Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1C

Orthogroup ID

OG0001411

Physical Location & Seq

Genomic Coordinates Forward (+)

3615142 .. 3635184

Gene Structure 20043 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1CG021400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 681 bp

ATGCCTTCAAAACTAGGTCAAGCTCGGGAATTGATTCATCTACAGGTGCGACTCCGCCTCTCTGGCTCCCTCCCTCTGTTCTCGCGGCTCTCTGTAAGACTGCAACTCCGCCTCTCTGTCTCTCTCCTTCACAATCGGTCTTCCTCACCTCTGCGGCTCTTCCTCTCAGCTCTCACTCTTGACCCTCGGTGTCAGCAAATCCAATCTCCTCTCCAGAACCCTCAACGTCGATGTAGCTGGCCAATCGGTCATCAAGGCCCAGATTTAGGACACTTTTGGCCAAGAAAGGTCAGCTTTCTGAATATTAATGGTTTCGGTTTGAAGAGCAGTAAGAAACCCAAATCAAAGACTCCGGCAAAGAAGCCCAAAGACAGTGTTCTTGAGCAGAAATCTCCAGCTGAGTTCTTCGCTGAGAACAAGAACATTGCTGGATTTGGTAATGTTATGGCTCCTTCAAAGACATTGGCTACCTCAAGAGCAAAAGAAAATATTCTTAAGGCATTGAGAGCTACAAGAGCGAGCGCAAAGAAGCGTTTGGAGTTAGAGGTTGAAGTTCAGGAGAAAGTACAAGAAGAAAATATTGTGAAGCTGCCGGTGGAAGAACCAGTGGCTATAGAGGTTGAAGAAAAGGCTATTCAGTTGGTGGAAGTCACACAACAGATCAAAGAGAAAGCTCCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000902 GO:0003674 GO:0003735 GO:0003824 GO:0003916 GO:0003918 GO:0005198 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006412 GO:0006518 GO:0006725 GO:0006807 GO:0007049 GO:0007275 GO:0007389 GO:0008094 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009330 GO:0009653 GO:0009719 GO:0009725 GO:0009741 GO:0009888 GO:0009987 GO:0010026 GO:0010033 GO:0010467 GO:0014070 GO:0015935 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016853 GO:0016887 GO:0017111 GO:0019538 GO:0022402 GO:0022613 GO:0030154 GO:0032501 GO:0032502 GO:0032989 GO:0032991 GO:0033993 GO:0034641 GO:0034645 GO:0042023 GO:0042221 GO:0042254 GO:0042623 GO:0042802 GO:0042803 GO:0043043 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043603 GO:0043604 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044446 GO:0044464 GO:0044786 GO:0046483 GO:0046983 GO:0048856 GO:0048869 GO:0050896 GO:0061505 GO:0071704 GO:0071840 GO:0090304 GO:0090558 GO:0140097 GO:1901360 GO:1901564 GO:1901566 GO:1901576 GO:1901700 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HATPase_c HATPase_c_3 Topo-VIb_trans

Protein Analysis

226

Amino Acids

25.36

Weight (kDa)

10.23

Isoelectric Point (pI)

