Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0001411

Physical Location & Seq

Genomic Coordinates Forward (+)

7366246 .. 7368793

Gene Structure 2548 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0052600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 645 bp

ATGGCTTCTTCTCCTCTCTCCCTAGTCTCTTTCTCTCTAACCTTCCTCTTCTTCCTGTCTCCTGCCTTGTCTACAAACTCTGAAGGAAATGCTTTGCATGCTTTGAGAAGTAGGTTCAATGATGCCACCAATGTTCTTCAGAGTTGGGACCCAACTCTGGTCAATCCCTGCACCTGGTTCCATGTTACCTGTGATGCTAATAACCATGTGATCCGTTTGGATTTGGGCAACTCTAACATTTCTGGGTCTTTGGGGCCAGAGCTTGGGCAGCTGAAGCACCTGGAATACTTGGAGCTTTATAGAAATGATATAGGAGGTAAAATCCCACAGGAGTTGGGGAATTTGAAAAACCTTGTCAGCATGGATTTGTATGGCAACAGATTTGAAGGGAAAATCCCAAAATCTTTCTCCAAGTTGAAGTCACTCAGATTCCTGAGGCTAAACAACAATAAACTATCAGGATCTATTCCAAGGGAACTCACTGGCCTCTCTAACCTCAAAGTTTTTGATGTTTCGAACAATGATCTATGCGGAACTATTCCAGTTGATGGCCCATTTAGCACCTTCTCAATGGAAAGTTTTGAGAACAACAGACTTAGTGGCCCAGAGCTGCAAGGACTGGTACCATATGACTTCGGGTGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000902 GO:0003674 GO:0003735 GO:0003824 GO:0003916 GO:0003918 GO:0005198 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006412 GO:0006518 GO:0006725 GO:0006807 GO:0007049 GO:0007275 GO:0007389 GO:0008094 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009330 GO:0009653 GO:0009719 GO:0009725 GO:0009741 GO:0009888 GO:0009987 GO:0010026 GO:0010033 GO:0010467 GO:0014070 GO:0015935 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016853 GO:0016887 GO:0017111 GO:0019538 GO:0022402 GO:0022613 GO:0030154 GO:0032501 GO:0032502 GO:0032989 GO:0032991 GO:0033993 GO:0034641 GO:0034645 GO:0042023 GO:0042221 GO:0042254 GO:0042623 GO:0042802 GO:0042803 GO:0043043 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043603 GO:0043604 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044446 GO:0044464 GO:0044786 GO:0046483 GO:0046983 GO:0048856 GO:0048869 GO:0050896 GO:0061505 GO:0071704 GO:0071840 GO:0090304 GO:0090558 GO:0140097 GO:1901360 GO:1901564 GO:1901566 GO:1901576 GO:1901700 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HATPase_c HATPase_c_3 Topo-VIb_trans

Protein Analysis

214

Amino Acids

23.65

Weight (kDa)

6.07

Isoelectric Point (pI)

