Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3A

Orthogroup ID

OG0001411

Physical Location & Seq

Genomic Coordinates Forward (+)

16949151 .. 16961578

Gene Structure 12428 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3AG180200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 573 bp

ATGATTGAGTGGAACAGATGGGATTTGTTATTTTCACTTCGTAAGAAGATCAAAGAAGAGCTGGCCAATCGGTCATCAAGGCCCAGATTTAGGACACTTTTGGCCAAGAAAGGGGCAGATTTGGTGGTTTGTGGTGTTGAATTGCAGGTCAGCTTTCTGAATATTAATGGTTTCGGTTTGAAGAGCAGTAAGAAACCCAAATCAAAGACTCCGGCAAAGAAGCCCAAAGACAGTGTTCTTGAGCAGAAATCTCCAGCTGAGTTCTTCGCTGAGAACAAGAACATTGCTGGATTTGGTAATCCAGGGAAATGTCTTTATACTAATGTGAGGGAACTTGTGGAGAACTCATTTGATTCGACGGAGTCCATATCGGAGCTTCCTCTGATAGAAATCACAATACACAGCAAGCCGCACCAAATGGAGAAGCATATCAAGACACTCATTGTCCTATCTCACTACTTGGAGATGCAGTCTTTTTCCTCTCCATTGTCTACCATACTAAGCAAGCTCAAGAGTCAAGACTCCACAACTCCCAAAAGCCCTTCACAGTGGGCCAGATGGAAGAATGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000902 GO:0003674 GO:0003735 GO:0003824 GO:0003916 GO:0003918 GO:0005198 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006412 GO:0006518 GO:0006725 GO:0006807 GO:0007049 GO:0007275 GO:0007389 GO:0008094 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009330 GO:0009653 GO:0009719 GO:0009725 GO:0009741 GO:0009888 GO:0009987 GO:0010026 GO:0010033 GO:0010467 GO:0014070 GO:0015935 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016853 GO:0016887 GO:0017111 GO:0019538 GO:0022402 GO:0022613 GO:0030154 GO:0032501 GO:0032502 GO:0032989 GO:0032991 GO:0033993 GO:0034641 GO:0034645 GO:0042023 GO:0042221 GO:0042254 GO:0042623 GO:0042802 GO:0042803 GO:0043043 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043603 GO:0043604 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044446 GO:0044464 GO:0044786 GO:0046483 GO:0046983 GO:0048856 GO:0048869 GO:0050896 GO:0061505 GO:0071704 GO:0071840 GO:0090304 GO:0090558 GO:0140097 GO:1901360 GO:1901564 GO:1901566 GO:1901576 GO:1901700 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HATPase_c HATPase_c_3 Topo-VIb_trans

Protein Analysis

190

Amino Acids

21.62

Weight (kDa)

9.7

Isoelectric Point (pI)