63.22

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001411)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0372821 RchiOBHm_Chr2g0120391 RchiOBHm_Chr3g0472751 RchiOBHm_Chr5g0036011 RchiOBHm_Chr6g0269661 RchiOBHm_Chr7g0231021
rosa_laevigata	RLG00000000534 RLG00000003816
rosa_multiflora	Rmu_sc0000084.1_g000050 Rmu_sc0001493.1_g000009 Rmu_sc0001851.1_g000026 Rmu_sc0003198.1_g000001 Rmu_sc0003198.1_g000002 Rmu_sc0004226.1_g000003 Rmu_sc0005738.1_g000004 Rmu_sc0006380.1_g000004 Rmu_sc0012041.1_g000003 Rmu_sc0017397.1_g000001
rosa_roxburghii	Rroxscaffold_4G00313360
rosa_rugosa	Rorug03G0325800 Rorug04G0073800 Rorug06G0052600
rosa_samantha	Rh1CG021400 Rh2CG235800 Rh2DG107900 Rh3AG180200 Rh3BG065800 Rh3BG206400 Rh3CG064500 Rh3CG203500 Rh3CG221800 Rh3CG270900 Rh3DG065700 Rh3DG132500 Rh3DG266800 Rh4AG242700 Rh4BG140300 Rh4BG140400 Rh4CG033900 Rh5AG093800 Rh5BG377400 Rh5BG426700 Rh5DG440600 Rh6AG048200 Rh6AG074100 Rh6AG148600 Rh6AG196800 Rh6AG406100 Rh7AG362100 Rh7BG138700 Rh7CG380700 Rh7DG335500
rosa_wichuraiana	Rw3G013510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	85
AciI	CCGC	4 cut(s)	55, 85, 109, 154
AcoI	YGGCCR	2 cut(s)	239, 278
AfaI	GTAC	1 cut(s)	567
AfiI	CCNNNNNNNGG	1 cut(s)	266
AflII	CTTAAG	1 cut(s)	494
AgsI	TTSAA	5 cut(s)	9, 322, 456, 551, 623
AluBI	AGCT	8 cut(s)	23, 170, 237, 294, 398, 509, 589, 674
AluI	AGCT	8 cut(s)	23, 170, 237, 294, 398, 509, 589, 674
Alw26I	GTCTC	1 cut(s)	124
Ama87I	CYCGRG	1 cut(s)	24
AoxI	GGCC	3 cut(s)	239, 256, 278
ApeKI	GCWGC	1 cut(s)	589
AseI	ATTAAT	1 cut(s)	306
Asp700I	GAANNNNTTC	2 cut(s)	33, 489
AspLEI	GCGC	1 cut(s)	524
AspS9I	GGNCC	1 cut(s)	257
AsuHPI	GGTGA	1 cut(s)	138
AvaI	CYCGRG	1 cut(s)	24
BalI	TGGCCA	2 cut(s)	241, 280
BbsI	GAAGAC	1 cut(s)	132
BbvI	GCAGC	1 cut(s)	576
BcoDI	GTCTC	1 cut(s)	124
BfaI	CTAG	1 cut(s)	14
BfmI	CTRYAG	2 cut(s)	41, 612
BfrI	CTTAAG	1 cut(s)	494
BglI	GCCNNNNNGGC	1 cut(s)	63
BisI	GCNGC	3 cut(s)	86, 155, 590
BlsI	GCNGC	3 cut(s)	87, 156, 591
BmeT110I	CYCGRG	1 cut(s)	24
BmgT120I	GGNCC	1 cut(s)	257
BmiI	GGNNCC	2 cut(s)	67, 450
BpiI	GAAGAC	1 cut(s)	132
BpmI	CTGGAG	2 cut(s)	197, 378
BpuEI	CTTGAG	2 cut(s)	401, 457
BsaJI	CCNNGG	1 cut(s)	185
BsaXI	ACNNNNNCTCC	2 cut(s)	90, 120
Bsc4I	CCNNNNNNNGG	1 cut(s)	266
Bse118I	RCCGGY	1 cut(s)	592
Bse1I	ACTGG	1 cut(s)	605
Bse3DI	GCAATG	1 cut(s)	423
