Rh4AG242700
ERF Family

Belongs to the protein kinase superfamily. Ser Thr protein kinase family

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4A
Physical Location & Seq
Reverse (-)
55067895 .. 55068283
389 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4AG242700.1

Sequence Viewer

Length: 327 bp
ATGATCAGCCTAGCAGTTCATCACAACCTTCTCTGGCTTTATGGGTTTCGCATCACTCCAACAGAAAGACTTCTAGTTTACCCATACATGTCCATTGGCAATGTGGCTTCTCGTGTCAAAGGGAAACTAGTGTTGGATTGGGGAACTAGGAAATGGATTGCCTTGGGAGCTACAAGAGGATTGTTATACCTTCATGAGCAGTGTGACCCGAAAATTATCTACATGGATGTGAAGGTAGCAAATGTACTTCTTGATGACTACTGTGAAGCCGTGGTCGGGGATTTTGATTTGGCAAAGCTTTTCGATCACCAAGTGTTCTGTGGTTAA

Protein Analysis

108

Amino Acids

12.34

Weight (kDa)

6.88

Isoelectric Point (pI)

24.48

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pkinase PF00069 5 - 104 1.8e-12 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 5 - 101 2.3e-07 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AdeI CACNNNGTG 1 cut(s) 313
AfaI GTAC 1 cut(s) 246
AfiI CCNNNNNNNGG 1 cut(s) 276
AflIII ACRYGT 1 cut(s) 87
AhlI ACTAGT 1 cut(s) 127
AjuI GAANNNNNNNTTGG 2 cut(s) 116, 148
AluBI AGCT 2 cut(s) 170, 298
AluI AGCT 2 cut(s) 170, 298
Asp700I GAANNNNTTC 1 cut(s) 69
AsuHPI GGTGA 1 cut(s) 299
BauI CACGAG 1 cut(s) 111
BceAI ACGGC 1 cut(s) 254
BclI TGATCA 1 cut(s) 3
BcuI ACTAGT 1 cut(s) 127
BfaI CTAG 4 cut(s) 11, 74, 128, 147
BmsI GCATC 1 cut(s) 60
BsaJI CCNNGG 2 cut(s) 162, 270
Bsc4I CCNNNNNNNGG 1 cut(s) 276
Bse3DI GCAATG 1 cut(s) 106
BseDI CCNNGG 2 cut(s) 162, 270
BseGI GGATG 1 cut(s) 232
BseLI CCNNNNNNNGG 1 cut(s) 276
BseMI GCAATG 1 cut(s) 106
BslI CCNNNNNNNGG 1 cut(s) 276
Bsp143I GATC 2 cut(s) 3, 304
BspHI TCATGA 1 cut(s) 193
BsrDI GCAATG 1 cut(s) 106
BssECI CCNNGG 2 cut(s) 162, 270
BssMI GATC 2 cut(s) 3, 304
BssSI CACGAG 1 cut(s) 111
BssT1I CCWWGG 1 cut(s) 162
Bst2BI CACGAG 1 cut(s) 111
Bst4CI ACNGT 1 cut(s) 263
BstDSI CCRYGG 1 cut(s) 270
BstF5I GGATG 1 cut(s) 232
BstKTI GATC 2 cut(s) 6, 307
BstMBI GATC 2 cut(s) 3, 304
BstMWI GCNNNNNNNGC 1 cut(s) 167
BstNSI RCATGY 1 cut(s) 91
BtgI CCRYGG 1 cut(s) 270
BtsCI GGATG 1 cut(s) 232
BtsI GCAGTG 1 cut(s) 206
BtsIMutI CAGTG 1 cut(s) 206
CciI TCATGA 1 cut(s) 193
Csp6I GTAC 1 cut(s) 245
CviAII CATG 3 cut(s) 88, 194, 223
