Rh7AG362100

ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
OG0001411
Physical Location & Seq
Forward (+)
46607440 .. 46608649
1210 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7AG362100.1

Sequence Viewer

Length: 594 bp
ATGGAGGAGAAGTATGGCCTATGGCGGACGCTCTCGAAGGATGTCTATTCCATTGACTTACAGAGTCAATTGCATGGTAGATCGTTTGGTTTAAATCCGCGCCCTAAATTGTGGTCATTGAAGGCCCCCGAGCTCAGTGTGACTGGATTAGTTCGCGGGCGTGATGAAGAACTTGATTTGGGGGTTAGAGATTTGGAAGGGGCTGTTGTAAGATCGGGGATGGTTGCGCTTGTATCGTCTTCGAAACGTCGTAAGCTCACCTGGGAGGAGCCTATGAATGAAGTGTTAATGTCTGACTCAGAAGGTGTTCAGGGTCGGGAAGATGAGGGGGAGCATCAGGATATTGAGAAGAAGGATAATATGAATGTTTCTGTAATTGATGCTACAACAGGCTTCATTGATGTGTTAGCTCTGATTGAAGGCAAGCAGGTGAGATTGACTGGGTTTTATGGTTGTTCGAAAACTAGTGAGAGGTGTCATTCATGGGAAGCGCTCCGACGTCTCTCACATTTATATCCTCATGTTGCATGGTTCGTGTTTGGAGATTTCAATGAGATCCTTAAAAGTGAGGAGAAATGTGGAGGCAGATTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_1 RVT_3 zf-CCHC_4 zf-RVT

Protein Analysis

197

Amino Acids

22.34

Weight (kDa)

5.62

Isoelectric Point (pI)

