Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3C

Orthogroup ID

OG0001411

Physical Location & Seq

Genomic Coordinates Reverse (-)

26738642 .. 26743336

Gene Structure 4695 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3CG270900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 612 bp

ATGGAGTCTGGTTCGCCTCCTTCGTTGCACATCAATCAGTTCCTCTTCCTCACTTCCTCAGCTGTCTGTGACTCCGCCTCTCTGGCTCCCTCCTTCTGTTCTCGCGGCTCTCCGCAAGACTGCAACTCCGTCTCTCTCCCTCACAATCAGTCTTCCTCACCTCTGCGGCTCTTCCTCTCAGCTCTCACTCTTGCCCCTCGACATCAGCAAATCCAATCTCCTCTCCAGAACCCTCAACGTCGACGTAGCTGGCCAATCTGTCATCAAGGCCCAGATTTAGGACACTTTTGGCCAAGAAAGGTCAGCTTTCTGAATATTAATGGTTTCGGTTCGAAGAGCAGTAAGAAACCCAAATCAAAGACTCCGGCAAAGAAGCCCAAAGACAGTGTTCTTGAGCAGAAATCTCCAGCTGAGTTCTTCGCTGAGAACAAGAACATTGCTGGATTTGGTAATCCAGGGAAATGTCTTTATACTACTGTGAGGGAACTTGTGGAGAACTCATTTGATTCGACGGAGTCCATATCGGAGCTTCCTCTGATAGAAATCACAATGTTGTTCACGTCTGTGATGGCTTGTATGAGTGAACATGCAGTAAAGGAGACATGCACCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000902 GO:0003674 GO:0003735 GO:0003824 GO:0003916 GO:0003918 GO:0005198 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006412 GO:0006518 GO:0006725 GO:0006807 GO:0007049 GO:0007275 GO:0007389 GO:0008094 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009330 GO:0009653 GO:0009719 GO:0009725 GO:0009741 GO:0009888 GO:0009987 GO:0010026 GO:0010033 GO:0010467 GO:0014070 GO:0015935 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016853 GO:0016887 GO:0017111 GO:0019538 GO:0022402 GO:0022613 GO:0030154 GO:0032501 GO:0032502 GO:0032989 GO:0032991 GO:0033993 GO:0034641 GO:0034645 GO:0042023 GO:0042221 GO:0042254 GO:0042623 GO:0042802 GO:0042803 GO:0043043 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043603 GO:0043604 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044446 GO:0044464 GO:0044786 GO:0046483 GO:0046983 GO:0048856 GO:0048869 GO:0050896 GO:0061505 GO:0071704 GO:0071840 GO:0090304 GO:0090558 GO:0140097 GO:1901360 GO:1901564 GO:1901566 GO:1901576 GO:1901700 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HATPase_c HATPase_c_3 Topo-VIb_trans

Protein Analysis

203

Amino Acids

22.33

Weight (kDa)

8.88

Isoelectric Point (pI)