BseDI	CCNNGG	1 cut(s)	185
BseLI	CCNNNNNNNGG	1 cut(s)	266
BseMI	GCAATG	1 cut(s)	423
BseMII	CTCAG	3 cut(s)	180, 390, 402
BseNI	ACTGG	1 cut(s)	605
BseRI	GAGGAG	1 cut(s)	198
BseXI	GCAGC	1 cut(s)	576
Bsh1236I	CGCG	1 cut(s)	85
BshFI	GGCC	3 cut(s)	241, 258, 280
BsiHKCI	CYCGRG	1 cut(s)	24
BsiSI	CCGG	2 cut(s)	353, 593
BslI	CCNNNNNNNGG	1 cut(s)	266
BsmAI	GTCTC	1 cut(s)	124
BsnI	GGCC	3 cut(s)	241, 258, 280
BsoBI	CYCGRG	1 cut(s)	24
Bsp143I	GATC	1 cut(s)	660
BspACI	CCGC	4 cut(s)	55, 85, 109, 154
BspANI	GGCC	3 cut(s)	241, 258, 280
BspCNI	CTCAG	3 cut(s)	179, 391, 403
BspFNI	CGCG	1 cut(s)	85
BspLI	GGNNCC	2 cut(s)	67, 450
BspQI	GCTCTTC	2 cut(s)	164, 317
BspTI	CTTAAG	1 cut(s)	494
BsrDI	GCAATG	1 cut(s)	423
BsrFI	RCCGGY	1 cut(s)	592
BsrI	ACTGG	1 cut(s)	605
BssAI	RCCGGY	1 cut(s)	592
BssECI	CCNNGG	1 cut(s)	185
BssMI	GATC	1 cut(s)	660
Bst4CI	ACNGT	1 cut(s)	374
Bst6I	CTCTTC	2 cut(s)	164, 317
BstAFI	CTTAAG	1 cut(s)	494
BstC8I	GCNNGC	2 cut(s)	239, 520
BstDEI	CTNAG	3 cut(s)	166, 399, 411
BstFNI	CGCG	1 cut(s)	85
BstHHI	GCGC	1 cut(s)	524
BstKTI	GATC	1 cut(s)	663
BstMAI	GTCTC	1 cut(s)	124
BstMBI	GATC	1 cut(s)	660
BstMWI	GCNNNNNNNGC	3 cut(s)	63, 506, 515
BstSFI	CTRYAG	2 cut(s)	41, 612
BstUI	CGCG	1 cut(s)	85
BstV1I	GCAGC	1 cut(s)	576
BstV2I	GAAGAC	1 cut(s)	132
BsuRI	GGCC	3 cut(s)	241, 258, 280
BtsIMutI	CAGTG	2 cut(s)	379, 612
Cac8I	GCNNGC	2 cut(s)	239, 520
CfoI	GCGC	1 cut(s)	524
Cfr10I	RCCGGY	1 cut(s)	592
Cfr13I	GGNCC	1 cut(s)	257
Csp6I	GTAC	1 cut(s)	566
CviQI	GTAC	1 cut(s)	566
DdeI	CTNAG	3 cut(s)	166, 399, 411
DpnI	GATC	1 cut(s)	662
DpnII	GATC	1 cut(s)	660
EaeI	YGGCCR	2 cut(s)	239, 278
Eam1104I	CTCTTC	2 cut(s)	164, 317
EarI	CTCTTC	2 cut(s)	164, 317
EciI	GGCGGA	2 cut(s)	44, 98
Eco88I	CYCGRG	1 cut(s)	24
FaiI	YATR	2 cut(s)	446, 614
FalI	AAGNNNNNCTT	2 cut(s)	278, 310
Fnu4HI	GCNGC	3 cut(s)	86, 155, 590
Fsp4HI	GCNGC	3 cut(s)	86, 155, 590
FspBI	CTAG	1 cut(s)	14
GlaI	GCGC	1 cut(s)	523
GluI	GCNGC	3 cut(s)	86, 155, 590
GsuI	CTGGAG	2 cut(s)	197, 378
HaeIII	GGCC	3 cut(s)	241, 258, 280
HapII	CCGG	2 cut(s)	353, 593
HhaI	GCGC	1 cut(s)	524
Hin6I	GCGC	1 cut(s)	522
HinP1I	GCGC	1 cut(s)	522
HinfI	GANTC	3 cut(s)	34, 51, 349
HpaII	CCGG	2 cut(s)	353, 593
HphI	GGTGA	1 cut(s)	138
Hpy188I	TCNGA	1 cut(s)	300
Hpy188III	TCNNGA	6 cut(s)	26, 179, 214, 380, 474, 557
Hpy99I	CGWCG	1 cut(s)	231
HpyAV	CCTTC	3 cut(s)	15, 137, 462