31.82

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRRNT_2	PF08263	26 - 65	2.2e-10	Leucine rich repeat N-terminal domain
LRR_14	PF23598	84 - 173	8.4e-13	Leucine-rich repeat region
LRR_8	PF13855	133 - 176	3.5e-06	Leucine rich repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001411)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0372821 RchiOBHm_Chr2g0120391 RchiOBHm_Chr3g0472751 RchiOBHm_Chr5g0036011 RchiOBHm_Chr6g0269661 RchiOBHm_Chr7g0231021
rosa_laevigata	RLG00000000534 RLG00000003816
rosa_multiflora	Rmu_sc0000084.1_g000050 Rmu_sc0001493.1_g000009 Rmu_sc0001851.1_g000026 Rmu_sc0003198.1_g000001 Rmu_sc0003198.1_g000002 Rmu_sc0004226.1_g000003 Rmu_sc0005738.1_g000004 Rmu_sc0006380.1_g000004 Rmu_sc0012041.1_g000003 Rmu_sc0017397.1_g000001
rosa_roxburghii	Rroxscaffold_4G00313360
rosa_rugosa	Rorug03G0325800 Rorug04G0073800 Rorug06G0052600
rosa_samantha	Rh1CG021400 Rh2CG235800 Rh2DG107900 Rh3AG180200 Rh3BG065800 Rh3BG206400 Rh3CG064500 Rh3CG203500 Rh3CG221800 Rh3CG270900 Rh3DG065700 Rh3DG132500 Rh3DG266800 Rh4AG242700 Rh4BG140300 Rh4BG140400 Rh4CG033900 Rh5AG093800 Rh5BG377400 Rh5BG426700 Rh5DG440600 Rh6AG048200 Rh6AG074100 Rh6AG148600 Rh6AG196800 Rh6AG406100 Rh7AG362100 Rh7BG138700 Rh7CG380700 Rh7DG335500
rosa_wichuraiana	Rw3G013510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	622
AccB1I	GGYRCC	1 cut(s)	622
AccB7I	CCANNNNNTGG	2 cut(s)	263, 548
AccI	GTMKAC	1 cut(s)	71
AciI	CCGC	1 cut(s)	531
AclWI	GGATC	2 cut(s)	205, 469
AcsI	RAATTY	1 cut(s)	340
AcuI	CTGAAG	3 cut(s)	102, 122, 293
AfaI	GTAC	1 cut(s)	624
AfiI	CCNNNNNNNGG	4 cut(s)	157, 174, 263, 548
AgsI	TTSAA	4 cut(s)	118, 346, 386, 418
AjnI	CCWGG	2 cut(s)	173, 279
AluBI	AGCT	4 cut(s)	262, 271, 295, 610
AluI	AGCT	4 cut(s)	262, 271, 295, 610
Alw26I	GTCTC	2 cut(s)	31, 63
AlwI	GGATC	2 cut(s)	205, 469
AoxI	GGCC	4 cut(s)	254, 484, 550, 601
ApeKI	GCWGC	2 cut(s)	268, 610
ApoI	RAATTY	1 cut(s)	340
Asp718I	GGTACC	1 cut(s)	622
AspS9I	GGNCC	4 cut(s)	148, 254, 551, 602
AsuII	TTCGAA	1 cut(s)	515
AvaII	GGWCC	1 cut(s)	148
AxyI	CCTNAGG	1 cut(s)	434
BanI	GGYRCC	1 cut(s)	622
BbvI	GCAGC	2 cut(s)	280, 597
BccI	CCATC	1 cut(s)	542
BciT130I	CCWGG	2 cut(s)	175, 281
BcoDI	GTCTC	2 cut(s)	31, 63
BfaI	CTAG	1 cut(s)	23
BisI	GCNGC	2 cut(s)	269, 611
BlsI	GCNGC	2 cut(s)	270, 612
Bme1390I	CCNGG	2 cut(s)	175, 281
Bme18I	GGWCC	1 cut(s)	148
BmgT120I	GGNCC	4 cut(s)	148, 254, 551, 602
BmiI	GGNNCC	5 cut(s)	149, 150, 179, 255, 624
BmrFI	CCNGG	2 cut(s)	175, 281
BmsI	GCATC	2 cut(s)	112, 184
