Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3D

Orthogroup ID

OG0001411

Physical Location & Seq

Genomic Coordinates Forward (+)

4370372 .. 4387404

Gene Structure 17033 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3DG065700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 972 bp

ATGTTGTCCATCCCTAACATCAGTGGCACAGTCACAGGGAATACTAGTAAAAAGATAAGAGGGACTGTGGTATTGATGAAGAAGAATGCTTTGGACTTCAATGATTTGATTGCTTCAGTTGCTGATGGCGCGCTTGAGTTGTTAGGCCAAGGGGTTTCTTTCAAGCTCATTAGTGCTGTTAATGCTGAATCTGGTCAAAGAACTTTATGTAATATGCAAGAAATCAAGGGAAAACACCTTGGTTGGCTAACTACGTCATATCTTCCAAGTGATACACCATTGCCACTACAAAGTTTCAGAGAAGACGAACTGGTAAACTTAAGAGGAGATGGGGAAGGAGAGCTCAAGGAATGGGACAGGATTTATGACTATGCTTACTACAAAGATCTCGGGAATCCAGATGAGGGCGAAGAATATGTCCGTCCTATTCTTGGAGGATCTAGAGAGTACATACCCTTTACCCTCGAAGAGGAAGAACTGGACGAGCACCGACAGAGACAGAGCGAGAATAGGTTGATCCTTCTTCTGAGCCTAAACATTTATGTTCCGAGAGATGAACGATTTGGCCACATGAAGTTGGCAGACTTTCTTACTTATGGTTTTAAATCCATAGCTCAGTTCGTTAGAAAAGAGCTTGAGGCTTTGTTTGATGATACTCCCAACGAGTTTGACAGCTTCGAAGATGTGCTTAAACTTTATGATCGAAGGAGGGATTCCTTTGCCTCAAGTTCAAAATGGTTGATAGCAACGCATCATCTGCAAAGGTGTGAAAAGGAAACTGTTCTATTCCCTATACTCACTACTGTTCCCATCCTTGGAGAATGTCCTAAGACGTACTGGGGAACTATAGTTGCAGAGGTTGGTTTTGGTTTGGAGTTCATTTGGTTGCCCGTGCTTTCATTTTGTGTTGGGACAAAGAGGTATATATTGGGGAGTGGCTGCGACACTATCACCAATTTCAGTTCTGGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0008150 GO:0008152 GO:0016165 GO:0016491 GO:0016701 GO:0016702 GO:0044424 GO:0044464 GO:0051213 GO:0055114

KEGG Pathways

Metabolic & Signaling

ko00591 ko00592 ko01100 ko01110 map00591 map00592 map01100 map01110

Pfam Domains

Protein Families

Lipoxygenase PLAT

Protein Analysis

323

Amino Acids

36.61

Weight (kDa)

4.98

Isoelectric Point (pI)

