Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3D

Orthogroup ID

OG0001411

Physical Location & Seq

Genomic Coordinates Reverse (-)

26645297 .. 26649942

Gene Structure 4646 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3DG266800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 222 bp

ATGAAATCTCCAGCTGGGTTCTTCGTTGAGAACAAGAACATTGCTGGATTTGGGAAATGTCTTTATACTACTATGAGGGAACTTGTGGAGAACTCATTTGATTCGACGGAGTCCATATCGGAGCTTCCTCTGATAGAAATCACAATGTTGTTCACGTCTGTGATGGCTTGTATTATTAGTTGGGAATTCTTCAACAAGGAAATAAAGGAGACATGCACCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000902 GO:0003674 GO:0003735 GO:0003824 GO:0003916 GO:0003918 GO:0005198 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006412 GO:0006518 GO:0006725 GO:0006807 GO:0007049 GO:0007275 GO:0007389 GO:0008094 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009330 GO:0009653 GO:0009719 GO:0009725 GO:0009741 GO:0009888 GO:0009987 GO:0010026 GO:0010033 GO:0010467 GO:0014070 GO:0015935 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016853 GO:0016887 GO:0017111 GO:0019538 GO:0022402 GO:0022613 GO:0030154 GO:0032501 GO:0032502 GO:0032989 GO:0032991 GO:0033993 GO:0034641 GO:0034645 GO:0042023 GO:0042221 GO:0042254 GO:0042623 GO:0042802 GO:0042803 GO:0043043 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043603 GO:0043604 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044446 GO:0044464 GO:0044786 GO:0046483 GO:0046983 GO:0048856 GO:0048869 GO:0050896 GO:0061505 GO:0071704 GO:0071840 GO:0090304 GO:0090558 GO:0140097 GO:1901360 GO:1901564 GO:1901566 GO:1901576 GO:1901700 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HATPase_c HATPase_c_3 Topo-VIb_trans

Protein Analysis

73

Amino Acids

8.31

Weight (kDa)

4.61

Isoelectric Point (pI)

