Rh6AG048200
ERF Family

Belongs to the protein kinase superfamily. Ser Thr protein kinase family

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
Physical Location & Seq
Reverse (-)
6991219 .. 7007855
16637 bp
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UTR
Exon/CDS
Intron
Rh6AG048200.1

Sequence Viewer

Length: 600 bp
ATGAAAATGTTGTCTAACTGTATTCACTATCTCTGCAGCAAACGCTCTAGCTACCTAAACAAGCATCATGAAGAAATTTCACTCGGGAACTTGAAGAGATTTCATTTCATAGAACTTTCGATTGCAACAAATAACTTCAGCAGCAAGTACCTACTAAGAAAGGGAGGCTTTGAACATGTTTACAAAGGAACTATCTGCGATGGCACTGTCGTAGCAGTCAAGAGACTTAAAGATGGCAGTGCTCTTGGTGGAGAGATTCAATTCCAGACTGAAGTTGAAATGATTAGCCTAGCAGTTCATCGCAACCTTCTTCGGCTTTATGGGTTTTGCATCACTCCAACAGAAAGACTTTTAGTTTACCCATACATGTCCAATAGCAATGTGGCTTCTCGTGTCAAAGGTTTTTGTGTAGAACGCAGCCCTCCAATTGATATTCCCATTTTGTTATTTCAGGTGAAGACTGCCTTACCAGTTCTTCAACAACTTAATTACTTGAATGATGAAGTAGTCTTGACAGATGCTTGTTGGGCGCTATCATATCTCTCAGATGACCCAAATGACAAAATTCAGGCTGTGATTGAAGCAGGCATCTACCAATGA

Protein Analysis

199

Amino Acids

22.54

Weight (kDa)

8.17

Isoelectric Point (pI)

