Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0001411

Physical Location & Seq

Genomic Coordinates Reverse (-)

53062230 .. 53063064

Gene Structure 835 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000003816

Sequence Viewer

CDS Protein Promoter (2k)

Length: 594 bp

ATGCCTCTGCGTGATTGTTCTTGGATTTGGAGTAGTTATGGTGGAGGCAAAGGCACAATAAATAGGCATTCTTTGATGTTAAAGAGATTTCATTTCATAGAACTTCTGATTGCAATAAATAACTTCAATAGCAAGTACCTACGAAGAAAGGGAGGCTTTGGACATGTTTACAAAGGAAATATCTGCGATGGCACTATCGTAGCAGTCAAGAGACTTAAAGATGGCAGTGCTCTTAGTGGAGAGATTCAATTCCAGACTGAAGTTGACATGATCAGCCTAGCAGTTCATCGCAACCTTCTTCGGCTTTATGGGTTTTGCATCACTCCAACAGAAAGACTTCTAGTTTACCCATACATGTCCAATGGCAGTGTGGCTTCTTGTGTCAAAGGAAAACCAGTGTTGGATTGGGGAACTAGGAAACGAATTGCCTTGGGAGCTGCAAGAGGATTGTTATACCTTCATGAGCAATGTGACCCGAAAATTATCCACAAGGATGTGAACAGAGCAAATGTACTTCTTAATGACTACTGTGAAGCCGTGGTCGGAGATTTTGATTTGGCAAAACTTTTGGATCACCAAGTGTTCTGTGGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002252 GO:0002376 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008104 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009615 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0031974 GO:0031981 GO:0033036 GO:0033365 GO:0034504 GO:0034613 GO:0036211 GO:0038023 GO:0040008 GO:0040014 GO:0040015 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045926 GO:0046777 GO:0048519 GO:0048638 GO:0048640 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051093 GO:0051179 GO:0051239 GO:0051241 GO:0051607 GO:0051641 GO:0051704 GO:0051707 GO:0051716 GO:0060089 GO:0065007 GO:0070013 GO:0070727 GO:0071704 GO:0071944 GO:0098542 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_4 LRR_8 Pkinase Pkinase_Tyr

Protein Analysis

198

Amino Acids

22.15

Weight (kDa)

9.28

Isoelectric Point (pI)

