Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0001411

Physical Location & Seq

Genomic Coordinates Reverse (-)

59814060 .. 59819095

Gene Structure 5036 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG377400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 426 bp

ATGAATGGAATAATGAAAATCATGGAAGTGAAAAAGCTGGCCAATCGGTCATCAAGGCCCAGATTTAGGACACTTTTGGCCAAGAAAGGGGCAGATTTGGTGGTTTGTGGTGTTGAATTGCAGGTCAGCTTTCTGAATATTAATGGTTTCGGTTTGAAGAGCAGTAAGAAACCCAAATCAAAGACTCCAGCAAAGAAGCCCAAAGACAGTGTTCTTGAGCAGAAATCTCCAGCTGAGTTCTTCGCTGAGAACAAGAACATTGCTGGATTTGGTAATCCAGGGAAATGTCTTTATACTACTGTGAGGGAACTTGTGGAGAACTCATTTGATTCGACGGAGTCCATATCGGAGCTTCCTCTGATAGAAATCACAATACACAGCAAGCCGCACGTCTCTCTTCGATCTGTTATCTCTTCGTGTCTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000902 GO:0003674 GO:0003735 GO:0003824 GO:0003916 GO:0003918 GO:0005198 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006412 GO:0006518 GO:0006725 GO:0006807 GO:0007049 GO:0007275 GO:0007389 GO:0008094 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009330 GO:0009653 GO:0009719 GO:0009725 GO:0009741 GO:0009888 GO:0009987 GO:0010026 GO:0010033 GO:0010467 GO:0014070 GO:0015935 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016853 GO:0016887 GO:0017111 GO:0019538 GO:0022402 GO:0022613 GO:0030154 GO:0032501 GO:0032502 GO:0032989 GO:0032991 GO:0033993 GO:0034641 GO:0034645 GO:0042023 GO:0042221 GO:0042254 GO:0042623 GO:0042802 GO:0042803 GO:0043043 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043603 GO:0043604 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044446 GO:0044464 GO:0044786 GO:0046483 GO:0046983 GO:0048856 GO:0048869 GO:0050896 GO:0061505 GO:0071704 GO:0071840 GO:0090304 GO:0090558 GO:0140097 GO:1901360 GO:1901564 GO:1901566 GO:1901576 GO:1901700 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HATPase_c HATPase_c_3 Topo-VIb_trans

Protein Analysis

141

Amino Acids

15.52

Weight (kDa)

9.74

Isoelectric Point (pI)