36.49

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Lipoxygenase	PF00305	96 - 241	4e-38	Lipoxygenase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001411)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0372821 RchiOBHm_Chr2g0120391 RchiOBHm_Chr3g0472751 RchiOBHm_Chr5g0036011 RchiOBHm_Chr6g0269661 RchiOBHm_Chr7g0231021
rosa_laevigata	RLG00000000534 RLG00000003816
rosa_multiflora	Rmu_sc0000084.1_g000050 Rmu_sc0001493.1_g000009 Rmu_sc0001851.1_g000026 Rmu_sc0003198.1_g000001 Rmu_sc0003198.1_g000002 Rmu_sc0004226.1_g000003 Rmu_sc0005738.1_g000004 Rmu_sc0006380.1_g000004 Rmu_sc0012041.1_g000003 Rmu_sc0017397.1_g000001
rosa_roxburghii	Rroxscaffold_4G00313360
rosa_rugosa	Rorug03G0325800 Rorug04G0073800 Rorug06G0052600
rosa_samantha	Rh1CG021400 Rh2CG235800 Rh2DG107900 Rh3AG180200 Rh3BG065800 Rh3BG206400 Rh3CG064500 Rh3CG203500 Rh3CG221800 Rh3CG270900 Rh3DG065700 Rh3DG132500 Rh3DG266800 Rh4AG242700 Rh4BG140300 Rh4BG140400 Rh4CG033900 Rh5AG093800 Rh5BG377400 Rh5BG426700 Rh5DG440600 Rh6AG048200 Rh6AG074100 Rh6AG148600 Rh6AG196800 Rh6AG406100 Rh7AG362100 Rh7BG138700 Rh7CG380700 Rh7DG335500
rosa_wichuraiana	Rw3G013510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	131
AclWI	GGATC	2 cut(s)	445, 511
AcoI	YGGCCR	1 cut(s)	565
AcuI	CTGAAG	1 cut(s)	99
AfaI	GTAC	2 cut(s)	449, 836
AfiI	CCNNNNNNNGG	4 cut(s)	404, 431, 469, 815
AflII	CTTAAG	1 cut(s)	319
AgsI	TTSAA	3 cut(s)	100, 163, 732
AhlI	ACTAGT	1 cut(s)	44
AjuI	GAANNNNNNNTTGG	2 cut(s)	74, 106
AluBI	AGCT	5 cut(s)	166, 343, 614, 634, 675
AluI	AGCT	5 cut(s)	166, 343, 614, 634, 675
Alw21I	GWGCWC	2 cut(s)	345, 489
Alw26I	GTCTC	1 cut(s)	490
AlwI	GGATC	2 cut(s)	445, 511
AlwNI	CAGNNNCTG	1 cut(s)	122
Ama87I	CYCGRG	1 cut(s)	389
AoxI	GGCC	2 cut(s)	145, 565
ApeKI	GCWGC	1 cut(s)	939
ArsI	GACNNNNNNTTYG	2 cut(s)	402, 434
Asp700I	GAANNNNTTC	1 cut(s)	780
AspLEI	GCGC	2 cut(s)	131, 133
AsuHPI	GGTGA	1 cut(s)	943
AsuII	TTCGAA	1 cut(s)	678
AvaI	CYCGRG	1 cut(s)	389
BalI	TGGCCA	1 cut(s)	567
BanII	GRGCYC	1 cut(s)	345
BbsI	GAAGAC	1 cut(s)	309
Bbv12I	GWGCWC	2 cut(s)	345, 489
BbvI	GCAGC	1 cut(s)	926
BccI	CCATC	4 cut(s)	17, 119, 323, 818