79.12

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001411)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0372821 RchiOBHm_Chr2g0120391 RchiOBHm_Chr3g0472751 RchiOBHm_Chr5g0036011 RchiOBHm_Chr6g0269661 RchiOBHm_Chr7g0231021
rosa_laevigata	RLG00000000534 RLG00000003816
rosa_multiflora	Rmu_sc0000084.1_g000050 Rmu_sc0001493.1_g000009 Rmu_sc0001851.1_g000026 Rmu_sc0003198.1_g000001 Rmu_sc0003198.1_g000002 Rmu_sc0004226.1_g000003 Rmu_sc0005738.1_g000004 Rmu_sc0006380.1_g000004 Rmu_sc0012041.1_g000003 Rmu_sc0017397.1_g000001
rosa_roxburghii	Rroxscaffold_4G00313360
rosa_rugosa	Rorug03G0325800 Rorug04G0073800 Rorug06G0052600
rosa_samantha	Rh1CG021400 Rh2CG235800 Rh2DG107900 Rh3AG180200 Rh3BG065800 Rh3BG206400 Rh3CG064500 Rh3CG203500 Rh3CG221800 Rh3CG270900 Rh3DG065700 Rh3DG132500 Rh3DG266800 Rh4AG242700 Rh4BG140300 Rh4BG140400 Rh4CG033900 Rh5AG093800 Rh5BG377400 Rh5BG426700 Rh5DG440600 Rh6AG048200 Rh6AG074100 Rh6AG148600 Rh6AG196800 Rh6AG406100 Rh7AG362100 Rh7BG138700 Rh7CG380700 Rh7DG335500
rosa_wichuraiana	Rw3G013510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	241
AccII	CGCG	1 cut(s)	105
AciI	CCGC	4 cut(s)	75, 105, 113, 166
AcoI	YGGCCR	2 cut(s)	251, 290
AfiI	CCNNNNNNNGG	1 cut(s)	278
AjiI	CACGTC	1 cut(s)	561
AjnI	CCWGG	1 cut(s)	454
AleI	CACNNNNGTG	1 cut(s)	563
AluBI	AGCT	6 cut(s)	62, 182, 249, 306, 410, 529
AluI	AGCT	6 cut(s)	62, 182, 249, 306, 410, 529
Alw26I	GTCTC	2 cut(s)	136, 593
AoxI	GGCC	3 cut(s)	251, 268, 290
AseI	ATTAAT	1 cut(s)	318
AspS9I	GGNCC	1 cut(s)	269
AsuHPI	GGTGA	1 cut(s)	150
AsuII	TTCGAA	1 cut(s)	332
BalI	TGGCCA	2 cut(s)	253, 292
BbsI	GAAGAC	1 cut(s)	144
BbvCI	CCTCAGC	1 cut(s)	58
BccI	CCATC	1 cut(s)	562
BciT130I	CCWGG	1 cut(s)	456
BcoDI	GTCTC	2 cut(s)	136, 593
BfaI	CTAG	1 cut(s)	610
BglI	GCCNNNNNGGC	1 cut(s)	83
BisI	GCNGC	2 cut(s)	106, 167
BlsI	GCNGC	2 cut(s)	107, 168
Bme1390I	CCNGG	1 cut(s)	456
BmgBI	CACGTC	1 cut(s)	561
BmgT120I	GGNCC	1 cut(s)	269
BmiI	GGNNCC	1 cut(s)	87
BmrFI	CCNGG	1 cut(s)	456
BpiI	GAAGAC	1 cut(s)	144
BpmI	CTGGAG	2 cut(s)	209, 390
Bpu10I	CCTNAGC	1 cut(s)	58
Bpu14I	TTCGAA	1 cut(s)	332
BpuEI	CTTGAG	1 cut(s)	413
BsaBI	GATNNNNATC	1 cut(s)	542
BsaJI	CCNNGG	1 cut(s)	455
BsaXI	ACNNNNNCTCC	2 cut(s)	110, 140
Bsc4I	CCNNNNNNNGG	1 cut(s)	278
Bse3DI	GCAATG	1 cut(s)	435
Bse8I	GATNNNNATC	1 cut(s)	542
BseBI	CCWGG	1 cut(s)	456
BseDI	CCNNGG	1 cut(s)	455