50.03

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001411)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0372821 RchiOBHm_Chr2g0120391 RchiOBHm_Chr3g0472751 RchiOBHm_Chr5g0036011 RchiOBHm_Chr6g0269661 RchiOBHm_Chr7g0231021
rosa_laevigata	RLG00000000534 RLG00000003816
rosa_multiflora	Rmu_sc0000084.1_g000050 Rmu_sc0001493.1_g000009 Rmu_sc0001851.1_g000026 Rmu_sc0003198.1_g000001 Rmu_sc0003198.1_g000002 Rmu_sc0004226.1_g000003 Rmu_sc0005738.1_g000004 Rmu_sc0006380.1_g000004 Rmu_sc0012041.1_g000003 Rmu_sc0017397.1_g000001
rosa_roxburghii	Rroxscaffold_4G00313360
rosa_rugosa	Rorug03G0325800 Rorug04G0073800 Rorug06G0052600
rosa_samantha	Rh1CG021400 Rh2CG235800 Rh2DG107900 Rh3AG180200 Rh3BG065800 Rh3BG206400 Rh3CG064500 Rh3CG203500 Rh3CG221800 Rh3CG270900 Rh3DG065700 Rh3DG132500 Rh3DG266800 Rh4AG242700 Rh4BG140300 Rh4BG140400 Rh4CG033900 Rh5AG093800 Rh5BG377400 Rh5BG426700 Rh5DG440600 Rh6AG048200 Rh6AG074100 Rh6AG148600 Rh6AG196800 Rh6AG406100 Rh7AG362100 Rh7BG138700 Rh7CG380700 Rh7DG335500
rosa_wichuraiana	Rw3G013510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	112
AciI	CCGC	1 cut(s)	386
AcoI	YGGCCR	2 cut(s)	39, 78
AfiI	CCNNNNNNNGG	2 cut(s)	66, 87
AgsI	TTSAA	2 cut(s)	116, 157
AjiI	CACGTC	1 cut(s)	391
AjnI	CCWGG	1 cut(s)	277
AluBI	AGCT	4 cut(s)	37, 129, 233, 352
AluI	AGCT	4 cut(s)	37, 129, 233, 352
Alw26I	GTCTC	1 cut(s)	397
AoxI	GGCC	3 cut(s)	39, 56, 78
AseI	ATTAAT	1 cut(s)	141
AspS9I	GGNCC	1 cut(s)	57
BalI	TGGCCA	2 cut(s)	41, 80
BciT130I	CCWGG	1 cut(s)	279
BcoDI	GTCTC	1 cut(s)	397
BfuAI	ACCTGC	1 cut(s)	112
BisI	GCNGC	1 cut(s)	386
BlsI	GCNGC	1 cut(s)	387
Bme1390I	CCNGG	1 cut(s)	279
BmgBI	CACGTC	1 cut(s)	391
BmgT120I	GGNCC	1 cut(s)	57
BmrFI	CCNGG	1 cut(s)	279
BpmI	CTGGAG	2 cut(s)	171, 213
BpuEI	CTTGAG	1 cut(s)	236
BsaBI	GATNNNNATC	1 cut(s)	365
BsaJI	CCNNGG	1 cut(s)	278
Bsc4I	CCNNNNNNNGG	2 cut(s)	66, 87
Bse3DI	GCAATG	1 cut(s)	258
Bse8I	GATNNNNATC	1 cut(s)	365
BseBI	CCWGG	1 cut(s)	279
BseDI	CCNNGG	1 cut(s)	278
BseJI	GATNNNNATC	1 cut(s)	365
BseLI	CCNNNNNNNGG	2 cut(s)	66, 87
BseMI	GCAATG	1 cut(s)	258
BseMII	CTCAG	2 cut(s)	225, 237
BshFI	GGCC	3 cut(s)	41, 58, 80
BslI	CCNNNNNNNGG	2 cut(s)	66, 87
BsmAI	GTCTC	1 cut(s)	397
BsmBI	CGTCTC	1 cut(s)	397
BsnI	GGCC	3 cut(s)	41, 58, 80
Bsp143I	GATC	1 cut(s)	401
BspACI	CCGC	1 cut(s)	386
BspANI	GGCC	3 cut(s)	41, 58, 80
BspCNI	CTCAG	2 cut(s)	226, 238
BspMI	ACCTGC	1 cut(s)	112
BspQI	GCTCTTC	1 cut(s)	152
BsrDI	GCAATG	1 cut(s)	258
BssECI	CCNNGG	1 cut(s)	278
BssMI	GATC	1 cut(s)	401
Bst2UI	CCWGG	1 cut(s)	279
Bst4CI	ACNGT	2 cut(s)	209, 301
Bst6I	CTCTTC	3 cut(s)	152, 402, 418
BstC8I	GCNNGC	2 cut(s)	39, 383
BstDEI	CTNAG	2 cut(s)	234, 246
BstKTI	GATC	1 cut(s)	404
BstMAI	GTCTC	1 cut(s)	397
BstMBI	GATC	1 cut(s)	401
BstNI	CCWGG	1 cut(s)	279
BstSCI	CCNGG	1 cut(s)	277
BsuRI	GGCC	3 cut(s)	41, 58, 80
BtrI	CACGTC	1 cut(s)	391
BtsIMutI	CAGTG	1 cut(s)	214