BcoDI	GTCTC	1 cut(s)	490
BcuI	ACTAGT	1 cut(s)	44
BfaI	CTAG	2 cut(s)	45, 441
BfmI	CTRYAG	1 cut(s)	846
BfrI	CTTAAG	1 cut(s)	319
BglII	AGATCT	1 cut(s)	385
BisI	GCNGC	1 cut(s)	940
BlsI	GCNGC	1 cut(s)	941
BmeT110I	CYCGRG	1 cut(s)	389
BmrI	ACTGGG	1 cut(s)	847
BmsI	GCATC	1 cut(s)	760
BmuI	ACTGGG	1 cut(s)	847
BpiI	GAAGAC	1 cut(s)	309
Bpu14I	TTCGAA	1 cut(s)	678
BpuEI	CTTGAG	4 cut(s)	155, 329, 656, 709
BsaJI	CCNNGG	3 cut(s)	148, 238, 814
Bsc4I	CCNNNNNNNGG	4 cut(s)	404, 431, 469, 815
Bse1I	ACTGG	3 cut(s)	315, 483, 842
Bse3DI	GCAATG	1 cut(s)	278
BseDI	CCNNGG	3 cut(s)	148, 238, 814
BseGI	GGATG	2 cut(s)	9, 810
BseLI	CCNNNNNNNGG	4 cut(s)	404, 431, 469, 815
BseMI	GCAATG	1 cut(s)	278
BseMII	CTCAG	2 cut(s)	518, 629
BseNI	ACTGG	3 cut(s)	315, 483, 842
BsePI	GCGCGC	1 cut(s)	129
BseRI	GAGGAG	1 cut(s)	339
BseXI	GCAGC	1 cut(s)	926
Bsh1236I	CGCG	1 cut(s)	131
BshFI	GGCC	2 cut(s)	147, 567
BsiHKAI	GWGCWC	2 cut(s)	345, 489
BsiHKCI	CYCGRG	1 cut(s)	389
BslFI	GGGAC	3 cut(s)	76, 368, 925
BslI	CCNNNNNNNGG	4 cut(s)	404, 431, 469, 815
BsmAI	GTCTC	1 cut(s)	490
BsmFI	GGGAC	3 cut(s)	76, 368, 925
BsmI	GAATGC	1 cut(s)	91
BsnI	GGCC	2 cut(s)	147, 567
BsoBI	CYCGRG	1 cut(s)	389
Bsp119I	TTCGAA	1 cut(s)	678
Bsp1286I	GDGCHC	2 cut(s)	345, 489
Bsp143I	GATC	4 cut(s)	385, 437, 516, 700
BspANI	GGCC	2 cut(s)	147, 567
BspCNI	CTCAG	2 cut(s)	519, 628
BspFNI	CGCG	1 cut(s)	131
BspPI	GGATC	2 cut(s)	445, 511
BspT104I	TTCGAA	1 cut(s)	678
BspTI	CTTAAG	1 cut(s)	319
BsrDI	GCAATG	1 cut(s)	278
BsrI	ACTGG	3 cut(s)	315, 483, 842
BssECI	CCNNGG	3 cut(s)	148, 238, 814
BssHII	GCGCGC	1 cut(s)	129
BssMI	GATC	4 cut(s)	385, 437, 516, 700
BssT1I	CCWWGG	3 cut(s)	148, 238, 814
Bst4CI	ACNGT	4 cut(s)	31, 67, 781, 805
Bst6I	CTCTTC	1 cut(s)	462
BstAFI	CTTAAG	1 cut(s)	319
BstAPI	GCANNNNNTGC	1 cut(s)	757
BstBI	TTCGAA	1 cut(s)	678
BstC8I	GCNNGC	1 cut(s)	131
BstDEI	CTNAG	3 cut(s)	527, 615, 828
BstENI	CCTNNNNNAGG	1 cut(s)	467
BstF5I	GGATG	2 cut(s)	9, 810
BstFNI	CGCG	1 cut(s)	131
BstHHI	GCGC	2 cut(s)	131, 133
BstKTI	GATC	4 cut(s)	388, 440, 519, 703
BstMAI	GTCTC	1 cut(s)	490
BstMBI	GATC	4 cut(s)	385, 437, 516, 700
BstMWI	GCNNNNNNNGC	4 cut(s)	119, 128, 182, 757