BseJI	GATNNNNATC	1 cut(s)	542
BseLI	CCNNNNNNNGG	1 cut(s)	278
BseMI	GCAATG	1 cut(s)	435
BseMII	CTCAG	4 cut(s)	72, 192, 402, 414
BseRI	GAGGAG	1 cut(s)	210
Bsh1236I	CGCG	1 cut(s)	105
BshFI	GGCC	3 cut(s)	253, 270, 292
BsiSI	CCGG	1 cut(s)	365
BslI	CCNNNNNNNGG	1 cut(s)	278
BsmAI	GTCTC	2 cut(s)	136, 593
BsmBI	CGTCTC	1 cut(s)	136
BsnI	GGCC	3 cut(s)	253, 270, 292
Bsp119I	TTCGAA	1 cut(s)	332
BspACI	CCGC	4 cut(s)	75, 105, 113, 166
BspANI	GGCC	3 cut(s)	253, 270, 292
BspCNI	CTCAG	4 cut(s)	71, 191, 403, 415
BspFNI	CGCG	1 cut(s)	105
BspLI	GGNNCC	1 cut(s)	87
BspQI	GCTCTTC	2 cut(s)	176, 329
BspT104I	TTCGAA	1 cut(s)	332
BsrDI	GCAATG	1 cut(s)	435
BssECI	CCNNGG	1 cut(s)	455
Bst2UI	CCWGG	1 cut(s)	456
Bst4CI	ACNGT	2 cut(s)	386, 478
Bst6I	CTCTTC	3 cut(s)	50, 176, 329
BstBI	TTCGAA	1 cut(s)	332
BstC8I	GCNNGC	1 cut(s)	251
BstDEI	CTNAG	4 cut(s)	58, 178, 411, 423
BstFNI	CGCG	1 cut(s)	105
BstMAI	GTCTC	2 cut(s)	136, 593
BstMWI	GCNNNNNNNGC	1 cut(s)	83
BstNI	CCWGG	1 cut(s)	456
BstNSI	RCATGY	2 cut(s)	590, 606
BstSCI	CCNGG	1 cut(s)	454
BstUI	CGCG	1 cut(s)	105
BstV2I	GAAGAC	1 cut(s)	144
BsuRI	GGCC	3 cut(s)	253, 270, 292
BtrI	CACGTC	1 cut(s)	561
BtsIMutI	CAGTG	1 cut(s)	391
Cac8I	GCNNGC	1 cut(s)	251
Cfr13I	GGNCC	1 cut(s)	269
CviAII	CATG	2 cut(s)	587, 603
DdeI	CTNAG	4 cut(s)	58, 178, 411, 423
EaeI	YGGCCR	2 cut(s)	251, 290
Eam1104I	CTCTTC	3 cut(s)	50, 176, 329
EarI	CTCTTC	3 cut(s)	50, 176, 329
EciI	GGCGGA	1 cut(s)	64
EcoRII	CCWGG	1 cut(s)	454
Esp3I	CGTCTC	1 cut(s)	136
FaeI	CATG	2 cut(s)	590, 606
FaiI	YATR	5 cut(s)	471, 521, 578, 588, 604
FalI	AAGNNNNNCTT	2 cut(s)	290, 322
FatI	CATG	2 cut(s)	586, 602
FblI	GTMKAC	1 cut(s)	241
Fnu4HI	GCNGC	2 cut(s)	106, 167
Fsp4HI	GCNGC	2 cut(s)	106, 167
FspBI	CTAG	1 cut(s)	610
GluI	GCNGC	2 cut(s)	106, 167
GsuI	CTGGAG	2 cut(s)	209, 390
HaeIII	GGCC	3 cut(s)	253, 270, 292
HapII	CCGG	1 cut(s)	365
Hin1II	CATG	2 cut(s)	590, 606
HincII	GTYRAC	1 cut(s)	242
HindII	GTYRAC	1 cut(s)	242
HinfI	GANTC	5 cut(s)	5, 71, 361, 506, 515
HpaII	CCGG	1 cut(s)	365
HphI	GGTGA	1 cut(s)	150
Hpy166II	GTNNAC	3 cut(s)	242, 558, 584
Hpy188I	TCNGA	3 cut(s)	312, 526, 537
Hpy188III	TCNNGA	2 cut(s)	226, 392
Hpy8I	GTNNAC	3 cut(s)	242, 558, 584
Hpy99I	CGWCG	3 cut(s)	243, 246, 514
HpyAV	CCTTC	2 cut(s)	30, 103
HpyCH4III	ACNGT	2 cut(s)	386, 478
HpyCH4IV	ACGT	3 cut(s)	238, 244, 560
HpyCH4V	TGCA	4 cut(s)	28, 123, 590, 606
HpyF10VI	GCNNNNNNNGC	1 cut(s)	83