CviJI RGCY 6 cut(s) 9, 37, 107, 170, 269, 298
CviKI_1 RGCY 6 cut(s) 9, 37, 107, 170, 269, 298
CviQI GTAC 1 cut(s) 245
DpnI GATC 2 cut(s) 5, 306
DpnII GATC 2 cut(s) 3, 304
DraIII CACNNNGTG 1 cut(s) 313
Eco130I CCWWGG 1 cut(s) 162
EcoT14I CCWWGG 1 cut(s) 162
ErhI CCWWGG 1 cut(s) 162
FaeI CATG 3 cut(s) 91, 197, 226
FaiI YATR 6 cut(s) 42, 85, 89, 187, 195, 224
FatI CATG 3 cut(s) 87, 193, 222
FbaI TGATCA 1 cut(s) 3
FokI GGATG 1 cut(s) 239
FspBI CTAG 4 cut(s) 11, 74, 128, 147
Hin1II CATG 3 cut(s) 91, 197, 226
HindIII AAGCTT 1 cut(s) 296
HphI GGTGA 1 cut(s) 299
Hpy166II GTNNAC 1 cut(s) 79
Hpy188III TCNNGA 2 cut(s) 194, 251
Hpy8I GTNNAC 1 cut(s) 79
HpyAV CCTTC 3 cut(s) 38, 200, 226
HpyCH4III ACNGT 1 cut(s) 263
HpyF10VI GCNNNNNNNGC 1 cut(s) 167
Hsp92II CATG 3 cut(s) 91, 197, 226
Ksp22I TGATCA 1 cut(s) 3
Kzo9I GATC 2 cut(s) 3, 304
LmnI GCTCC 1 cut(s) 167
LpnPI CCDG 1 cut(s) 19
LweI GCATC 1 cut(s) 60
MaeI CTAG 4 cut(s) 11, 74, 128, 147
MaeIII GTNAC 1 cut(s) 203
MalI GATC 2 cut(s) 5, 306
MboI GATC 2 cut(s) 3, 304
MluCI AATT 1 cut(s) 213
MmeI TCCRAC 2 cut(s) 83, 114
MnlI CCTC 1 cut(s) 170
MroXI GAANNNNTTC 1 cut(s) 69
MseI TTAA 1 cut(s) 325
MslI CAYNNNNRTG 1 cut(s) 227
MwoI GCNNNNNNNGC 1 cut(s) 167
NdeII GATC 2 cut(s) 3, 304
NlaIII CATG 3 cut(s) 91, 197, 226
NmuCI GTSAC 1 cut(s) 203
NspI RCATGY 1 cut(s) 91
PagI TCATGA 1 cut(s) 193
PciI ACATGT 1 cut(s) 87
PdmI GAANNNNTTC 1 cut(s) 69
PscI ACATGT 1 cut(s) 87
RsaI GTAC 1 cut(s) 246
RsaNI GTAC 1 cut(s) 245
RseI CAYNNNNRTG 1 cut(s) 227
SaqAI TTAA 1 cut(s) 325
Sau3AI GATC 2 cut(s) 3, 304
SetI ASST 5 cut(s) 30, 172, 192, 237, 300
SfaNI GCATC 1 cut(s) 60
SmiMI CAYNNNNRTG 1 cut(s) 227
SpeI ACTAGT 1 cut(s) 127
Sse9I AATT 1 cut(s) 213
SspMI CTAG 4 cut(s) 11, 74, 128, 147
StyI CCWWGG 1 cut(s) 162
TaaI ACNGT 1 cut(s) 263
TaqI TCGA 1 cut(s) 303
TasI AATT 1 cut(s) 213
TatI WGTACW 1 cut(s) 244
Tru1I TTAA 1 cut(s) 325
Tru9I TTAA 1 cut(s) 325
TscAI CASTG 1 cut(s) 206
TseFI GTSAC 1 cut(s) 203
Tsp45I GTSAC 1 cut(s) 203
TspDTI ATGAA 2 cut(s) 8, 182
TspRI CASTG 1 cut(s) 206
XceI RCATGY 1 cut(s) 91
XcmI CCANNNNNNNNNTGG 2 cut(s) 100, 317
XmnI GAANNNNTTC 1 cut(s) 69
XspI CTAG 4 cut(s) 11, 74, 128, 147
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.