BstSFI	CTRYAG	1 cut(s)	846
BstUI	CGCG	1 cut(s)	131
BstV1I	GCAGC	1 cut(s)	926
BstV2I	GAAGAC	1 cut(s)	309
BstX2I	RGATCY	2 cut(s)	385, 437
BstYI	RGATCY	2 cut(s)	385, 437
BsuRI	GGCC	2 cut(s)	147, 567
BtsCI	GGATG	2 cut(s)	9, 810
BtsIMutI	CAGTG	1 cut(s)	28
Cac8I	GCNNGC	1 cut(s)	131
CaiI	CAGNNNCTG	1 cut(s)	122
CfoI	GCGC	2 cut(s)	131, 133
Csp6I	GTAC	2 cut(s)	448, 835
CviAII	CATG	1 cut(s)	571
CviQI	GTAC	2 cut(s)	448, 835
DdeI	CTNAG	3 cut(s)	527, 615, 828
DpnI	GATC	4 cut(s)	387, 439, 518, 702
DpnII	GATC	4 cut(s)	385, 437, 516, 700
DraI	TTTAAA	1 cut(s)	604
EaeI	YGGCCR	1 cut(s)	565
Eam1104I	CTCTTC	1 cut(s)	462
EarI	CTCTTC	1 cut(s)	462
Ecl136II	GAGCTC	1 cut(s)	343
Eco130I	CCWWGG	3 cut(s)	148, 238, 814
Eco24I	GRGCYC	1 cut(s)	345
Eco53kI	GAGCTC	1 cut(s)	343
Eco57I	CTGAAG	1 cut(s)	99
Eco88I	CYCGRG	1 cut(s)	389
EcoICRI	GAGCTC	1 cut(s)	343
EcoNI	CCTNNNNNAGG	1 cut(s)	467
EcoT14I	CCWWGG	3 cut(s)	148, 238, 814
EcoT38I	GRGCYC	1 cut(s)	345
ErhI	CCWWGG	3 cut(s)	148, 238, 814
FaeI	CATG	1 cut(s)	574
FalI	AAGNNNNNCTT	2 cut(s)	672, 704
FaqI	GGGAC	3 cut(s)	76, 368, 925
FatI	CATG	1 cut(s)	570
Fnu4HI	GCNGC	1 cut(s)	940
FokI	GGATG	1 cut(s)	797
FriOI	GRGCYC	1 cut(s)	345
Fsp4HI	GCNGC	1 cut(s)	940
FspBI	CTAG	2 cut(s)	45, 441
GlaI	GCGC	2 cut(s)	130, 132
GluI	GCNGC	1 cut(s)	940
HaeIII	GGCC	2 cut(s)	147, 567
HhaI	GCGC	2 cut(s)	131, 133
Hin1II	CATG	1 cut(s)	574
Hin6I	GCGC	2 cut(s)	129, 131
HinP1I	GCGC	2 cut(s)	129, 131
HinfI	GANTC	3 cut(s)	188, 394, 713
HphI	GGTGA	1 cut(s)	943
Hpy166II	GTNNAC	1 cut(s)	316
Hpy188I	TCNGA	3 cut(s)	299, 528, 549
Hpy188III	TCNNGA	4 cut(s)	391, 398, 441, 966
Hpy8I	GTNNAC	1 cut(s)	316
HpyAV	CCTTC	3 cut(s)	329, 530, 699
HpyCH4III	ACNGT	4 cut(s)	31, 67, 781, 805
HpyCH4IV	ACGT	2 cut(s)	254, 833
HpyCH4V	TGCA	3 cut(s)	217, 760, 854
HpyF10VI	GCNNNNNNNGC	4 cut(s)	119, 128, 182, 757
HpyF3I	CTNAG	3 cut(s)	527, 615, 828
HpySE526I	ACGT	2 cut(s)	254, 833
Hsp92II	CATG	1 cut(s)	574
HspAI	GCGC	2 cut(s)	129, 131
Kzo9I	GATC	4 cut(s)	385, 437, 516, 700
LpnPI	CCDG	8 cut(s)	21, 177, 296, 343, 411, 464, 823, 951
Lsp1109I	GCAGC	1 cut(s)	926
LweI	GCATC	1 cut(s)	760
MaeI	CTAG	2 cut(s)	45, 441
