Rh3BG206400

Component of the DNA topoisomerase VI involved in chromatin organization and progression of endoreduplication cycles. Relaxes both positive and negative superturns and exhibits a strong decatenase activity. The B subunit binds ATP

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3B
Physical Location & Seq
Forward (+)
18532757 .. 18542174
9418 bp
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UTR
Exon/CDS
Intron
Rh3BG206400.1

Sequence Viewer

Length: 507 bp
ATGAGGGCAGATTTGGTGGTTTGTGGTGTTGAATTGCAGGTCAGCTTTCTGAATATTAATGGTTTCGGTTTGAAGAGCAGTAAGAAACCCAAATCAAAGACTCCGGCAAAGAAGCCCAAAGACAGTGTTCTTGAGCAGAAATCTCCAGCTGAGTTCTTCGCTGAGAACAAGAACATTGCTGGATTTGGTAATCCAGGGAAATGTCTTTATACTAATGTGAGGGAACTTGTGGAGAACTCATTTGATTCGACGGAGTCCATATCGGAGCTTCCTCTGATAGAAATCACAATCGGTGTGGGAAGTTTAAGGTCGTTCTGTGCCTTGTGGGCTATTAATCTATTAGTAAAGCAAATGGAGAAGCATATCAAGACACTCATTGTCCTATCTCACTACTTGGAGATGCAGTCTTTTTCCTCTCCATTGTCTACCATACTAAGCAAGCTCAAGAGTCAAGACTCCACAACTCCCAAAAGCCCTTCACAGTGGGCCAGATGGAAGAATGATTGA

Protein Analysis

168

Amino Acids

18.68

Weight (kDa)

9.26

Isoelectric Point (pI)