59.85

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001411)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0372821 RchiOBHm_Chr2g0120391 RchiOBHm_Chr3g0472751 RchiOBHm_Chr5g0036011 RchiOBHm_Chr6g0269661 RchiOBHm_Chr7g0231021
rosa_laevigata	RLG00000000534 RLG00000003816
rosa_multiflora	Rmu_sc0000084.1_g000050 Rmu_sc0001493.1_g000009 Rmu_sc0001851.1_g000026 Rmu_sc0003198.1_g000001 Rmu_sc0003198.1_g000002 Rmu_sc0004226.1_g000003 Rmu_sc0005738.1_g000004 Rmu_sc0006380.1_g000004 Rmu_sc0012041.1_g000003 Rmu_sc0017397.1_g000001
rosa_roxburghii	Rroxscaffold_4G00313360
rosa_rugosa	Rorug03G0325800 Rorug04G0073800 Rorug06G0052600
rosa_samantha	Rh1CG021400 Rh2CG235800 Rh2DG107900 Rh3AG180200 Rh3BG065800 Rh3BG206400 Rh3CG064500 Rh3CG203500 Rh3CG221800 Rh3CG270900 Rh3DG065700 Rh3DG132500 Rh3DG266800 Rh4AG242700 Rh4BG140300 Rh4BG140400 Rh4CG033900 Rh5AG093800 Rh5BG377400 Rh5BG426700 Rh5DG440600 Rh6AG048200 Rh6AG074100 Rh6AG148600 Rh6AG196800 Rh6AG406100 Rh7AG362100 Rh7BG138700 Rh7CG380700 Rh7DG335500
rosa_wichuraiana	Rw3G013510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	136
AccI	GTMKAC	1 cut(s)	491
AciI	CCGC	1 cut(s)	410
AcoI	YGGCCR	2 cut(s)	63, 102
AfiI	CCNNNNNNNGG	2 cut(s)	90, 111
AgsI	TTSAA	2 cut(s)	140, 181
AjnI	CCWGG	1 cut(s)	301
AluBI	AGCT	5 cut(s)	61, 153, 257, 376, 508
AluI	AGCT	5 cut(s)	61, 153, 257, 376, 508
AoxI	GGCC	4 cut(s)	63, 80, 102, 552
AseI	ATTAAT	1 cut(s)	165
AspS9I	GGNCC	2 cut(s)	81, 552
BalI	TGGCCA	2 cut(s)	65, 104
BccI	CCATC	2 cut(s)	12, 552
BciT130I	CCWGG	1 cut(s)	303
BfuAI	ACCTGC	1 cut(s)	136
BisI	GCNGC	1 cut(s)	410
BlsI	GCNGC	1 cut(s)	411
Bme1390I	CCNGG	1 cut(s)	303
BmgT120I	GGNCC	2 cut(s)	81, 552
BmrFI	CCNGG	1 cut(s)	303
BmsI	GCATC	1 cut(s)	456
BpmI	CTGGAG	1 cut(s)	237
BpuEI	CTTGAG	2 cut(s)	260, 494
BsaBI	GATNNNNATC	1 cut(s)	389
BsaJI	CCNNGG	1 cut(s)	302
BsaXI	ACNNNNNCTCC	2 cut(s)	455, 485
Bsc4I	CCNNNNNNNGG	2 cut(s)	90, 111
Bse3DI	GCAATG	1 cut(s)	282
Bse8I	GATNNNNATC	1 cut(s)	389
BseBI	CCWGG	1 cut(s)	303
BseDI	CCNNGG	1 cut(s)	302
BseJI	GATNNNNATC	1 cut(s)	389
BseLI	CCNNNNNNNGG	2 cut(s)	90, 111
BseMI	GCAATG	1 cut(s)	282
BseMII	CTCAG	2 cut(s)	249, 261
BshFI	GGCC	4 cut(s)	65, 82, 104, 554
BsiSI	CCGG	1 cut(s)	212
BslI	CCNNNNNNNGG	2 cut(s)	90, 111
BsnI	GGCC	4 cut(s)	65, 82, 104, 554
Bsp143I	GATC	1 cut(s)	48
BspACI	CCGC	1 cut(s)	410
BspANI	GGCC	4 cut(s)	65, 82, 104, 554
BspCNI	CTCAG	2 cut(s)	250, 262
BspMI	ACCTGC	1 cut(s)	136
BspQI	GCTCTTC	2 cut(s)	51, 176
BsrDI	GCAATG	1 cut(s)	282
BssECI	CCNNGG	1 cut(s)	302
BssMI	GATC	1 cut(s)	48
Bst2UI	CCWGG	1 cut(s)	303
Bst4CI	ACNGT	2 cut(s)	233, 549
Bst6I	CTCTTC	2 cut(s)	51, 176
BstC8I	GCNNGC	3 cut(s)	63, 407, 506
BstDEI	CTNAG	3 cut(s)	258, 270, 500
BstKTI	GATC	1 cut(s)	51
BstMBI	GATC	1 cut(s)	48
BstNI	CCWGG	1 cut(s)	303
BstSCI	CCNGG	1 cut(s)	301