32.25

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PK_Tyr_Ser-Thr	PF07714	50 - 190	8.6e-22	Protein tyrosine and serine/threonine kinase
Pkinase	PF00069	50 - 193	2.1e-21	Protein kinase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0001411)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0372821 RchiOBHm_Chr2g0120391 RchiOBHm_Chr3g0472751 RchiOBHm_Chr5g0036011 RchiOBHm_Chr6g0269661 RchiOBHm_Chr7g0231021
rosa_laevigata	RLG00000000534 RLG00000003816
rosa_multiflora	Rmu_sc0000084.1_g000050 Rmu_sc0001493.1_g000009 Rmu_sc0001851.1_g000026 Rmu_sc0003198.1_g000001 Rmu_sc0003198.1_g000002 Rmu_sc0004226.1_g000003 Rmu_sc0005738.1_g000004 Rmu_sc0006380.1_g000004 Rmu_sc0012041.1_g000003 Rmu_sc0017397.1_g000001
rosa_roxburghii	Rroxscaffold_4G00313360
rosa_rugosa	Rorug03G0325800 Rorug04G0073800 Rorug06G0052600
rosa_samantha	Rh1CG021400 Rh2CG235800 Rh2DG107900 Rh3AG180200 Rh3BG065800 Rh3BG206400 Rh3CG064500 Rh3CG203500 Rh3CG221800 Rh3CG270900 Rh3DG065700 Rh3DG132500 Rh3DG266800 Rh4AG242700 Rh4BG140300 Rh4BG140400 Rh4CG033900 Rh5AG093800 Rh5BG377400 Rh5BG426700 Rh5DG440600 Rh6AG048200 Rh6AG074100 Rh6AG148600 Rh6AG196800 Rh6AG406100 Rh7AG362100 Rh7BG138700 Rh7CG380700 Rh7DG335500
rosa_wichuraiana	Rw3G013510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	579
AcuI	CTGAAG	1 cut(s)	279
AdeI	CACNNNGTG	1 cut(s)	580
AfaI	GTAC	2 cut(s)	137, 513
AflIII	ACRYGT	2 cut(s)	163, 354
AgsI	TTSAA	2 cut(s)	127, 248
AluBI	AGCT	1 cut(s)	437
AluI	AGCT	1 cut(s)	437
Alw21I	GWGCWC	1 cut(s)	232
Alw26I	GTCTC	1 cut(s)	205
AlwI	GGATC	1 cut(s)	579
ApeKI	GCWGC	1 cut(s)	437
Asp700I	GAANNNNTTC	1 cut(s)	336
AsuHPI	GGTGA	1 cut(s)	566
Bbv12I	GWGCWC	1 cut(s)	232
BbvI	GCAGC	1 cut(s)	424
BccI	CCATC	2 cut(s)	182, 215
BceAI	ACGGC	1 cut(s)	521
BclI	TGATCA	1 cut(s)	270
BcoDI	GTCTC	1 cut(s)	205
BfaI	CTAG	3 cut(s)	278, 341, 414
BisI	GCNGC	1 cut(s)	438
BlsI	GCNGC	1 cut(s)	439
BmsI	GCATC	1 cut(s)	327
BsaJI	CCNNGG	2 cut(s)	429, 537
Bse1I	ACTGG	1 cut(s)	395
Bse3DI	GCAATG	1 cut(s)	473
BseDI	CCNNGG	2 cut(s)	429, 537
BseGI	GGATG	1 cut(s)	499
BseMI	GCAATG	1 cut(s)	473
BseNI	ACTGG	1 cut(s)	395
BseXI	GCAGC	1 cut(s)	424
BsiHKAI	GWGCWC	1 cut(s)	232
BsmAI	GTCTC	1 cut(s)	205
BsmI	GAATGC	1 cut(s)	67
Bsp1286I	GDGCHC	1 cut(s)	232
Bsp143I	GATC	2 cut(s)	270, 571
BspHI	TCATGA	1 cut(s)	460
BspPI	GGATC	1 cut(s)	579
BsrDI	GCAATG	1 cut(s)	473
BsrI	ACTGG	1 cut(s)	395
BssECI	CCNNGG	2 cut(s)	429, 537
BssMI	GATC	2 cut(s)	270, 571
BssT1I	CCWWGG	1 cut(s)	429
Bst4CI	ACNGT	1 cut(s)	530
BstDEI	CTNAG	1 cut(s)	233
BstDSI	CCRYGG	1 cut(s)	537
BstF5I	GGATG	1 cut(s)	499
BstKTI	GATC	2 cut(s)	273, 574
BstMAI	GTCTC	1 cut(s)	205
BstMBI	GATC	2 cut(s)	270, 571
BstMWI	GCNNNNNNNGC	1 cut(s)	434
BstNSI	RCATGY	2 cut(s)	167, 358
BstV1I	GCAGC	1 cut(s)	424
BtgI	CCRYGG	1 cut(s)	537
BtgZI	GCGATG	2 cut(s)	201, 272
BtsCI	GGATG	1 cut(s)	499
BtsI	GCAGTG	2 cut(s)	232, 373
BtsIMutI	CAGTG	3 cut(s)	232, 373, 402
CciI	TCATGA	1 cut(s)	460
Csp6I	GTAC	2 cut(s)	136, 512
CviAII	CATG	4 cut(s)	164, 268, 355, 461
CviJI	RGCY	6 cut(s)	156, 276, 304, 374, 437, 536