HpyF3I	CTNAG	4 cut(s)	58, 178, 411, 423
HpySE526I	ACGT	3 cut(s)	238, 244, 560
Hsp92II	CATG	2 cut(s)	590, 606
LguI	GCTCTTC	2 cut(s)	176, 329
LmnI	GCTCC	2 cut(s)	91, 526
LpnPI	CCDG	9 cut(s)	68, 235, 239, 285, 378, 420, 426, 441, 468
MaeI	CTAG	1 cut(s)	610
MaeII	ACGT	3 cut(s)	238, 244, 560
MaeIII	GTNAC	1 cut(s)	68
MboII	GAAGA	5 cut(s)	37, 144, 163, 346, 409
MlsI	TGGCCA	2 cut(s)	253, 292
MluNI	TGGCCA	2 cut(s)	253, 292
MlyI	GAGTC	4 cut(s)	14, 65, 355, 524
Mox20I	TGGCCA	2 cut(s)	253, 292
MscI	TGGCCA	2 cut(s)	253, 292
MseI	TTAA	1 cut(s)	318
MslI	CAYNNNNRTG	1 cut(s)	563
Msp20I	TGGCCA	2 cut(s)	253, 292
MspA1I	CMGCKG	2 cut(s)	62, 410
MspI	CCGG	1 cut(s)	365
MspR9I	CCNGG	1 cut(s)	456
MvaI	CCWGG	1 cut(s)	456
MvnI	CGCG	1 cut(s)	105
MwoI	GCNNNNNNNGC	1 cut(s)	83
NlaIII	CATG	2 cut(s)	590, 606
NlaIV	GGNNCC	1 cut(s)	87
NmuCI	GTSAC	1 cut(s)	68
NspI	RCATGY	2 cut(s)	590, 606
NspV	TTCGAA	1 cut(s)	332
OliI	CACNNNNGTG	1 cut(s)	563
PciSI	GCTCTTC	2 cut(s)	176, 329
PcsI	WCGNNNNNNNCGW	1 cut(s)	20
PfeI	GAWTC	1 cut(s)	506
PflFI	GACNNNGTC	1 cut(s)	514
PkrI	GCNGC	2 cut(s)	107, 168
PleI	GAGTC	4 cut(s)	13, 65, 355, 523
PpsI	GAGTC	4 cut(s)	13, 65, 355, 523
PshBI	ATTAAT	1 cut(s)	318
Psp6I	CCWGG	1 cut(s)	454
PspGI	CCWGG	1 cut(s)	454
PspN4I	GGNNCC	1 cut(s)	87
PspPI	GGNCC	1 cut(s)	269
PsyI	GACNNNGTC	1 cut(s)	514
PvuII	CAGCTG	2 cut(s)	62, 410
RseI	CAYNNNNRTG	1 cut(s)	563
SalI	GTCGAC	1 cut(s)	240
SapI	GCTCTTC	2 cut(s)	176, 329
SaqAI	TTAA	1 cut(s)	318
SatI	GCNGC	2 cut(s)	106, 167
Sau96I	GGNCC	1 cut(s)	269
SchI	GAGTC	4 cut(s)	14, 65, 355, 524
ScrFI	CCNGG	1 cut(s)	456
SfuI	TTCGAA	1 cut(s)	332
SgrDI	CGTCGACG	1 cut(s)	240
SmiMI	CAYNNNNRTG	1 cut(s)	563
SmlI	CTYRAG	1 cut(s)	392
SmoI	CTYRAG	1 cut(s)	392
SsiI	CCGC	4 cut(s)	75, 105, 113, 166
SspI	AATATT	1 cut(s)	316
SspMI	CTAG	1 cut(s)	610
StyD4I	CCNGG	1 cut(s)	454
TaaI	ACNGT	2 cut(s)	386, 478
TaiI	ACGT	3 cut(s)	241, 247, 563
TaqI	TCGA	4 cut(s)	199, 241, 332, 509
TauI	GCSGC	2 cut(s)	108, 169
TfiI	GAWTC	1 cut(s)	506
Tru1I	TTAA	1 cut(s)	318
Tru9I	TTAA	1 cut(s)	318
TscAI	CASTG	1 cut(s)	391
TseFI	GTSAC	1 cut(s)	68
Tsp45I	GTSAC	1 cut(s)	68
TspGWI	ACGGA	2 cut(s)	118, 527
TspRI	CASTG	1 cut(s)	391
Tth111I	GACNNNGTC	1 cut(s)	514
VspI	ATTAAT	1 cut(s)	318
XceI	RCATGY	2 cut(s)	590, 606
XmiI	GTMKAC	1 cut(s)	241
XspI	CTAG	1 cut(s)	610

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.