Rh3CG203500

Component of the DNA topoisomerase VI involved in chromatin organization and progression of endoreduplication cycles. Relaxes both positive and negative superturns and exhibits a strong decatenase activity. The B subunit binds ATP

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3C
Physical Location & Seq
Forward (+)
18475617 .. 18477704
2088 bp
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UTR
Exon/CDS
Intron
Rh3CG203500.1

Sequence Viewer

Length: 324 bp
ATGAGGGCAGATTTGGTGGTTTGTGGTGTTGAATTGCAGGTCAGCTTTCTGAATATTAATGGTTTCGGTTTGAAGAGCAGTAAGAAACCCAAATCAAAGACTCCGGCAAAGAAGCCCAAAGACAGTGTTCTTGAGCAGAAATCTCCAGCTGAGTTCTTCGCTGAGAACAAGAACATTGCTGGATTTGGTAATCAAATGGAGAAGCATATCAAGACACTCATTGTCCTATCTCACTACTTGGAGATGCAGTCTTTTTCCTCTCCATTGTCTACCATACTAAGCAAGCTCAAGAGTCAAGACTCCACAACTCCCAAAAGGTTATAA

Protein Analysis

107

Amino Acids

11.87

Weight (kDa)

9.79

Isoelectric Point (pI)

53.77

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 322
Acc36I ACCTGC 1 cut(s) 28
AccI GTMKAC 1 cut(s) 269
AgsI TTSAA 2 cut(s) 32, 73
AluBI AGCT 3 cut(s) 45, 149, 286
AluI AGCT 3 cut(s) 45, 149, 286
AseI ATTAAT 1 cut(s) 57
BfuAI ACCTGC 1 cut(s) 28
BmsI GCATC 1 cut(s) 234
BpmI CTGGAG 1 cut(s) 129
BpuEI CTTGAG 2 cut(s) 152, 272
BsaXI ACNNNNNCTCC 2 cut(s) 233, 263
Bse3DI GCAATG 1 cut(s) 174
BseMI GCAATG 1 cut(s) 174
BseMII CTCAG 2 cut(s) 141, 153
BsiSI CCGG 1 cut(s) 104
BspCNI CTCAG 2 cut(s) 142, 154
BspMI ACCTGC 1 cut(s) 28
BspQI GCTCTTC 1 cut(s) 68
BsrDI GCAATG 1 cut(s) 174
Bst4CI ACNGT 1 cut(s) 125
Bst6I CTCTTC 1 cut(s) 68
BstC8I GCNNGC 1 cut(s) 284
BstDEI CTNAG 3 cut(s) 150, 162, 278
BtsIMutI CAGTG 1 cut(s) 130
BveI ACCTGC 1 cut(s) 28
Cac8I GCNNGC 1 cut(s) 284
CviJI RGCY 4 cut(s) 45, 115, 149, 286
CviKI_1 RGCY 4 cut(s) 45, 115, 149, 286
DdeI CTNAG 3 cut(s) 150, 162, 278
Eam1104I CTCTTC 1 cut(s) 68
EarI CTCTTC 1 cut(s) 68
FaiI YATR 3 cut(s) 207, 275, 322
FblI GTMKAC 1 cut(s) 269
GsuI CTGGAG 1 cut(s) 129
HapII CCGG 1 cut(s) 104
HinfI GANTC 3 cut(s) 100, 292, 299
HpaII CCGG 1 cut(s) 104
Hpy166II GTNNAC 1 cut(s) 270
Hpy188I TCNGA 1 cut(s) 51
Hpy188III TCNNGA 4 cut(s) 131, 211, 289, 296
Hpy8I GTNNAC 1 cut(s) 270
HpyCH4III ACNGT 1 cut(s) 125
HpyCH4V TGCA 2 cut(s) 37, 247
HpyF3I CTNAG 3 cut(s) 150, 162, 278
LguI GCTCTTC 1 cut(s) 68
LpnPI CCDG 4 cut(s) 23, 117, 159, 165
LweI GCATC 1 cut(s) 234
MboII GAAGA 2 cut(s) 85, 148
MluCI AATT 1 cut(s) 32
MlyI GAGTC 3 cut(s) 94, 293, 301
MnlI CCTC 1 cut(s) 268
MseI TTAA 1 cut(s) 57
MspA1I CMGCKG 1 cut(s) 149
MspI CCGG 1 cut(s) 104
PciSI GCTCTTC 1 cut(s) 68
PleI GAGTC 3 cut(s) 94, 293, 300
PpsI GAGTC 3 cut(s) 94, 293, 300
PshBI ATTAAT 1 cut(s) 57
PsiI TTATAA 1 cut(s) 322
PvuII CAGCTG 1 cut(s) 149
SapI GCTCTTC 1 cut(s) 68
SaqAI TTAA 1 cut(s) 57
SchI GAGTC 3 cut(s) 94, 293, 301
SetI ASST 5 cut(s) 42, 47, 151, 288, 320
SfaNI GCATC 1 cut(s) 234
SmlI CTYRAG 2 cut(s) 131, 287
SmoI CTYRAG 2 cut(s) 131, 287
Sse9I AATT 1 cut(s) 32
SspI AATATT 1 cut(s) 55
TaaI ACNGT 1 cut(s) 125
TasI AATT 1 cut(s) 32
Tru1I TTAA 1 cut(s) 57
Tru9I TTAA 1 cut(s) 57
TscAI CASTG 1 cut(s) 130
TspRI CASTG 1 cut(s) 130
VspI ATTAAT 1 cut(s) 57
XmiI GTMKAC 1 cut(s) 269
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.