAAGACTGTTCTAGTACTTGGCGAAGTGTTGTTCATGGTGCGAGTCTTTTAAAACAAGGGCTTACTTGGAGAGTTGGAGATGGTAAGAGAATTAAATTTTGGATTCATATTTGGCTGCCTCCTCTTGCTCTTATTAATTATATTCATCATGATGTTGAAATTGAAATAAATGCTACAATTTGCTCCTTTTGGAATGAGAATGGCTGGAACATCAACTTTTTATATTCTTATTTCCCTGATGATATTGTTAGTCGAATTCTGCATACTCCTCCTGGCTTTGATGGATGTGGTGAAGATATCCAGATATGGAACTACACCACTAATGGAGACTTTTCTGTCAAATCTGCGCACAACATTTTCTTTGATACTTATGATCAGCATCATTCTCCTTGGAAATTCATATGGAAAATGCACATACCTCCCAAACTTAAAACCTTTACTTGGGTGCTTTGCCATGGTAAGTTACTTACTAATGTTCAAAGGGTCAGAAGGCACTTTTCTTTTGATGACTCTTGTCCTCTTTGTCATTCTGCTAGTGAATCTCTTGTTCATCTCTTTAGAGATTACCCTTGTGTTCAAAATTTTGAACACAAGGGCTTCAAAATATTTGGAATTCTTTCACTTTACCTAACTCTGTTCTTCGTACCTCGAACTTGTATTGGAATGCTTGGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RVT_3 zf-RVT

Protein Analysis

267

Amino Acids

31.29

Weight (kDa)

8.56

Isoelectric Point (pI)