CviKI_1	RGCY	6 cut(s)	156, 276, 304, 374, 437, 536
CviQI	GTAC	2 cut(s)	136, 512
DdeI	CTNAG	1 cut(s)	233
DpnI	GATC	2 cut(s)	272, 573
DpnII	GATC	2 cut(s)	270, 571
DraIII	CACNNNGTG	1 cut(s)	580
Eco130I	CCWWGG	1 cut(s)	429
Eco57I	CTGAAG	1 cut(s)	279
EcoT14I	CCWWGG	1 cut(s)	429
ErhI	CCWWGG	1 cut(s)	429
FaeI	CATG	4 cut(s)	167, 271, 358, 464
FaiI	YATR	9 cut(s)	39, 98, 165, 269, 309, 352, 356, 454, 462
FalI	AAGNNNNNCTT	2 cut(s)	140, 172
FatI	CATG	4 cut(s)	163, 267, 354, 460
FbaI	TGATCA	1 cut(s)	270
Fnu4HI	GCNGC	1 cut(s)	438
FokI	GGATG	1 cut(s)	506
Fsp4HI	GCNGC	1 cut(s)	438
FspBI	CTAG	3 cut(s)	278, 341, 414
GluI	GCNGC	1 cut(s)	438
Hin1II	CATG	4 cut(s)	167, 271, 358, 464
HincII	GTYRAC	1 cut(s)	265
HindII	GTYRAC	1 cut(s)	265
HinfI	GANTC	1 cut(s)	244
HphI	GGTGA	1 cut(s)	566
Hpy166II	GTNNAC	4 cut(s)	169, 265, 346, 499
Hpy188I	TCNGA	2 cut(s)	108, 545
Hpy188III	TCNNGA	3 cut(s)	208, 253, 461
Hpy8I	GTNNAC	4 cut(s)	169, 265, 346, 499
HpyAV	CCTTC	2 cut(s)	305, 467
HpyCH4III	ACNGT	1 cut(s)	530
HpyCH4V	TGCA	3 cut(s)	113, 318, 440
HpyF10VI	GCNNNNNNNGC	1 cut(s)	434
HpyF3I	CTNAG	1 cut(s)	233
Hsp92II	CATG	4 cut(s)	167, 271, 358, 464
Ksp22I	TGATCA	1 cut(s)	270
Kzo9I	GATC	2 cut(s)	270, 571
LmnI	GCTCC	1 cut(s)	434
LpnPI	CCDG	2 cut(s)	266, 408
Lsp1109I	GCAGC	1 cut(s)	424
LweI	GCATC	1 cut(s)	327
MaeI	CTAG	3 cut(s)	278, 341, 414
MaeIII	GTNAC	1 cut(s)	470
MalI	GATC	2 cut(s)	272, 573
MboI	GATC	2 cut(s)	270, 571
MboII	GAAGA	2 cut(s)	156, 290
MhlI	GDGCHC	1 cut(s)	232
MluCI	AATT	3 cut(s)	248, 423, 480
MmeI	TCCRAC	3 cut(s)	350, 381, 523
MnlI	CCTC	4 cut(s)	15, 38, 146, 437
MroXI	GAANNNNTTC	1 cut(s)	336
MseI	TTAA	4 cut(s)	80, 216, 519, 592
MslI	CAYNNNNRTG	1 cut(s)	492
Mva1269I	GAATGC	1 cut(s)	67
MwoI	GCNNNNNNNGC	1 cut(s)	434
NdeII	GATC	2 cut(s)	270, 571
NlaIII	CATG	4 cut(s)	167, 271, 358, 464
NmuCI	GTSAC	1 cut(s)	470
NspI	RCATGY	2 cut(s)	167, 358
PagI	TCATGA	1 cut(s)	460
PciI	ACATGT	2 cut(s)	163, 354
PctI	GAATGC	1 cut(s)	67
PdmI	GAANNNNTTC	1 cut(s)	336
PfeI	GAWTC	1 cut(s)	244
PkrI	GCNGC	1 cut(s)	439
PscI	ACATGT	2 cut(s)	163, 354
RsaI	GTAC	2 cut(s)	137, 513
RsaNI	GTAC	2 cut(s)	136, 512
RseI	CAYNNNNRTG	1 cut(s)	492
SaqAI	TTAA	4 cut(s)	80, 216, 519, 592
SatI	GCNGC	1 cut(s)	438
Sau3AI	GATC	2 cut(s)	270, 571
SduI	GDGCHC	1 cut(s)	232
SetI	ASST	4 cut(s)	141, 297, 439, 459
SfaNI	GCATC	1 cut(s)	327
SmiMI	CAYNNNNRTG	1 cut(s)	492
Sse9I	AATT	3 cut(s)	248, 423, 480
SspMI	CTAG	3 cut(s)	278, 341, 414
StyI	CCWWGG	1 cut(s)	429
TaaI	ACNGT	1 cut(s)	530
TasI	AATT	3 cut(s)	248, 423, 480
TatI	WGTACW	1 cut(s)	511
TfiI	GAWTC	1 cut(s)	244
Tru1I	TTAA	4 cut(s)	80, 216, 519, 592
Tru9I	TTAA	4 cut(s)	80, 216, 519, 592
TscAI	CASTG	3 cut(s)	232, 373, 402
TseFI	GTSAC	1 cut(s)	470
TseI	GCWGC	1 cut(s)	437
Tsp45I	GTSAC	1 cut(s)	470
TspDTI	ATGAA	4 cut(s)	80, 85, 275, 449
TspRI	CASTG	3 cut(s)	232, 373, 402
XceI	RCATGY	2 cut(s)	167, 358
XcmI	CCANNNNNNNNNTGG	3 cut(s)	367, 402, 584
XmnI	GAANNNNTTC	1 cut(s)	336
XspI	CTAG	3 cut(s)	278, 341, 414

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.