58.12

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 28
AccI GTMKAC 1 cut(s) 425
AgsI TTSAA 2 cut(s) 32, 73
AjnI CCWGG 1 cut(s) 193
AluBI AGCT 4 cut(s) 45, 149, 268, 442
AluI AGCT 4 cut(s) 45, 149, 268, 442
AoxI GGCC 1 cut(s) 486
AseI ATTAAT 2 cut(s) 57, 333
AspS9I GGNCC 1 cut(s) 486
BccI CCATC 1 cut(s) 486
BciT130I CCWGG 1 cut(s) 195
BfuAI ACCTGC 1 cut(s) 28
BglI GCCNNNNNGGC 1 cut(s) 326
Bme1390I CCNGG 1 cut(s) 195
BmgT120I GGNCC 1 cut(s) 486
BmrFI CCNGG 1 cut(s) 195
BmsI GCATC 1 cut(s) 390
BpmI CTGGAG 1 cut(s) 129
BpuEI CTTGAG 2 cut(s) 152, 428
BsaBI GATNNNNATC 1 cut(s) 281
BsaJI CCNNGG 1 cut(s) 194
BsaXI ACNNNNNCTCC 2 cut(s) 389, 419
Bse3DI GCAATG 1 cut(s) 174
Bse8I GATNNNNATC 1 cut(s) 281
BseBI CCWGG 1 cut(s) 195
BseDI CCNNGG 1 cut(s) 194
BseJI GATNNNNATC 1 cut(s) 281
BseMI GCAATG 1 cut(s) 174
BseMII CTCAG 2 cut(s) 141, 153
BshFI GGCC 1 cut(s) 488
BsiSI CCGG 1 cut(s) 104
BsnI GGCC 1 cut(s) 488
BspANI GGCC 1 cut(s) 488
BspCNI CTCAG 2 cut(s) 142, 154
BspMI ACCTGC 1 cut(s) 28
BspQI GCTCTTC 1 cut(s) 68
BsrDI GCAATG 1 cut(s) 174
BssECI CCNNGG 1 cut(s) 194
Bst2UI CCWGG 1 cut(s) 195
Bst4CI ACNGT 2 cut(s) 125, 483
Bst6I CTCTTC 1 cut(s) 68
BstC8I GCNNGC 1 cut(s) 440
BstDEI CTNAG 3 cut(s) 150, 162, 434
BstMWI GCNNNNNNNGC 1 cut(s) 326
BstNI CCWGG 1 cut(s) 195
BstSCI CCNGG 1 cut(s) 193
BsuRI GGCC 1 cut(s) 488
BtsIMutI CAGTG 2 cut(s) 130, 488
BveI ACCTGC 1 cut(s) 28
Cac8I GCNNGC 1 cut(s) 440
Cfr13I GGNCC 1 cut(s) 486
CspCI CAANNNNNGTGG 2 cut(s) 276, 311
CviJI RGCY 8 cut(s) 45, 115, 149, 268, 329, 442, 474, 488
CviKI_1 RGCY 8 cut(s) 45, 115, 149, 268, 329, 442, 474, 488
DdeI CTNAG 3 cut(s) 150, 162, 434
Eam1104I CTCTTC 1 cut(s) 68
EarI CTCTTC 1 cut(s) 68
EcoRII CCWGG 1 cut(s) 193
FaiI YATR 4 cut(s) 210, 260, 363, 431
FblI GTMKAC 1 cut(s) 425
GsuI CTGGAG 1 cut(s) 129
HaeIII GGCC 1 cut(s) 488
HapII CCGG 1 cut(s) 104
HinfI GANTC 5 cut(s) 100, 245, 254, 448, 455
HpaII CCGG 1 cut(s) 104
Hpy166II GTNNAC 1 cut(s) 426
Hpy188I TCNGA 3 cut(s) 51, 265, 276
Hpy188III TCNNGA 4 cut(s) 131, 367, 445, 452
Hpy8I GTNNAC 1 cut(s) 426
Hpy99I CGWCG 1 cut(s) 253
HpyAV CCTTC 1 cut(s) 486
HpyCH4III ACNGT 2 cut(s) 125, 483
HpyCH4V TGCA 2 cut(s) 37, 403
HpyF10VI GCNNNNNNNGC 1 cut(s) 326
HpyF3I CTNAG 3 cut(s) 150, 162, 434
LguI GCTCTTC 1 cut(s) 68
LmnI GCTCC 1 cut(s) 265
LpnPI CCDG 7 cut(s) 23, 117, 159, 165, 180, 207, 502
LweI GCATC 1 cut(s) 390
MboII GAAGA 2 cut(s) 85, 148
MluCI AATT 1 cut(s) 32
MlyI GAGTC 4 cut(s) 94, 263, 449, 457
MnlI CCTC 3 cut(s) 213, 282, 424
MseI TTAA 3 cut(s) 57, 305, 333
MspA1I CMGCKG 1 cut(s) 149
MspI CCGG 1 cut(s) 104
MspR9I CCNGG 1 cut(s) 195
MvaI CCWGG 1 cut(s) 195
MwoI GCNNNNNNNGC 1 cut(s) 326
PciSI GCTCTTC 1 cut(s) 68
PfeI GAWTC 1 cut(s) 245
PflFI GACNNNGTC 1 cut(s) 253
PleI GAGTC 4 cut(s) 94, 262, 449, 456
PpsI GAGTC 4 cut(s) 94, 262, 449, 456
PshBI ATTAAT 2 cut(s) 57, 333
Psp6I CCWGG 1 cut(s) 193
PspGI CCWGG 1 cut(s) 193
PspPI GGNCC 1 cut(s) 486
PsyI GACNNNGTC 1 cut(s) 253
PvuII CAGCTG 1 cut(s) 149
SapI GCTCTTC 1 cut(s) 68
SaqAI TTAA 3 cut(s) 57, 305, 333
Sau96I GGNCC 1 cut(s) 486
SchI GAGTC 4 cut(s) 94, 263, 449, 457
ScrFI CCNGG 1 cut(s) 195
SetI ASST 6 cut(s) 42, 47, 151, 270, 311, 444
SfaNI GCATC 1 cut(s) 390
SmlI CTYRAG 2 cut(s) 131, 443
SmoI CTYRAG 2 cut(s) 131, 443
Sse9I AATT 1 cut(s) 32
SspI AATATT 1 cut(s) 55
StyD4I CCNGG 1 cut(s) 193
TaaI ACNGT 2 cut(s) 125, 483
TaqI TCGA 1 cut(s) 248
TasI AATT 1 cut(s) 32
TfiI GAWTC 1 cut(s) 245
Tru1I TTAA 3 cut(s) 57, 305, 333
Tru9I TTAA 3 cut(s) 57, 305, 333
TscAI CASTG 2 cut(s) 130, 488
TspGWI ACGGA 1 cut(s) 266
TspRI CASTG 2 cut(s) 130, 488
Tth111I GACNNNGTC 1 cut(s) 253
VspI ATTAAT 2 cut(s) 57, 333
XmiI GTMKAC 1 cut(s) 425
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.