Bpu14I	TTCGAA	1 cut(s)	515
BsaJI	CCNNGG	1 cut(s)	470
Bsc4I	CCNNNNNNNGG	4 cut(s)	157, 174, 263, 548
Bse1I	ACTGG	3 cut(s)	487, 542, 624
Bse21I	CCTNAGG	1 cut(s)	434
BseBI	CCWGG	2 cut(s)	175, 281
BseDI	CCNNGG	1 cut(s)	470
BseLI	CCNNNNNNNGG	4 cut(s)	157, 174, 263, 548
BseMII	CTCAG	2 cut(s)	425, 439
BseNI	ACTGG	3 cut(s)	487, 542, 624
BseXI	GCAGC	2 cut(s)	280, 597
BsgI	GTGCAG	1 cut(s)	154
BshFI	GGCC	4 cut(s)	256, 486, 552, 603
BshNI	GGYRCC	1 cut(s)	622
BslFI	GGGAC	1 cut(s)	161
BslI	CCNNNNNNNGG	4 cut(s)	157, 174, 263, 548
BsmAI	GTCTC	2 cut(s)	31, 63
BsmFI	GGGAC	1 cut(s)	161
BsnI	GGCC	4 cut(s)	256, 486, 552, 603
Bsp119I	TTCGAA	1 cut(s)	515
Bsp143I	GATC	3 cut(s)	210, 461, 523
BspACI	CCGC	1 cut(s)	531
BspANI	GGCC	4 cut(s)	256, 486, 552, 603
BspCNI	CTCAG	2 cut(s)	426, 438
BspLI	GGNNCC	5 cut(s)	149, 150, 179, 255, 624
BspPI	GGATC	2 cut(s)	205, 469
BspT104I	TTCGAA	1 cut(s)	515
BspT107I	GGYRCC	1 cut(s)	622
BsrI	ACTGG	3 cut(s)	487, 542, 624
BssECI	CCNNGG	1 cut(s)	470
BssMI	GATC	3 cut(s)	210, 461, 523
BssT1I	CCWWGG	1 cut(s)	470
Bst2UI	CCWGG	2 cut(s)	175, 281
Bst6I	CTCTTC	1 cut(s)	53
BstBI	TTCGAA	1 cut(s)	515
BstC8I	GCNNGC	1 cut(s)	99
BstDEI	CTNAG	3 cut(s)	425, 434, 596
BstKTI	GATC	3 cut(s)	213, 464, 526
BstMAI	GTCTC	2 cut(s)	31, 63
BstMBI	GATC	3 cut(s)	210, 461, 523
BstMWI	GCNNNNNNNGC	4 cut(s)	98, 268, 274, 558
BstNI	CCWGG	2 cut(s)	175, 281
BstNSI	RCATGY	1 cut(s)	101
BstSCI	CCNGG	2 cut(s)	173, 279
BstV1I	GCAGC	2 cut(s)	280, 597
BstX2I	RGATCY	1 cut(s)	461
BstYI	RGATCY	1 cut(s)	461
Bsu36I	CCTNAGG	1 cut(s)	434
BsuRI	GGCC	4 cut(s)	256, 486, 552, 603
BtsIMutI	CAGTG	1 cut(s)	480
Cac8I	GCNNGC	1 cut(s)	99
Cfr13I	GGNCC	4 cut(s)	148, 254, 551, 602
CsiI	ACCWGGT	1 cut(s)	173
Csp6I	GTAC	1 cut(s)	623
CspCI	CAANNNNNGTGG	2 cut(s)	315, 350
CviAII	CATG	4 cut(s)	98, 182, 206, 361
CviQI	GTAC	1 cut(s)	623
DdeI	CTNAG	3 cut(s)	425, 434, 596
DpnI	GATC	3 cut(s)	212, 463, 525
DpnII	GATC	3 cut(s)	210, 461, 523
Eam1104I	CTCTTC	1 cut(s)	53
EarI	CTCTTC	1 cut(s)	53
Eco130I	CCWWGG	1 cut(s)	470
Eco47I	GGWCC	1 cut(s)	148
Eco57I	CTGAAG	3 cut(s)	102, 122, 293
Eco81I	CCTNAGG	1 cut(s)	434
EcoO109I	RGGNCCY	1 cut(s)	148
EcoRII	CCWGG	2 cut(s)	173, 279
EcoT14I	CCWWGG	1 cut(s)	470
ErhI	CCWWGG	1 cut(s)	470
FaeI	CATG	4 cut(s)	101, 185, 209, 364
FaqI	GGGAC	1 cut(s)	161
FatI	CATG	4 cut(s)	97, 181, 205, 360
FauNDI	CATATG	1 cut(s)	628
FblI	GTMKAC	1 cut(s)	71
Fnu4HI	GCNGC	2 cut(s)	269, 611
Fsp4HI	GCNGC	2 cut(s)	269, 611
FspBI	CTAG	1 cut(s)	23
GluI	GCNGC	2 cut(s)	269, 611
HaeIII	GGCC	4 cut(s)	256, 486, 552, 603