MaeII	ACGT	2 cut(s)	254, 833
MaeIII	GTNAC	1 cut(s)	31
MalI	GATC	4 cut(s)	387, 439, 518, 702
MboI	GATC	4 cut(s)	385, 437, 516, 700
MboII	GAAGA	9 cut(s)	91, 94, 254, 314, 422, 479, 485, 515, 692
MflI	RGATCY	2 cut(s)	385, 437
MhlI	GDGCHC	2 cut(s)	345, 489
MlsI	TGGCCA	1 cut(s)	567
MluCI	AATT	1 cut(s)	955
MluNI	TGGCCA	1 cut(s)	567
Mox20I	TGGCCA	1 cut(s)	567
MroXI	GAANNNNTTC	1 cut(s)	780
MscI	TGGCCA	1 cut(s)	567
MseI	TTAA	4 cut(s)	180, 320, 603, 690
Msp20I	TGGCCA	1 cut(s)	567
MspCI	CTTAAG	1 cut(s)	319
Mva1269I	GAATGC	1 cut(s)	91
MvnI	CGCG	1 cut(s)	131
MwoI	GCNNNNNNNGC	4 cut(s)	119, 128, 182, 757
NdeII	GATC	4 cut(s)	385, 437, 516, 700
NlaIII	CATG	1 cut(s)	574
NmuCI	GTSAC	1 cut(s)	31
NspV	TTCGAA	1 cut(s)	678
PauI	GCGCGC	1 cut(s)	129
PctI	GAATGC	1 cut(s)	91
PdmI	GAANNNNTTC	1 cut(s)	780
PfeI	GAWTC	3 cut(s)	188, 394, 713
PkrI	GCNGC	1 cut(s)	941
Psp124BI	GAGCTC	1 cut(s)	345
PstNI	CAGNNNCTG	1 cut(s)	122
PsuI	RGATCY	2 cut(s)	385, 437
PteI	GCGCGC	1 cut(s)	129
RsaI	GTAC	2 cut(s)	449, 836
RsaNI	GTAC	2 cut(s)	448, 835
SacI	GAGCTC	1 cut(s)	345
SaqAI	TTAA	4 cut(s)	180, 320, 603, 690
SatI	GCNGC	1 cut(s)	940
Sau3AI	GATC	4 cut(s)	385, 437, 516, 700
SduI	GDGCHC	2 cut(s)	345, 489
SfaNI	GCATC	1 cut(s)	760
SfcI	CTRYAG	1 cut(s)	846
SfuI	TTCGAA	1 cut(s)	678
SmlI	CTYRAG	5 cut(s)	134, 319, 344, 635, 724
SmoI	CTYRAG	5 cut(s)	134, 319, 344, 635, 724
SpeI	ACTAGT	1 cut(s)	44
Sse9I	AATT	1 cut(s)	955
SspMI	CTAG	2 cut(s)	45, 441
SstI	GAGCTC	1 cut(s)	345
StyI	CCWWGG	3 cut(s)	148, 238, 814
TaaI	ACNGT	4 cut(s)	31, 67, 781, 805
TaiI	ACGT	2 cut(s)	257, 836
TaqI	TCGA	3 cut(s)	465, 678, 703
TasI	AATT	1 cut(s)	955
TatI	WGTACW	1 cut(s)	447
TfiI	GAWTC	3 cut(s)	188, 394, 713
Tru1I	TTAA	4 cut(s)	180, 320, 603, 690
Tru9I	TTAA	4 cut(s)	180, 320, 603, 690
TscAI	CASTG	1 cut(s)	28
TseFI	GTSAC	1 cut(s)	31
TseI	GCWGC	1 cut(s)	939
Tsp45I	GTSAC	1 cut(s)	31
TspDTI	ATGAA	5 cut(s)	92, 570, 587, 868, 888
TspGWI	ACGGA	1 cut(s)	410
TspRI	CASTG	1 cut(s)	28
Vha464I	CTTAAG	1 cut(s)	319
XagI	CCTNNNNNAGG	1 cut(s)	467
XbaI	TCTAGA	1 cut(s)	440
XmnI	GAANNNNTTC	1 cut(s)	780
XspI	CTAG	2 cut(s)	45, 441

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.