BveI	ACCTGC	1 cut(s)	112
Cac8I	GCNNGC	2 cut(s)	39, 383
Cfr13I	GGNCC	1 cut(s)	57
CviAII	CATG	1 cut(s)	22
CviJI	RGCY	9 cut(s)	37, 41, 58, 80, 129, 199, 233, 352, 385
CviKI_1	RGCY	9 cut(s)	37, 41, 58, 80, 129, 199, 233, 352, 385
DdeI	CTNAG	2 cut(s)	234, 246
DpnI	GATC	1 cut(s)	403
DpnII	GATC	1 cut(s)	401
EaeI	YGGCCR	2 cut(s)	39, 78
Eam1104I	CTCTTC	3 cut(s)	152, 402, 418
EarI	CTCTTC	3 cut(s)	152, 402, 418
EcoRII	CCWGG	1 cut(s)	277
Esp3I	CGTCTC	1 cut(s)	397
FaeI	CATG	1 cut(s)	25
FaiI	YATR	3 cut(s)	23, 294, 344
FatI	CATG	1 cut(s)	21
Fnu4HI	GCNGC	1 cut(s)	386
Fsp4HI	GCNGC	1 cut(s)	386
GluI	GCNGC	1 cut(s)	386
GsuI	CTGGAG	2 cut(s)	171, 213
HaeIII	GGCC	3 cut(s)	41, 58, 80
Hin1II	CATG	1 cut(s)	25
HinfI	GANTC	3 cut(s)	184, 329, 338
Hpy188I	TCNGA	4 cut(s)	135, 349, 360, 425
Hpy188III	TCNNGA	1 cut(s)	215
Hpy99I	CGWCG	1 cut(s)	337
HpyCH4III	ACNGT	2 cut(s)	209, 301
HpyCH4IV	ACGT	1 cut(s)	390
HpyCH4V	TGCA	1 cut(s)	121
HpyF3I	CTNAG	2 cut(s)	234, 246
HpySE526I	ACGT	1 cut(s)	390
Hsp92II	CATG	1 cut(s)	25
Kzo9I	GATC	1 cut(s)	401
LguI	GCTCTTC	1 cut(s)	152
LmnI	GCTCC	1 cut(s)	349
LpnPI	CCDG	8 cut(s)	23, 73, 107, 201, 243, 249, 264, 291
MaeII	ACGT	1 cut(s)	390
MalI	GATC	1 cut(s)	403
MboI	GATC	1 cut(s)	401
MboII	GAAGA	4 cut(s)	169, 232, 389, 405
MlsI	TGGCCA	2 cut(s)	41, 80
MluCI	AATT	1 cut(s)	116
MluNI	TGGCCA	2 cut(s)	41, 80
MlyI	GAGTC	2 cut(s)	178, 347
MnlI	CCTC	2 cut(s)	297, 366
Mox20I	TGGCCA	2 cut(s)	41, 80
MscI	TGGCCA	2 cut(s)	41, 80
MseI	TTAA	1 cut(s)	141
MslI	CAYNNNNRTG	1 cut(s)	26
Msp20I	TGGCCA	2 cut(s)	41, 80
MspA1I	CMGCKG	1 cut(s)	233
MspR9I	CCNGG	1 cut(s)	279
MvaI	CCWGG	1 cut(s)	279
NdeII	GATC	1 cut(s)	401
NlaIII	CATG	1 cut(s)	25
PciSI	GCTCTTC	1 cut(s)	152
PfeI	GAWTC	1 cut(s)	329
PflFI	GACNNNGTC	1 cut(s)	337
PkrI	GCNGC	1 cut(s)	387
PleI	GAGTC	2 cut(s)	178, 346
PpsI	GAGTC	2 cut(s)	178, 346
PshBI	ATTAAT	1 cut(s)	141
Psp6I	CCWGG	1 cut(s)	277
PspGI	CCWGG	1 cut(s)	277
PspPI	GGNCC	1 cut(s)	57
PsyI	GACNNNGTC	1 cut(s)	337
PvuII	CAGCTG	1 cut(s)	233
RseI	CAYNNNNRTG	1 cut(s)	26
SapI	GCTCTTC	1 cut(s)	152
SaqAI	TTAA	1 cut(s)	141
SatI	GCNGC	1 cut(s)	386
Sau3AI	GATC	1 cut(s)	401
Sau96I	GGNCC	1 cut(s)	57
SchI	GAGTC	2 cut(s)	178, 347
ScrFI	CCNGG	1 cut(s)	279
SetI	ASST	6 cut(s)	39, 126, 131, 235, 354, 393
SmiMI	CAYNNNNRTG	1 cut(s)	26
SmlI	CTYRAG	1 cut(s)	215
SmoI	CTYRAG	1 cut(s)	215
Sse9I	AATT	1 cut(s)	116
SsiI	CCGC	1 cut(s)	386
SspI	AATATT	1 cut(s)	139
StyD4I	CCNGG	1 cut(s)	277
TaaI	ACNGT	2 cut(s)	209, 301
TaiI	ACGT	1 cut(s)	393
TaqI	TCGA	2 cut(s)	332, 400
TaqII	GACCGA	1 cut(s)	36
TasI	AATT	1 cut(s)	116
TauI	GCSGC	1 cut(s)	388
TfiI	GAWTC	1 cut(s)	329
Tru1I	TTAA	1 cut(s)	141
Tru9I	TTAA	1 cut(s)	141
TscAI	CASTG	1 cut(s)	214
TspDTI	ATGAA	2 cut(s)	17, 29
TspGWI	ACGGA	1 cut(s)	350
TspRI	CASTG	1 cut(s)	214
Tth111I	GACNNNGTC	1 cut(s)	337
VspI	ATTAAT	1 cut(s)	141

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.