Hin1II	CATG	4 cut(s)	101, 185, 209, 364
HinfI	GANTC	1 cut(s)	429
Hpy166II	GTNNAC	1 cut(s)	72
Hpy188I	TCNGA	3 cut(s)	82, 141, 428
Hpy188III	TCNNGA	2 cut(s)	433, 459
Hpy8I	GTNNAC	1 cut(s)	72
HpyAV	CCTTC	4 cut(s)	52, 77, 380, 574
HpyCH4V	TGCA	3 cut(s)	97, 171, 613
HpyF10VI	GCNNNNNNNGC	4 cut(s)	98, 268, 274, 558
HpyF3I	CTNAG	3 cut(s)	425, 434, 596
Hsp92II	CATG	4 cut(s)	101, 185, 209, 364
KflI	GGGWCCC	1 cut(s)	148
KpnI	GGTACC	1 cut(s)	626
Kzo9I	GATC	3 cut(s)	210, 461, 523
LmnI	GCTCC	1 cut(s)	292
Lsp1109I	GCAGC	2 cut(s)	280, 597
LweI	GCATC	2 cut(s)	112, 184
MabI	ACCWGGT	1 cut(s)	173
MaeI	CTAG	1 cut(s)	23
MaeIII	GTNAC	2 cut(s)	184, 420
MalI	GATC	3 cut(s)	212, 463, 525
MboI	GATC	3 cut(s)	210, 461, 523
MboII	GAAGA	3 cut(s)	40, 43, 128
MflI	RGATCY	1 cut(s)	461
MluCI	AATT	1 cut(s)	340
MnlI	CCTC	6 cut(s)	24, 56, 308, 429, 497, 506
MspA1I	CMGCKG	1 cut(s)	271
MspR9I	CCNGG	2 cut(s)	175, 281
MvaI	CCWGG	2 cut(s)	175, 281
MwoI	GCNNNNNNNGC	4 cut(s)	98, 268, 274, 558
NdeI	CATATG	1 cut(s)	628
NdeII	GATC	3 cut(s)	210, 461, 523
NlaIII	CATG	4 cut(s)	101, 185, 209, 364
NlaIV	GGNNCC	5 cut(s)	149, 150, 179, 255, 624
NmuCI	GTSAC	1 cut(s)	420
NspI	RCATGY	1 cut(s)	101
NspV	TTCGAA	1 cut(s)	515
PaeI	GCATGC	1 cut(s)	101
PfeI	GAWTC	1 cut(s)	429
PflMI	CCANNNNNTGG	2 cut(s)	263, 548
PkrI	GCNGC	2 cut(s)	270, 612
PpuMI	RGGWCCY	1 cut(s)	148
Psp5II	RGGWCCY	1 cut(s)	148
Psp6I	CCWGG	2 cut(s)	173, 279
PspGI	CCWGG	2 cut(s)	173, 279
PspN4I	GGNNCC	5 cut(s)	149, 150, 179, 255, 624
PspPI	GGNCC	4 cut(s)	148, 254, 551, 602
PspPPI	RGGWCCY	1 cut(s)	148
PsuI	RGATCY	1 cut(s)	461
PvuII	CAGCTG	1 cut(s)	271
RsaI	GTAC	1 cut(s)	624
RsaNI	GTAC	1 cut(s)	623
SatI	GCNGC	2 cut(s)	269, 611
Sau3AI	GATC	3 cut(s)	210, 461, 523
Sau96I	GGNCC	4 cut(s)	148, 254, 551, 602
ScrFI	CCNGG	2 cut(s)	175, 281
SexAI	ACCWGGT	1 cut(s)	173
SfaNI	GCATC	2 cut(s)	112, 184
SfuI	TTCGAA	1 cut(s)	515
SinI	GGWCC	1 cut(s)	148
SphI	GCATGC	1 cut(s)	101
Sse9I	AATT	1 cut(s)	340
SsiI	CCGC	1 cut(s)	531
SspMI	CTAG	1 cut(s)	23
StyD4I	CCNGG	2 cut(s)	173, 279
StyI	CCWWGG	1 cut(s)	470
TaqI	TCGA	1 cut(s)	515
TasI	AATT	1 cut(s)	340
TfiI	GAWTC	1 cut(s)	429
TscAI	CASTG	1 cut(s)	487
TseFI	GTSAC	1 cut(s)	420
TseI	GCWGC	2 cut(s)	268, 610
Tsp45I	GTSAC	1 cut(s)	420
TspGWI	ACGGA	1 cut(s)	203
TspRI	CASTG	1 cut(s)	487
Van91I	CCANNNNNTGG	2 cut(s)	263, 548
VpaK11BI	GGWCC	1 cut(s)	148
XapI	RAATTY	1 cut(s)	340
XceI	RCATGY	1 cut(s)	101
XmiI	GTMKAC	1 cut(s)	71
XspI	CTAG	1 cut(s)	23

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.