40.83

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-RVT	PF13966	154 - 231	3.6e-17	zinc-binding in reverse transcriptase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001772)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g04886 FvH4_2g12003 FvH4_5g27492
rosa_chinensis	RchiOBHm_Chr1g0382551 RchiOBHm_Chr1g0384551
rosa_laevigata	RLG00000002160
rosa_multiflora	Rmu_co8264107.1_g000001 Rmu_co8333359.1_g000001 Rmu_sc0000295.1_g000023 Rmu_sc0000657.1_g000002 Rmu_sc0000935.1_g000036 Rmu_sc0001150.1_g000003 Rmu_sc0001484.1_g000025 Rmu_sc0001512.1_g000020 Rmu_sc0001618.1_g000002 Rmu_sc0001809.1_g000022 Rmu_sc0002354.1_g000044 Rmu_sc0002522.1_g000061 Rmu_sc0004175.1_g000004 Rmu_sc0004200.1_g000003 Rmu_sc0004569.1_g000010 Rmu_sc0005950.1_g000002 Rmu_sc0006862.1_g000009 Rmu_sc0007977.1_g000017 Rmu_sc0008049.1_g000020 Rmu_sc0008752.1_g000003 Rmu_sc0009440.1_g000002 Rmu_sc0009969.1_g000003 Rmu_sc0010108.1_g000001 Rmu_sc0010822.1_g000003 Rmu_sc0010883.1_g000006 Rmu_sc0017237.1_g000001 Rmu_sc0018807.1_g000013 Rmu_sc0027036.1_g000002 Rmu_sc0033849.1_g000001 Rmu_ssc0000387.1_g000008
rosa_roxburghii	Rroxscaffold_2G00087680 Rroxscaffold_3G00224640 Rroxscaffold_7G00179230
rosa_rugosa	Rorug01G0040100 Rorug01G0390700 Rorug02G0557500 Rorug03G0004200 Rorug04G0040100 Rorug07G0095000 Rorug07G0277300
rosa_samantha	Rh5BG202500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	75
AasI	GACNNNNNNGTC	1 cut(s)	464
Acc16I	TGCGCA	1 cut(s)	477
AcsI	RAATTY	6 cut(s)	123, 224, 384, 524, 709, 741
AfaI	GTAC	3 cut(s)	86, 145, 774
AfiI	CCNNNNNNNGG	1 cut(s)	570
AgsI	TTSAA	6 cut(s)	287, 293, 608, 707, 716, 730
AjnI	CCWGG	1 cut(s)	400
AjuI	GAANNNNNNNTTGG	2 cut(s)	211, 243
AluBI	AGCT	1 cut(s)	26
AluI	AGCT	1 cut(s)	26
Alw26I	GTCTC	2 cut(s)	96, 450
ApeKI	GCWGC	1 cut(s)	244
ApoI	RAATTY	6 cut(s)	123, 224, 384, 524, 709, 741
AseI	ATTAAT	1 cut(s)	264
Asp700I	GAANNNNTTC	1 cut(s)	745
AspLEI	GCGC	1 cut(s)	478
AsuHPI	GGTGA	1 cut(s)	431
BbvI	GCAGC	1 cut(s)	231
BccI	CCATC	3 cut(s)	24, 203, 404
BciT130I	CCWGG	1 cut(s)	402
BclI	TGATCA	1 cut(s)	502
BcoDI	GTCTC	2 cut(s)	96, 450
BfaI	CTAG	2 cut(s)	141, 663
BisI	GCNGC	1 cut(s)	245
BlsI	GCNGC	1 cut(s)	246
BmcAI	AGTACT	2 cut(s)	86, 145
Bme1390I	CCNGG	1 cut(s)	402
BmrFI	CCNGG	1 cut(s)	402
BmsI	GCATC	1 cut(s)	517
BoxI	GACNNNNGTC	1 cut(s)	642
BsaBI	GATNNNNATC	1 cut(s)	507
BsaJI	CCNNGG	2 cut(s)	518, 583
Bsc4I	CCNNNNNNNGG	1 cut(s)	570
Bse8I	GATNNNNATC	1 cut(s)	507
BseBI	CCWGG	1 cut(s)	402
BseDI	CCNNGG	2 cut(s)	518, 583
BseGI	GGATG	2 cut(s)	35, 419
BseJI	GATNNNNATC	1 cut(s)	507
BseLI	CCNNNNNNNGG	1 cut(s)	570
BseRI	GAGGAG	2 cut(s)	240, 387
BseXI	GCAGC	1 cut(s)	231
BslI	CCNNNNNNNGG	1 cut(s)	570
BsmAI	GTCTC	2 cut(s)	96, 450
BsmI	GAATGC	1 cut(s)	798
Bsp143I	GATC	1 cut(s)	502
Bsp19I	CCATGG	1 cut(s)	583
BspHI	TCATGA	2 cut(s)	94, 277
BssECI	CCNNGG	2 cut(s)	518, 583
BssMI	GATC	1 cut(s)	502
BssT1I	CCWWGG	2 cut(s)	518, 583
Bst2UI	CCWGG	1 cut(s)	402
Bst4CI	ACNGT	2 cut(s)	70, 137
BstDSI	CCRYGG	1 cut(s)	583
BstF5I	GGATG	2 cut(s)	35, 419
BstHHI	GCGC	1 cut(s)	478
BstKTI	GATC	1 cut(s)	505
BstMAI	GTCTC	2 cut(s)	96, 450
BstMBI	GATC	1 cut(s)	502
BstMWI	GCNNNNNNNGC	1 cut(s)	17
BstNI	CCWGG	1 cut(s)	402
BstPAI	GACNNNNGTC	1 cut(s)	642
BstSCI	CCNGG	1 cut(s)	400
BstV1I	GCAGC	1 cut(s)	231
BtgI	CCRYGG	1 cut(s)	583
BtsCI	GGATG	2 cut(s)	35, 419
CciI	TCATGA	2 cut(s)	94, 277