BsuRI	GGCC	4 cut(s)	65, 82, 104, 554
BtsIMutI	CAGTG	2 cut(s)	238, 554
BveI	ACCTGC	1 cut(s)	136
Cac8I	GCNNGC	3 cut(s)	63, 407, 506
Cfr13I	GGNCC	2 cut(s)	81, 552
DdeI	CTNAG	3 cut(s)	258, 270, 500
DpnI	GATC	1 cut(s)	50
DpnII	GATC	1 cut(s)	48
EaeI	YGGCCR	2 cut(s)	63, 102
Eam1104I	CTCTTC	2 cut(s)	51, 176
EarI	CTCTTC	2 cut(s)	51, 176
EcoRII	CCWGG	1 cut(s)	301
FaiI	YATR	4 cut(s)	318, 368, 429, 497
FblI	GTMKAC	1 cut(s)	491
Fnu4HI	GCNGC	1 cut(s)	410
Fsp4HI	GCNGC	1 cut(s)	410
GluI	GCNGC	1 cut(s)	410
GsuI	CTGGAG	1 cut(s)	237
HaeIII	GGCC	4 cut(s)	65, 82, 104, 554
HapII	CCGG	1 cut(s)	212
HinfI	GANTC	5 cut(s)	208, 353, 362, 514, 521
HpaII	CCGG	1 cut(s)	212
Hpy166II	GTNNAC	1 cut(s)	492
Hpy188I	TCNGA	3 cut(s)	159, 373, 384
Hpy188III	TCNNGA	4 cut(s)	239, 433, 511, 518
Hpy8I	GTNNAC	1 cut(s)	492
Hpy99I	CGWCG	1 cut(s)	361
HpyAV	CCTTC	1 cut(s)	552
HpyCH4III	ACNGT	2 cut(s)	233, 549
HpyCH4V	TGCA	2 cut(s)	145, 469
HpyF3I	CTNAG	3 cut(s)	258, 270, 500
Kzo9I	GATC	1 cut(s)	48
LguI	GCTCTTC	2 cut(s)	51, 176
LmnI	GCTCC	1 cut(s)	373
LpnPI	CCDG	9 cut(s)	47, 97, 131, 225, 267, 273, 288, 315, 568
LweI	GCATC	1 cut(s)	456
MalI	GATC	1 cut(s)	50
MboI	GATC	1 cut(s)	48
MboII	GAAGA	4 cut(s)	58, 68, 193, 256
MlsI	TGGCCA	2 cut(s)	65, 104
MluCI	AATT	1 cut(s)	140
MluNI	TGGCCA	2 cut(s)	65, 104
MlyI	GAGTC	4 cut(s)	202, 371, 515, 523
MnlI	CCTC	3 cut(s)	321, 390, 490
Mox20I	TGGCCA	2 cut(s)	65, 104
MscI	TGGCCA	2 cut(s)	65, 104
MseI	TTAA	1 cut(s)	165
Msp20I	TGGCCA	2 cut(s)	65, 104
MspA1I	CMGCKG	1 cut(s)	257
MspI	CCGG	1 cut(s)	212
MspR9I	CCNGG	1 cut(s)	303
MvaI	CCWGG	1 cut(s)	303
NdeII	GATC	1 cut(s)	48
PciSI	GCTCTTC	2 cut(s)	51, 176
PfeI	GAWTC	1 cut(s)	353
PflFI	GACNNNGTC	1 cut(s)	361
PkrI	GCNGC	1 cut(s)	411
PleI	GAGTC	4 cut(s)	202, 370, 515, 522
PpsI	GAGTC	4 cut(s)	202, 370, 515, 522
PshBI	ATTAAT	1 cut(s)	165
Psp6I	CCWGG	1 cut(s)	301
PspGI	CCWGG	1 cut(s)	301
PspPI	GGNCC	2 cut(s)	81, 552
PsyI	GACNNNGTC	1 cut(s)	361
PvuII	CAGCTG	1 cut(s)	257
SapI	GCTCTTC	2 cut(s)	51, 176
SaqAI	TTAA	1 cut(s)	165
SatI	GCNGC	1 cut(s)	410
Sau3AI	GATC	1 cut(s)	48
Sau96I	GGNCC	2 cut(s)	81, 552
SchI	GAGTC	4 cut(s)	202, 371, 515, 523
ScrFI	CCNGG	1 cut(s)	303
SetI	ASST	6 cut(s)	63, 150, 155, 259, 378, 510
SfaNI	GCATC	1 cut(s)	456
SmlI	CTYRAG	2 cut(s)	239, 509
SmoI	CTYRAG	2 cut(s)	239, 509
Sse9I	AATT	1 cut(s)	140
SsiI	CCGC	1 cut(s)	410
SspI	AATATT	1 cut(s)	163
StyD4I	CCNGG	1 cut(s)	301
TaaI	ACNGT	2 cut(s)	233, 549
TaqI	TCGA	1 cut(s)	356
TaqII	GACCGA	1 cut(s)	60
TasI	AATT	1 cut(s)	140
TauI	GCSGC	1 cut(s)	412
TfiI	GAWTC	1 cut(s)	353
Tru1I	TTAA	1 cut(s)	165
Tru9I	TTAA	1 cut(s)	165
TscAI	CASTG	2 cut(s)	238, 554
TspGWI	ACGGA	1 cut(s)	374
TspRI	CASTG	2 cut(s)	238, 554
Tth111I	GACNNNGTC	1 cut(s)	361
VspI	ATTAAT	1 cut(s)	165
XmiI	GTMKAC	1 cut(s)	491

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.