HpyCH4III	ACNGT	1 cut(s)	374
HpyCH4IV	ACGT	1 cut(s)	226
HpyCH4V	TGCA	1 cut(s)	103
HpyF10VI	GCNNNNNNNGC	3 cut(s)	63, 506, 515
HpyF3I	CTNAG	3 cut(s)	166, 399, 411
HpySE526I	ACGT	1 cut(s)	226
HspAI	GCGC	1 cut(s)	522
Kzo9I	GATC	1 cut(s)	660
LguI	GCTCTTC	2 cut(s)	164, 317
LmnI	GCTCC	3 cut(s)	71, 454, 679
Lsp1109I	GCAGC	1 cut(s)	576
MaeI	CTAG	1 cut(s)	14
MaeII	ACGT	1 cut(s)	226
MaeIII	GTNAC	1 cut(s)	649
MalI	GATC	1 cut(s)	662
MboI	GATC	1 cut(s)	660
MboII	GAAGA	7 cut(s)	132, 151, 334, 397, 584, 611, 635
MlsI	TGGCCA	2 cut(s)	241, 280
MluCI	AATT	1 cut(s)	29
MluNI	TGGCCA	2 cut(s)	241, 280
MlyI	GAGTC	2 cut(s)	45, 343
Mox20I	TGGCCA	2 cut(s)	241, 280
MroXI	GAANNNNTTC	2 cut(s)	33, 489
MscI	TGGCCA	2 cut(s)	241, 280
MseI	TTAA	2 cut(s)	306, 495
Msp20I	TGGCCA	2 cut(s)	241, 280
MspA1I	CMGCKG	1 cut(s)	398
MspCI	CTTAAG	1 cut(s)	494
MspI	CCGG	2 cut(s)	353, 593
MvnI	CGCG	1 cut(s)	85
MwoI	GCNNNNNNNGC	3 cut(s)	63, 506, 515
NdeII	GATC	1 cut(s)	660
NlaIV	GGNNCC	2 cut(s)	67, 450
NmuCI	GTSAC	1 cut(s)	649
PciSI	GCTCTTC	2 cut(s)	164, 317
PdmI	GAANNNNTTC	2 cut(s)	33, 489
PfeI	GAWTC	1 cut(s)	34
PkrI	GCNGC	3 cut(s)	87, 156, 591
PleI	GAGTC	2 cut(s)	45, 343
PpsI	GAGTC	2 cut(s)	45, 343
PshBI	ATTAAT	1 cut(s)	306
PspN4I	GGNNCC	2 cut(s)	67, 450
PspPI	GGNCC	1 cut(s)	257
PvuII	CAGCTG	1 cut(s)	398
RsaI	GTAC	1 cut(s)	567
RsaNI	GTAC	1 cut(s)	566
SapI	GCTCTTC	2 cut(s)	164, 317
SaqAI	TTAA	2 cut(s)	306, 495
SatI	GCNGC	3 cut(s)	86, 155, 590
Sau3AI	GATC	1 cut(s)	660
Sau96I	GGNCC	1 cut(s)	257
SchI	GAGTC	2 cut(s)	45, 343
SfcI	CTRYAG	2 cut(s)	41, 612
SmlI	CTYRAG	3 cut(s)	380, 472, 494
SmoI	CTYRAG	3 cut(s)	380, 472, 494
Sse9I	AATT	1 cut(s)	29
SsiI	CCGC	4 cut(s)	55, 85, 109, 154
SspI	AATATT	3 cut(s)	304, 490, 580
SspMI	CTAG	1 cut(s)	14
TaaI	ACNGT	1 cut(s)	374
TaiI	ACGT	1 cut(s)	229
TaqI	TCGA	1 cut(s)	229
TaqII	GACCGA	2 cut(s)	126, 236
TasI	AATT	1 cut(s)	29
TatI	WGTACW	1 cut(s)	565
TauI	GCSGC	2 cut(s)	88, 157
TfiI	GAWTC	1 cut(s)	34
Tru1I	TTAA	2 cut(s)	306, 495
Tru9I	TTAA	2 cut(s)	306, 495
TscAI	CASTG	2 cut(s)	379, 612
TseFI	GTSAC	1 cut(s)	649
TseI	GCWGC	1 cut(s)	589
Tsp45I	GTSAC	1 cut(s)	649
TspDTI	ATGAA	1 cut(s)	26
TspRI	CASTG	2 cut(s)	379, 612
Vha464I	CTTAAG	1 cut(s)	494
VspI	ATTAAT	1 cut(s)	306
XmnI	GAANNNNTTC	2 cut(s)	33, 489
XspI	CTAG	1 cut(s)	14

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.