CfoI	GCGC	1 cut(s)	478
Csp6I	GTAC	3 cut(s)	85, 144, 773
CviAII	CATG	4 cut(s)	95, 164, 278, 584
CviQI	GTAC	3 cut(s)	85, 144, 773
DpnI	GATC	1 cut(s)	504
DpnII	GATC	1 cut(s)	502
DraI	TTTAAA	1 cut(s)	180
DrdI	GACNNNNNNGTC	1 cut(s)	464
DseDI	GACNNNNNNGTC	1 cut(s)	464
Eco130I	CCWWGG	2 cut(s)	518, 583
Eco32I	GATATC	1 cut(s)	427
EcoRI	GAATTC	2 cut(s)	384, 741
EcoRII	CCWGG	1 cut(s)	400
EcoRV	GATATC	1 cut(s)	427
EcoT14I	CCWWGG	2 cut(s)	518, 583
ErhI	CCWWGG	2 cut(s)	518, 583
FaeI	CATG	4 cut(s)	98, 167, 281, 587
FatI	CATG	4 cut(s)	94, 163, 277, 583
FauNDI	CATATG	1 cut(s)	530
FbaI	TGATCA	1 cut(s)	502
Fnu4HI	GCNGC	1 cut(s)	245
FokI	GGATG	2 cut(s)	42, 426
Fsp4HI	GCNGC	1 cut(s)	245
FspBI	CTAG	2 cut(s)	141, 663
FspI	TGCGCA	1 cut(s)	477
GlaI	GCGC	1 cut(s)	477
GluI	GCNGC	1 cut(s)	245
HhaI	GCGC	1 cut(s)	478
Hin1II	CATG	4 cut(s)	98, 167, 281, 587
Hin6I	GCGC	1 cut(s)	476
HinP1I	GCGC	1 cut(s)	476
HinfI	GANTC	5 cut(s)	4, 172, 232, 638, 668
HphI	GGTGA	1 cut(s)	431
Hpy188I	TCNGA	1 cut(s)	617
Hpy188III	TCNNGA	4 cut(s)	54, 95, 278, 430
HpyAV	CCTTC	1 cut(s)	612
HpyCH4III	ACNGT	2 cut(s)	70, 137
HpyCH4V	TGCA	2 cut(s)	391, 541
HpyF10VI	GCNNNNNNNGC	1 cut(s)	17
Hsp92II	CATG	4 cut(s)	98, 167, 281, 587
HspAI	GCGC	1 cut(s)	476
Ksp22I	TGATCA	1 cut(s)	502
Kzo9I	GATC	1 cut(s)	502
LmnI	GCTCC	1 cut(s)	317
LpnPI	CCDG	7 cut(s)	12, 39, 319, 378, 387, 414, 443
Lsp1109I	GCAGC	1 cut(s)	231
LweI	GCATC	1 cut(s)	517
MaeI	CTAG	2 cut(s)	141, 663
MaeIII	GTNAC	1 cut(s)	591
MalI	GATC	1 cut(s)	504
MboI	GATC	1 cut(s)	502
MboII	GAAGA	2 cut(s)	434, 760
MlyI	GAGTC	2 cut(s)	181, 632
MmeI	TCCRAC	1 cut(s)	184
MnlI	CCTC	7 cut(s)	27, 258, 261, 408, 558, 657, 786
MroXI	GAANNNNTTC	1 cut(s)	745
MseI	TTAA	4 cut(s)	179, 222, 264, 558
MslI	CAYNNNNRTG	1 cut(s)	279
MspR9I	CCNGG	1 cut(s)	402
Mva1269I	GAATGC	1 cut(s)	798
MvaI	CCWGG	1 cut(s)	402
MwoI	GCNNNNNNNGC	1 cut(s)	17
NcoI	CCATGG	1 cut(s)	583
NdeI	CATATG	1 cut(s)	530
NdeII	GATC	1 cut(s)	502
NlaIII	CATG	4 cut(s)	98, 167, 281, 587
NsbI	TGCGCA	1 cut(s)	477
PagI	TCATGA	2 cut(s)	94, 277
PctI	GAATGC	1 cut(s)	798
PdmI	GAANNNNTTC	1 cut(s)	745
PfeI	GAWTC	3 cut(s)	4, 232, 668
PkrI	GCNGC	1 cut(s)	246
PleI	GAGTC	2 cut(s)	180, 632
PpsI	GAGTC	2 cut(s)	180, 632
PshAI	GACNNNNGTC	1 cut(s)	642
PshBI	ATTAAT	1 cut(s)	264
PsiI	TTATAA	1 cut(s)	75
Psp6I	CCWGG	1 cut(s)	400
PspGI	CCWGG	1 cut(s)	400
RsaI	GTAC	3 cut(s)	86, 145, 774
RsaNI	GTAC	3 cut(s)	85, 144, 773
RseI	CAYNNNNRTG	1 cut(s)	279
SaqAI	TTAA	4 cut(s)	179, 222, 264, 558
SatI	GCNGC	1 cut(s)	245
Sau3AI	GATC	1 cut(s)	502
ScaI	AGTACT	2 cut(s)	86, 145
SchI	GAGTC	2 cut(s)	181, 632
ScrFI	CCNGG	1 cut(s)	402
SetI	ASST	5 cut(s)	28, 550, 566, 759, 778
SfaNI	GCATC	1 cut(s)	517
SmiMI	CAYNNNNRTG	1 cut(s)	279
SspI	AATATT	1 cut(s)	735
SspMI	CTAG	2 cut(s)	141, 663
StyD4I	CCNGG	1 cut(s)	400
StyI	CCWWGG	2 cut(s)	518, 583
TaaI	ACNGT	2 cut(s)	70, 137
TaqI	TCGA	2 cut(s)	382, 778
TatI	WGTACW	2 cut(s)	84, 143
TfiI	GAWTC	3 cut(s)	4, 232, 668
Tru1I	TTAA	4 cut(s)	179, 222, 264, 558
Tru9I	TTAA	4 cut(s)	179, 222, 264, 558
TseI	GCWGC	1 cut(s)	244
TspDTI	ATGAA	6 cut(s)	17, 152, 224, 263, 517, 668
VspI	ATTAAT	1 cut(s)	264
XapI	RAATTY	6 cut(s)	123, 224, 384, 524, 709, 741
XcmI	CCANNNNNNNNNTGG	1 cut(s)	50
XmnI	GAANNNNTTC	1 cut(s)	745
XspI	CTAG	2 cut(s)	141, 663
ZrmI	AGTACT	2 cut(s)	86, 145

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.