53.07

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 418
AatII GACGTC 1 cut(s) 502
Acc36I ACCTGC 1 cut(s) 418
AccII CGCG 2 cut(s) 100, 156
AciI CCGC 3 cut(s) 25, 98, 156
AclWI GGATC 1 cut(s) 550
AcyI GRCGYC 1 cut(s) 499
AfeI AGCGCT 1 cut(s) 492
AgsI TTSAA 3 cut(s) 121, 419, 550
AhlI ACTAGT 1 cut(s) 464
AjnI CCWGG 1 cut(s) 260
AluBI AGCT 3 cut(s) 133, 256, 410
AluI AGCT 3 cut(s) 133, 256, 410
Alw21I GWGCWC 1 cut(s) 135
Alw26I GTCTC 1 cut(s) 506
AlwI GGATC 1 cut(s) 550
Ama87I CYCGRG 1 cut(s) 128
Aor51HI AGCGCT 1 cut(s) 492
AoxI GGCC 2 cut(s) 16, 123
Asp700I GAANNNNTTC 1 cut(s) 306
AspLEI GCGC 3 cut(s) 102, 229, 493
AspS9I GGNCC 1 cut(s) 124
AsuHPI GGTGA 2 cut(s) 250, 442
AsuII TTCGAA 2 cut(s) 242, 458
AvaI CYCGRG 1 cut(s) 128
BanII GRGCYC 1 cut(s) 135
BbsI GAAGAC 1 cut(s) 231
Bbv12I GWGCWC 1 cut(s) 135
BccI CCATC 1 cut(s) 214
BciT130I CCWGG 1 cut(s) 262
BcoDI GTCTC 1 cut(s) 506
BcuI ACTAGT 1 cut(s) 464
BfaI CTAG 1 cut(s) 465
BfoI RGCGCY 1 cut(s) 494
BfuAI ACCTGC 1 cut(s) 418
Bme1390I CCNGG 1 cut(s) 262
BmeT110I CYCGRG 1 cut(s) 128
BmgT120I GGNCC 1 cut(s) 124
BmiI GGNNCC 2 cut(s) 126, 270
BmrFI CCNGG 1 cut(s) 262
BmrI ACTGGG 1 cut(s) 450
BmsI GCATC 2 cut(s) 343, 370
BmuI ACTGGG 1 cut(s) 450
BpiI GAAGAC 1 cut(s) 231
Bpu14I TTCGAA 2 cut(s) 242, 458
BsaHI GRCGYC 1 cut(s) 499
BsaJI CCNNGG 1 cut(s) 261
BsaXI ACNNNNNCTCC 1 cut(s) 26
Bse1I ACTGG 2 cut(s) 148, 445
BseBI CCWGG 1 cut(s) 262
BseDI CCNNGG 1 cut(s) 261
BseGI GGATG 2 cut(s) 46, 225
BseMII CTCAG 2 cut(s) 148, 312
BseNI ACTGG 2 cut(s) 148, 445
BseRI GAGGAG 3 cut(s) 20, 281, 584
Bsh1236I CGCG 2 cut(s) 100, 156
BshFI GGCC 2 cut(s) 18, 125
BsiHKAI GWGCWC 1 cut(s) 135
BsiHKCI CYCGRG 1 cut(s) 128
BsmAI GTCTC 1 cut(s) 506
BsmBI CGTCTC 1 cut(s) 506
BsnI GGCC 2 cut(s) 18, 125
BsoBI CYCGRG 1 cut(s) 128
Bsp119I TTCGAA 2 cut(s) 242, 458
Bsp1286I GDGCHC 1 cut(s) 135
Bsp143I GATC 3 cut(s) 80, 212, 555
BspACI CCGC 3 cut(s) 25, 98, 156
BspANI GGCC 2 cut(s) 18, 125
BspCNI CTCAG 2 cut(s) 147, 311
BspFNI CGCG 2 cut(s) 100, 156
BspLI GGNNCC 2 cut(s) 126, 270
BspMI ACCTGC 1 cut(s) 418
BspPI GGATC 1 cut(s) 550
BspT104I TTCGAA 2 cut(s) 242, 458
BsrI ACTGG 2 cut(s) 148, 445
BssECI CCNNGG 1 cut(s) 261
BssMI GATC 3 cut(s) 80, 212, 555
BssNI GRCGYC 1 cut(s) 499
Bst2UI CCWGG 1 cut(s) 262
BstACI GRCGYC 1 cut(s) 499
BstBI TTCGAA 2 cut(s) 242, 458
BstC8I GCNNGC 2 cut(s) 158, 425
BstDEI CTNAG 2 cut(s) 134, 298
BstF5I GGATG 2 cut(s) 46, 225
BstFNI CGCG 2 cut(s) 100, 156
BstH2I RGCGCY 1 cut(s) 494
BstHHI GCGC 3 cut(s) 102, 229, 493
BstKTI GATC 3 cut(s) 83, 215, 558
BstMAI GTCTC 1 cut(s) 506
BstMBI GATC 3 cut(s) 80, 212, 555
BstNI CCWGG 1 cut(s) 262
BstSCI CCNGG 1 cut(s) 260
BstUI CGCG 2 cut(s) 100, 156
BstV2I GAAGAC 1 cut(s) 231
BstX2I RGATCY 1 cut(s) 555
BstYI RGATCY 1 cut(s) 555
BsuRI GGCC 2 cut(s) 18, 125
BtsCI GGATG 2 cut(s) 46, 225
BtsIMutI CAGTG 1 cut(s) 142
BveI ACCTGC 1 cut(s) 418
Cac8I GCNNGC 2 cut(s) 158, 425
CfoI GCGC 3 cut(s) 102, 229, 493
Cfr13I GGNCC 1 cut(s) 124
CseI GACGC 1 cut(s) 37
CviAII CATG 4 cut(s) 74, 483, 521, 528
CviJI RGCY 8 cut(s) 18, 125, 133, 203, 256, 271, 393, 410
CviKI_1 RGCY 8 cut(s) 18, 125, 133, 203, 256, 271, 393, 410
DdeI CTNAG 2 cut(s) 134, 298
DpnI GATC 3 cut(s) 82, 214, 557
DpnII GATC 3 cut(s) 80, 212, 555
DraI TTTAAA 1 cut(s) 93
EciI GGCGGA 1 cut(s) 40
Ecl136II GAGCTC 1 cut(s) 133
