RchiOBHm_Chr7g0231021

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0001411
Physical Location & Seq
Reverse (-)
54684402 .. 54687277
2876 bp
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UTR
Exon/CDS
Intron
PRQ20701

Sequence Viewer

Length: 201 bp
ATGGTTTATTCTCTCTATGCGCCGAAGCTTAAGACCGCCTTCAGAACTAGGTCAAGCTCGGGAATTGATTCATCTACAAGTACTATATCCCTATTCAATAGGGCCTACGTTTTATTAGGATTTCAGTTGGCTCTGGAAATTTTCAATTTGGGTTTGTTGGGTATGATTGGGTTTGGGTTTTATTCCAGTCTGAAATTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

66

Amino Acids

7.31

Weight (kDa)

9.87

Isoelectric Point (pI)

39.17

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 36
AcsI RAATTY 2 cut(s) 138, 194
AcuI CTGAAG 1 cut(s) 25
AfaI GTAC 1 cut(s) 82
AflII CTTAAG 1 cut(s) 29
AgsI TTSAA 2 cut(s) 97, 145
AluBI AGCT 2 cut(s) 28, 57
AluI AGCT 2 cut(s) 28, 57
Ama87I CYCGRG 1 cut(s) 58
AoxI GGCC 1 cut(s) 102
ApoI RAATTY 2 cut(s) 138, 194
Asp700I GAANNNNTTC 1 cut(s) 67
AspLEI GCGC 1 cut(s) 22
AspS9I GGNCC 1 cut(s) 102
AvaI CYCGRG 1 cut(s) 58
BfaI CTAG 1 cut(s) 48
BfrI CTTAAG 1 cut(s) 29
BmcAI AGTACT 1 cut(s) 82
BmeT110I CYCGRG 1 cut(s) 58
BmgT120I GGNCC 1 cut(s) 102
Bse1I ACTGG 1 cut(s) 186
BseNI ACTGG 1 cut(s) 186
BshFI GGCC 1 cut(s) 104
BsiHKCI CYCGRG 1 cut(s) 58
BsnI GGCC 1 cut(s) 104
BsoBI CYCGRG 1 cut(s) 58
BspACI CCGC 1 cut(s) 36
BspANI GGCC 1 cut(s) 104
BspTI CTTAAG 1 cut(s) 29
BsrI ACTGG 1 cut(s) 186
BstAFI CTTAAG 1 cut(s) 29
BstHHI GCGC 1 cut(s) 22
BsuRI GGCC 1 cut(s) 104
CfoI GCGC 1 cut(s) 22
Cfr13I GGNCC 1 cut(s) 102
Csp6I GTAC 1 cut(s) 81
CviJI RGCY 4 cut(s) 28, 57, 104, 131
CviKI_1 RGCY 4 cut(s) 28, 57, 104, 131
CviQI GTAC 1 cut(s) 81
Eco57I CTGAAG 1 cut(s) 25
Eco88I CYCGRG 1 cut(s) 58
EcoO109I RGGNCCY 1 cut(s) 102
FaiI YATR 3 cut(s) 18, 86, 164
FalI AAGNNNNNCTT 2 cut(s) 23, 55
FspBI CTAG 1 cut(s) 48
GlaI GCGC 1 cut(s) 21
HaeIII GGCC 1 cut(s) 104
HhaI GCGC 1 cut(s) 22
Hin6I GCGC 1 cut(s) 20
HinP1I GCGC 1 cut(s) 20
HindIII AAGCTT 1 cut(s) 26
HinfI GANTC 1 cut(s) 68
Hpy188I TCNGA 2 cut(s) 44, 192
Hpy188III TCNNGA 2 cut(s) 60, 134
HpyAV CCTTC 1 cut(s) 49
HpyCH4IV ACGT 1 cut(s) 108
HpySE526I ACGT 1 cut(s) 108
HspAI GCGC 1 cut(s) 20
LpnPI CCDG 1 cut(s) 119
MaeI CTAG 1 cut(s) 48
MaeII ACGT 1 cut(s) 108
MluCI AATT 4 cut(s) 63, 138, 145, 194
MroXI GAANNNNTTC 1 cut(s) 67
MseI TTAA 1 cut(s) 30
MspCI CTTAAG 1 cut(s) 29
PdmI GAANNNNTTC 1 cut(s) 67
PfeI GAWTC 1 cut(s) 68
PspPI GGNCC 1 cut(s) 102
RsaI GTAC 1 cut(s) 82
RsaNI GTAC 1 cut(s) 81
SaqAI TTAA 1 cut(s) 30
Sau96I GGNCC 1 cut(s) 102
ScaI AGTACT 1 cut(s) 82
SetI ASST 4 cut(s) 30, 53, 59, 111
SgeI CNNG 6 cut(s) 60, 66, 70, 72, 90, 146
SmlI CTYRAG 1 cut(s) 29
SmoI CTYRAG 1 cut(s) 29
Sse9I AATT 4 cut(s) 63, 138, 145, 194
SsiI CCGC 1 cut(s) 36
SspMI CTAG 1 cut(s) 48
TaiI ACGT 1 cut(s) 111
TasI AATT 4 cut(s) 63, 138, 145, 194
TatI WGTACW 1 cut(s) 80
TfiI GAWTC 1 cut(s) 68
Tru1I TTAA 1 cut(s) 30
Tru9I TTAA 1 cut(s) 30
TspDTI ATGAA 1 cut(s) 60
Vha464I CTTAAG 1 cut(s) 29
XapI RAATTY 2 cut(s) 138, 194
XmnI GAANNNNTTC 1 cut(s) 67
XspI CTAG 1 cut(s) 48
ZrmI AGTACT 1 cut(s) 82
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.