48.37

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PK_Tyr_Ser-Thr PF07714 52 - 183 3.8e-10 Protein tyrosine and serine/threonine kinase
Pkinase PF00069 52 - 133 2.8e-07 Protein kinase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 2 cut(s) 75, 564
AcuI CTGAAG 2 cut(s) 121, 291
AfaI GTAC 1 cut(s) 149
AflIII ACRYGT 2 cut(s) 175, 366
AgsI TTSAA 7 cut(s) 94, 173, 260, 278, 479, 496, 581
AluBI AGCT 1 cut(s) 51
AluI AGCT 1 cut(s) 51
Alw21I GWGCWC 1 cut(s) 244
Alw26I GTCTC 1 cut(s) 217
Ama87I CYCGRG 1 cut(s) 83
ApeKI GCWGC 3 cut(s) 36, 141, 417
ApoI RAATTY 2 cut(s) 75, 564
AspLEI GCGC 1 cut(s) 532
AsuHPI GGTGA 1 cut(s) 466
AvaI CYCGRG 1 cut(s) 83
BauI CACGAG 1 cut(s) 390
BbsI GAAGAC 1 cut(s) 464
Bbv12I GWGCWC 1 cut(s) 244
BbvI GCAGC 3 cut(s) 48, 153, 429
BccI CCATC 2 cut(s) 194, 227
BcoDI GTCTC 1 cut(s) 217
BfaI CTAG 2 cut(s) 48, 290
BfmI CTRYAG 1 cut(s) 34
BfoI RGCGCY 1 cut(s) 533
BisI GCNGC 3 cut(s) 37, 142, 418
BlsI GCNGC 3 cut(s) 38, 143, 419
BmeT110I CYCGRG 1 cut(s) 83
BmsI GCATC 3 cut(s) 73, 339, 508
BpiI GAAGAC 1 cut(s) 464
Bse1I ACTGG 1 cut(s) 470
Bse3DI GCAATG 1 cut(s) 385
BseMI GCAATG 1 cut(s) 385
BseMII CTCAG 1 cut(s) 558
BseNI ACTGG 1 cut(s) 470
BseXI GCAGC 3 cut(s) 48, 153, 429
BsiHKAI GWGCWC 1 cut(s) 244
BsiHKCI CYCGRG 1 cut(s) 83
BsmAI GTCTC 1 cut(s) 217
BsoBI CYCGRG 1 cut(s) 83
Bsp1286I GDGCHC 1 cut(s) 244
BspCNI CTCAG 1 cut(s) 557
BspHI TCATGA 1 cut(s) 67
BspMAI CTGCAG 1 cut(s) 38
BsrDI GCAATG 1 cut(s) 385
BsrI ACTGG 1 cut(s) 470
BssSI CACGAG 1 cut(s) 390
Bst2BI CACGAG 1 cut(s) 390
Bst4CI ACNGT 2 cut(s) 20, 208
Bst6I CTCTTC 1 cut(s) 89
BstC8I GCNNGC 1 cut(s) 586
BstDEI CTNAG 2 cut(s) 155, 544
BstH2I RGCGCY 1 cut(s) 533
BstHHI GCGC 1 cut(s) 532
BstMAI GTCTC 1 cut(s) 217
BstMWI GCNNNNNNNGC 2 cut(s) 42, 527
BstNSI RCATGY 2 cut(s) 179, 370
BstSFI CTRYAG 1 cut(s) 34
BstV1I GCAGC 3 cut(s) 48, 153, 429
BstV2I GAAGAC 1 cut(s) 464
BtgZI GCGATG 2 cut(s) 213, 284
BtsI GCAGTG 1 cut(s) 244
BtsIMutI CAGTG 2 cut(s) 204, 244
Cac8I GCNNGC 1 cut(s) 586
CciI TCATGA 1 cut(s) 67
CfoI GCGC 1 cut(s) 532
Csp6I GTAC 1 cut(s) 148
CviAII CATG 3 cut(s) 68, 176, 367
CviJI RGCY 7 cut(s) 51, 168, 288, 316, 386, 420, 572
CviKI_1 RGCY 7 cut(s) 51, 168, 288, 316, 386, 420, 572
CviQI GTAC 1 cut(s) 148
DdeI CTNAG 2 cut(s) 155, 544
Eam1104I CTCTTC 1 cut(s) 89
EarI CTCTTC 1 cut(s) 89
Eco57I CTGAAG 2 cut(s) 121, 291
Eco88I CYCGRG 1 cut(s) 83
FaeI CATG 3 cut(s) 71, 179, 370
FaiI YATR 7 cut(s) 69, 110, 177, 321, 364, 368, 538
FalI AAGNNNNNCTT 4 cut(s) 152, 184, 449, 481
FatI CATG 3 cut(s) 67, 175, 366
Fnu4HI GCNGC 3 cut(s) 37, 142, 418
Fsp4HI GCNGC 3 cut(s) 37, 142, 418
FspBI CTAG 2 cut(s) 48, 290
GlaI GCGC 1 cut(s) 531
GluI GCNGC 3 cut(s) 37, 142, 418
HaeII RGCGCY 1 cut(s) 533
HhaI GCGC 1 cut(s) 532
Hin1II CATG 3 cut(s) 71, 179, 370
Hin6I GCGC 1 cut(s) 530
HinP1I GCGC 1 cut(s) 530
HinfI GANTC 1 cut(s) 256
HphI GGTGA 1 cut(s) 466
Hpy166II GTNNAC 2 cut(s) 181, 358
Hpy188I TCNGA 1 cut(s) 547
Hpy188III TCNNGA 5 cut(s) 68, 85, 220, 265, 511
Hpy8I GTNNAC 2 cut(s) 181, 358
HpyAV CCTTC 1 cut(s) 317
HpyCH4III ACNGT 2 cut(s) 20, 208
HpyCH4V TGCA 3 cut(s) 36, 125, 330
HpyF10VI GCNNNNNNNGC 2 cut(s) 42, 527
HpyF3I CTNAG 2 cut(s) 155, 544
Hsp92II CATG 3 cut(s) 71, 179, 370
HspAI GCGC 1 cut(s) 530
LpnPI CCDG 5 cut(s) 278, 437, 483, 554, 570
Lsp1109I GCAGC 3 cut(s) 48, 153, 429
LweI GCATC 3 cut(s) 73, 339, 508
MaeI CTAG 2 cut(s) 48, 290
MboII GAAGA 5 cut(s) 83, 106, 302, 467, 469
MfeI CAATTG 1 cut(s) 426
MhlI GDGCHC 1 cut(s) 244
MluCI AATT 5 cut(s) 75, 260, 426, 487, 564
MmeI TCCRAC 1 cut(s) 362
MnlI CCTC 2 cut(s) 158, 432
MseI TTAA 2 cut(s) 228, 486
MunI CAATTG 1 cut(s) 426
MwoI GCNNNNNNNGC 2 cut(s) 42, 527
NlaIII CATG 3 cut(s) 71, 179, 370
NspI RCATGY 2 cut(s) 179, 370
PagI TCATGA 1 cut(s) 67
PciI ACATGT 2 cut(s) 175, 366
PfeI GAWTC 1 cut(s) 256
PkrI GCNGC 3 cut(s) 38, 143, 419
PscI ACATGT 2 cut(s) 175, 366
PstI CTGCAG 1 cut(s) 38
RsaI GTAC 1 cut(s) 149
RsaNI GTAC 1 cut(s) 148
SaqAI TTAA 2 cut(s) 228, 486
SatI GCNGC 3 cut(s) 37, 142, 418
SduI GDGCHC 1 cut(s) 244
SetI ASST 6 cut(s) 53, 57, 153, 309, 403, 456
SfaNI GCATC 3 cut(s) 73, 339, 508
SfcI CTRYAG 1 cut(s) 34
Sse9I AATT 5 cut(s) 75, 260, 426, 487, 564
SspMI CTAG 2 cut(s) 48, 290
TaaI ACNGT 2 cut(s) 20, 208
TaqI TCGA 1 cut(s) 119
TasI AATT 5 cut(s) 75, 260, 426, 487, 564
TfiI GAWTC 1 cut(s) 256
Tru1I TTAA 2 cut(s) 228, 486
Tru9I TTAA 2 cut(s) 228, 486
TscAI CASTG 2 cut(s) 211, 244
TseI GCWGC 3 cut(s) 36, 141, 417
TspDTI ATGAA 6 cut(s) 17, 84, 92, 97, 287, 516
TspRI CASTG 2 cut(s) 211, 244
XapI RAATTY 2 cut(s) 75, 564
XceI RCATGY 2 cut(s) 179, 370
XcmI CCANNNNNNNNNTGG 1 cut(s) 379
XspI CTAG 2 cut(s) 48, 290
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.