Eco24I GRGCYC 1 cut(s) 135
Eco47III AGCGCT 1 cut(s) 492
Eco53kI GAGCTC 1 cut(s) 133
Eco88I CYCGRG 1 cut(s) 128
EcoICRI GAGCTC 1 cut(s) 133
EcoO109I RGGNCCY 1 cut(s) 124
EcoRII CCWGG 1 cut(s) 260
EcoT38I GRGCYC 1 cut(s) 135
Esp3I CGTCTC 1 cut(s) 506
FaeI CATG 4 cut(s) 77, 486, 524, 531
FatI CATG 4 cut(s) 73, 482, 520, 527
FauI CCCGC 1 cut(s) 149
FokI GGATG 2 cut(s) 53, 232
FriOI GRGCYC 1 cut(s) 135
FspBI CTAG 1 cut(s) 465
GlaI GCGC 3 cut(s) 101, 228, 492
HaeII RGCGCY 1 cut(s) 494
HaeIII GGCC 2 cut(s) 18, 125
HgaI GACGC 1 cut(s) 37
HhaI GCGC 3 cut(s) 102, 229, 493
Hin1I GRCGYC 1 cut(s) 499
Hin1II CATG 4 cut(s) 77, 486, 524, 531
Hin6I GCGC 3 cut(s) 100, 227, 491
HinP1I GCGC 3 cut(s) 100, 227, 491
HinfI GANTC 2 cut(s) 64, 296
HphI GGTGA 2 cut(s) 250, 442
Hpy188I TCNGA 4 cut(s) 295, 301, 414, 497
Hpy188III TCNNGA 3 cut(s) 34, 317, 338
Hpy99I CGWCG 2 cut(s) 252, 501
HpyAV CCTTC 6 cut(s) 31, 115, 191, 296, 346, 413
HpyCH4IV ACGT 2 cut(s) 247, 499
HpyCH4V TGCA 2 cut(s) 73, 527
HpyF3I CTNAG 2 cut(s) 134, 298
HpySE526I ACGT 2 cut(s) 247, 499
Hsp92I GRCGYC 1 cut(s) 499
Hsp92II CATG 4 cut(s) 77, 486, 524, 531
HspAI GCGC 3 cut(s) 100, 227, 491
Kzo9I GATC 3 cut(s) 80, 212, 555
LmnI GCTCC 3 cut(s) 268, 331, 498
LpnPI CCDG 8 cut(s) 129, 247, 274, 296, 323, 375, 413, 426
LweI GCATC 2 cut(s) 343, 370
MaeI CTAG 1 cut(s) 465
MaeII ACGT 2 cut(s) 247, 499
MaeIII GTNAC 1 cut(s) 139
MalI GATC 3 cut(s) 82, 214, 557
MboI GATC 3 cut(s) 80, 212, 555
MboII GAAGA 4 cut(s) 179, 231, 332, 361
MfeI CAATTG 1 cut(s) 68
MflI RGATCY 1 cut(s) 555
MhlI GDGCHC 1 cut(s) 135
MluCI AATT 3 cut(s) 68, 107, 375
MlyI GAGTC 2 cut(s) 73, 290
MmeI TCCRAC 1 cut(s) 520
MnlI CCTC 6 cut(s) 259, 319, 465, 528, 562, 575
MroXI GAANNNNTTC 1 cut(s) 306
MseI TTAA 3 cut(s) 92, 287, 561
MslI CAYNNNNRTG 1 cut(s) 401
MspR9I CCNGG 1 cut(s) 262
MunI CAATTG 1 cut(s) 68
MvaI CCWGG 1 cut(s) 262
MvnI CGCG 2 cut(s) 100, 156
NdeII GATC 3 cut(s) 80, 212, 555
NlaIII CATG 4 cut(s) 77, 486, 524, 531
NlaIV GGNNCC 2 cut(s) 126, 270
NmuCI GTSAC 1 cut(s) 139
NspV TTCGAA 2 cut(s) 242, 458
PaqCI CACCTGC 1 cut(s) 418
PdmI GAANNNNTTC 1 cut(s) 306
PleI GAGTC 2 cut(s) 72, 290
PpsI GAGTC 2 cut(s) 72, 290
Psp124BI GAGCTC 1 cut(s) 135
Psp6I CCWGG 1 cut(s) 260
PspGI CCWGG 1 cut(s) 260
PspN4I GGNNCC 2 cut(s) 126, 270
PspPI GGNCC 1 cut(s) 124
PsuI RGATCY 1 cut(s) 555
RseI CAYNNNNRTG 1 cut(s) 401
SacI GAGCTC 1 cut(s) 135
SaqAI TTAA 3 cut(s) 92, 287, 561
Sau3AI GATC 3 cut(s) 80, 212, 555
Sau96I GGNCC 1 cut(s) 124
SchI GAGTC 2 cut(s) 73, 290
ScrFI CCNGG 1 cut(s) 262
SduI GDGCHC 1 cut(s) 135
SetI ASST 9 cut(s) 135, 250, 258, 263, 307, 412, 432, 476, 502
SfaNI GCATC 2 cut(s) 343, 370
SfuI TTCGAA 2 cut(s) 242, 458
SmiMI CAYNNNNRTG 1 cut(s) 401
SpeI ACTAGT 1 cut(s) 464
Sse9I AATT 3 cut(s) 68, 107, 375
SsiI CCGC 3 cut(s) 25, 98, 156
SspMI CTAG 1 cut(s) 465
SstI GAGCTC 1 cut(s) 135
StyD4I CCNGG 1 cut(s) 260
TaiI ACGT 2 cut(s) 250, 502
TaqI TCGA 3 cut(s) 35, 242, 458
TasI AATT 3 cut(s) 68, 107, 375
Tru1I TTAA 3 cut(s) 92, 287, 561
Tru9I TTAA 3 cut(s) 92, 287, 561
TscAI CASTG 1 cut(s) 142
TseFI GTSAC 1 cut(s) 139
Tsp45I GTSAC 1 cut(s) 139
TspDTI ATGAA 6 cut(s) 180, 290, 294, 377, 385, 471
TspRI CASTG 1 cut(s) 142
XmnI GAANNNNTTC 1 cut(s) 306
XspI CTAG 1 cut(s) 465
ZraI GACGTC 1 cut(s) 500
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.