67.5

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001411)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0372821 RchiOBHm_Chr2g0120391 RchiOBHm_Chr3g0472751 RchiOBHm_Chr5g0036011 RchiOBHm_Chr6g0269661 RchiOBHm_Chr7g0231021
rosa_laevigata	RLG00000000534 RLG00000003816
rosa_multiflora	Rmu_sc0000084.1_g000050 Rmu_sc0001493.1_g000009 Rmu_sc0001851.1_g000026 Rmu_sc0003198.1_g000001 Rmu_sc0003198.1_g000002 Rmu_sc0004226.1_g000003 Rmu_sc0005738.1_g000004 Rmu_sc0006380.1_g000004 Rmu_sc0012041.1_g000003 Rmu_sc0017397.1_g000001
rosa_roxburghii	Rroxscaffold_4G00313360
rosa_rugosa	Rorug03G0325800 Rorug04G0073800 Rorug06G0052600
rosa_samantha	Rh1CG021400 Rh2CG235800 Rh2DG107900 Rh3AG180200 Rh3BG065800 Rh3BG206400 Rh3CG064500 Rh3CG203500 Rh3CG221800 Rh3CG270900 Rh3DG065700 Rh3DG132500 Rh3DG266800 Rh4AG242700 Rh4BG140300 Rh4BG140400 Rh4CG033900 Rh5AG093800 Rh5BG377400 Rh5BG426700 Rh5DG440600 Rh6AG048200 Rh6AG074100 Rh6AG148600 Rh6AG196800 Rh6AG406100 Rh7AG362100 Rh7BG138700 Rh7CG380700 Rh7DG335500
rosa_wichuraiana	Rw3G013510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	1 cut(s)	185
AgsI	TTSAA	1 cut(s)	193
AjiI	CACGTC	1 cut(s)	156
AleI	CACNNNNGTG	1 cut(s)	158
AluBI	AGCT	2 cut(s)	14, 124
AluI	AGCT	2 cut(s)	14, 124
Alw26I	GTCTC	1 cut(s)	203
ApoI	RAATTY	1 cut(s)	185
BccI	CCATC	1 cut(s)	157
BcoDI	GTCTC	1 cut(s)	203
BfaI	CTAG	1 cut(s)	220
BmgBI	CACGTC	1 cut(s)	156
BsaBI	GATNNNNATC	1 cut(s)	137
Bse3DI	GCAATG	1 cut(s)	39
Bse8I	GATNNNNATC	1 cut(s)	137
BseJI	GATNNNNATC	1 cut(s)	137
BseMI	GCAATG	1 cut(s)	39
BseYI	CCCAGC	1 cut(s)	14
BsmAI	GTCTC	1 cut(s)	203
BsrDI	GCAATG	1 cut(s)	39
BstMAI	GTCTC	1 cut(s)	203
BstNSI	RCATGY	1 cut(s)	216
BtrI	CACGTC	1 cut(s)	156
CviAII	CATG	1 cut(s)	213
CviJI	RGCY	3 cut(s)	14, 124, 167
CviKI_1	RGCY	3 cut(s)	14, 124, 167
EcoRI	GAATTC	1 cut(s)	185
FaeI	CATG	1 cut(s)	216
FaiI	YATR	4 cut(s)	66, 74, 116, 214
FatI	CATG	1 cut(s)	212
FspBI	CTAG	1 cut(s)	220
GsaI	CCCAGC	1 cut(s)	18
Hin1II	CATG	1 cut(s)	216
HinfI	GANTC	2 cut(s)	101, 110
Hpy166II	GTNNAC	1 cut(s)	153
Hpy188I	TCNGA	2 cut(s)	121, 132
Hpy8I	GTNNAC	1 cut(s)	153
Hpy99I	CGWCG	1 cut(s)	109
HpyCH4IV	ACGT	1 cut(s)	155
HpyCH4V	TGCA	1 cut(s)	216
HpySE526I	ACGT	1 cut(s)	155
Hsp92II	CATG	1 cut(s)	216
LmnI	GCTCC	1 cut(s)	121
LpnPI	CCDG	2 cut(s)	24, 30
MaeI	CTAG	1 cut(s)	220
MaeII	ACGT	1 cut(s)	155
MboII	GAAGA	2 cut(s)	13, 181
MluCI	AATT	1 cut(s)	185
MlyI	GAGTC	1 cut(s)	119
MnlI	CCTC	2 cut(s)	69, 138
MslI	CAYNNNNRTG	1 cut(s)	158
MspA1I	CMGCKG	1 cut(s)	14
NlaIII	CATG	1 cut(s)	216
NspI	RCATGY	1 cut(s)	216
OliI	CACNNNNGTG	1 cut(s)	158
PfeI	GAWTC	1 cut(s)	101
PflFI	GACNNNGTC	1 cut(s)	109
PleI	GAGTC	1 cut(s)	118
PpsI	GAGTC	1 cut(s)	118
PspFI	CCCAGC	1 cut(s)	14
PsyI	GACNNNGTC	1 cut(s)	109
PvuII	CAGCTG	1 cut(s)	14
RseI	CAYNNNNRTG	1 cut(s)	158
SchI	GAGTC	1 cut(s)	119
SetI	ASST	4 cut(s)	16, 126, 158, 221
SgeI	CNNG	8 cut(s)	23, 27, 46, 57, 95, 166, 180, 208
SmiMI	CAYNNNNRTG	1 cut(s)	158
Sse9I	AATT	1 cut(s)	185
SspMI	CTAG	1 cut(s)	220
TaiI	ACGT	1 cut(s)	158
TaqI	TCGA	1 cut(s)	104
TasI	AATT	1 cut(s)	185
TfiI	GAWTC	1 cut(s)	101
TspDTI	ATGAA	1 cut(s)	17
TspGWI	ACGGA	1 cut(s)	122
Tth111I	GACNNNGTC	1 cut(s)	109
XapI	RAATTY	1 cut(s)	185
XceI	RCATGY	1 cut(s)	216
XspI	CTAG	1 cut(s)	220

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.