RchiOBHm_Chr1g0372821
ERF Family

Belongs to the protein kinase superfamily. Ser Thr protein kinase family

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
Physical Location & Seq
Forward (+)
61352460 .. 61357168
4709 bp
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UTR
Exon/CDS
Intron
PRQ59679

Sequence Viewer

Length: 240 bp
ATGTCTAATGGCAGTGTGGCTTCTCGTGTCAAAGGGAAACCAGTGTTGGATTGGGGAACTAGGAAACTAATTTCCTTGGGAGCTGCAAGAGGATCGTTATACCTTCATAAGCAGTGTGACCCGAAAATTATCCACAAGGATGTGAAGGTAGCAAATGTACTTCTTGATGACTATTGTGAAGCCGTGGTTGGAGATTTTGATTTGGCAAAGCTTTTGGATCACCAAGTGTTCTGTGGTTAA

Protein Analysis

79

Amino Acids

8.62

Weight (kDa)

8.51

Isoelectric Point (pI)

16.35

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pkinase PF00069 1 - 75 1.1e-07 Protein kinase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 100, 225
AdeI CACNNNGTG 1 cut(s) 226
AfaI GTAC 1 cut(s) 159
AjuI GAANNNNNNNTTGG 4 cut(s) 29, 61, 171, 203
AluBI AGCT 2 cut(s) 83, 211
AluI AGCT 2 cut(s) 83, 211
AlwI GGATC 2 cut(s) 100, 225
ApeKI GCWGC 1 cut(s) 83
AsuHPI GGTGA 1 cut(s) 212
BauI CACGAG 1 cut(s) 24
BbvI GCAGC 1 cut(s) 70
BceAI ACGGC 1 cut(s) 167
BcgI CGANNNNNNTGC 2 cut(s) 75, 109
BfaI CTAG 1 cut(s) 60
BisI GCNGC 1 cut(s) 84
BlsI GCNGC 1 cut(s) 85
BsaJI CCNNGG 2 cut(s) 75, 183
Bse1I ACTGG 1 cut(s) 41
BseDI CCNNGG 2 cut(s) 75, 183
BseGI GGATG 1 cut(s) 145
BseNI ACTGG 1 cut(s) 41
BseXI GCAGC 1 cut(s) 70
Bsp143I GATC 2 cut(s) 92, 217
BspPI GGATC 2 cut(s) 100, 225
BsrI ACTGG 1 cut(s) 41
BssECI CCNNGG 2 cut(s) 75, 183
BssMI GATC 2 cut(s) 92, 217
BssSI CACGAG 1 cut(s) 24
BssT1I CCWWGG 1 cut(s) 75
Bst2BI CACGAG 1 cut(s) 24
BstDSI CCRYGG 1 cut(s) 183
BstF5I GGATG 1 cut(s) 145
BstKTI GATC 2 cut(s) 95, 220
BstMBI GATC 2 cut(s) 92, 217
BstV1I GCAGC 1 cut(s) 70
BtgI CCRYGG 1 cut(s) 183
BtsCI GGATG 1 cut(s) 145
BtsI GCAGTG 2 cut(s) 19, 119
BtsIMutI CAGTG 3 cut(s) 19, 48, 119
Csp6I GTAC 1 cut(s) 158
CviJI RGCY 4 cut(s) 20, 83, 182, 211
CviKI_1 RGCY 4 cut(s) 20, 83, 182, 211
CviQI GTAC 1 cut(s) 158
DpnI GATC 2 cut(s) 94, 219
DpnII GATC 2 cut(s) 92, 217
DraIII CACNNNGTG 1 cut(s) 226
Eco130I CCWWGG 1 cut(s) 75
EcoT14I CCWWGG 1 cut(s) 75
ErhI CCWWGG 1 cut(s) 75
FaiI YATR 2 cut(s) 100, 108
Fnu4HI GCNGC 1 cut(s) 84
FokI GGATG 1 cut(s) 152
Fsp4HI GCNGC 1 cut(s) 84
FspBI CTAG 1 cut(s) 60
GluI GCNGC 1 cut(s) 84
HindIII AAGCTT 1 cut(s) 209
HphI GGTGA 1 cut(s) 212
Hpy188III TCNNGA 1 cut(s) 164
HpyAV CCTTC 2 cut(s) 113, 139
HpyCH4V TGCA 1 cut(s) 86
Kzo9I GATC 2 cut(s) 92, 217
LmnI GCTCC 1 cut(s) 80
LpnPI CCDG 1 cut(s) 54
Lsp1109I GCAGC 1 cut(s) 70
MaeI CTAG 1 cut(s) 60
MaeIII GTNAC 1 cut(s) 116
MalI GATC 2 cut(s) 94, 219
MboI GATC 2 cut(s) 92, 217
MluCI AATT 2 cut(s) 69, 126
MmeI TCCRAC 2 cut(s) 27, 169
MnlI CCTC 1 cut(s) 83
MseI TTAA 1 cut(s) 238
MslI CAYNNNNRTG 1 cut(s) 138
NdeII GATC 2 cut(s) 92, 217
NmuCI GTSAC 1 cut(s) 116
PkrI GCNGC 1 cut(s) 85
RsaI GTAC 1 cut(s) 159
RsaNI GTAC 1 cut(s) 158
RseI CAYNNNNRTG 1 cut(s) 138
SaqAI TTAA 1 cut(s) 238
SatI GCNGC 1 cut(s) 84
Sau3AI GATC 2 cut(s) 92, 217
SetI ASST 4 cut(s) 85, 105, 150, 213
SmiMI CAYNNNNRTG 1 cut(s) 138
Sse9I AATT 2 cut(s) 69, 126
SspMI CTAG 1 cut(s) 60
StyI CCWWGG 1 cut(s) 75
TasI AATT 2 cut(s) 69, 126
TatI WGTACW 1 cut(s) 157
Tru1I TTAA 1 cut(s) 238
Tru9I TTAA 1 cut(s) 238
TscAI CASTG 3 cut(s) 19, 48, 119
TseFI GTSAC 1 cut(s) 116
TseI GCWGC 1 cut(s) 83
Tsp45I GTSAC 1 cut(s) 116
TspDTI ATGAA 1 cut(s) 95
TspRI CASTG 3 cut(s) 19, 48, 119
XcmI CCANNNNNNNNNTGG 2 cut(s) 48, 230
XspI CTAG 1 cut(s) 60
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.