RchiOBHm_Chr5g0036011
ERF Family

Belongs to the protein kinase superfamily. Ser Thr protein kinase family

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
Physical Location & Seq
Forward (+)
30140313 .. 30140712
400 bp
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UTR
Exon/CDS
Intron
PRQ31483

Sequence Viewer

Length: 288 bp
ATGCCTCTGCCTGATTGTTCTTGGATTTGGAGTAGTTATGATGGAGGCAAACATGAATTCTTTGATGTTAAAGACAAGCATCATGAAGAAATTTCGCTCTGGAACTTGAAGAGATTTCATTTAAGAGAACTTCAAATTGCAACAAATAACTTCAACAGCAAGTACCTACTAAGAAAGGGAGGCTTTGGACATGTTTACAAAGGAACTATCTGCGATGGCACTGTCGTAGCAGTCAAGAGACTTAAAGATGGCAGTGCTCTTGGTGGAGAGATTCAATTCCAGACTTAA

Protein Analysis

95

Amino Acids

10.91

Weight (kDa)

8.6

Isoelectric Point (pI)

39.82

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 2 cut(s) 56, 90
AfaI GTAC 1 cut(s) 164
AflIII ACRYGT 1 cut(s) 190
AgsI TTSAA 4 cut(s) 109, 134, 154, 275
Alw21I GWGCWC 1 cut(s) 259
Alw26I GTCTC 1 cut(s) 232
ApoI RAATTY 2 cut(s) 56, 90
Bbv12I GWGCWC 1 cut(s) 259
BccI CCATC 3 cut(s) 35, 209, 242
BcoDI GTCTC 1 cut(s) 232
BmsI GCATC 1 cut(s) 88
BsiHKAI GWGCWC 1 cut(s) 259
BsmAI GTCTC 1 cut(s) 232
Bsp1286I GDGCHC 1 cut(s) 259
BspHI TCATGA 1 cut(s) 82
Bst4CI ACNGT 1 cut(s) 223
Bst6I CTCTTC 1 cut(s) 104
BstDEI CTNAG 1 cut(s) 170
BstMAI GTCTC 1 cut(s) 232
BstNSI RCATGY 1 cut(s) 194
BtgZI GCGATG 1 cut(s) 228
BtsI GCAGTG 1 cut(s) 259
BtsIMutI CAGTG 2 cut(s) 219, 259
CciI TCATGA 1 cut(s) 82
Csp6I GTAC 1 cut(s) 163
CviAII CATG 3 cut(s) 53, 83, 191
CviJI RGCY 1 cut(s) 183
CviKI_1 RGCY 1 cut(s) 183
CviQI GTAC 1 cut(s) 163
DdeI CTNAG 1 cut(s) 170
Eam1104I CTCTTC 1 cut(s) 104
EarI CTCTTC 1 cut(s) 104
EcoRI GAATTC 1 cut(s) 56
FaeI CATG 3 cut(s) 56, 86, 194
FaiI YATR 4 cut(s) 39, 54, 84, 192
FalI AAGNNNNNCTT 2 cut(s) 167, 199
FatI CATG 3 cut(s) 52, 82, 190
Hin1II CATG 3 cut(s) 56, 86, 194
HinfI GANTC 1 cut(s) 271
Hpy166II GTNNAC 1 cut(s) 196
Hpy188III TCNNGA 4 cut(s) 83, 100, 235, 280
Hpy8I GTNNAC 1 cut(s) 196
HpyCH4III ACNGT 1 cut(s) 223
HpyCH4V TGCA 1 cut(s) 140
HpyF3I CTNAG 1 cut(s) 170
Hsp92II CATG 3 cut(s) 56, 86, 194
LpnPI CCDG 2 cut(s) 24, 85
LweI GCATC 1 cut(s) 88
MboII GAAGA 2 cut(s) 98, 121
MhlI GDGCHC 1 cut(s) 259
MluCI AATT 4 cut(s) 56, 90, 135, 275
MnlI CCTC 3 cut(s) 15, 38, 173
MseI TTAA 4 cut(s) 69, 122, 243, 286
NlaIII CATG 3 cut(s) 56, 86, 194
NspI RCATGY 1 cut(s) 194
PagI TCATGA 1 cut(s) 82
PciI ACATGT 1 cut(s) 190
PfeI GAWTC 1 cut(s) 271
PscI ACATGT 1 cut(s) 190
RsaI GTAC 1 cut(s) 164
RsaNI GTAC 1 cut(s) 163
SaqAI TTAA 4 cut(s) 69, 122, 243, 286
SduI GDGCHC 1 cut(s) 259
SetI ASST 1 cut(s) 168
SfaNI GCATC 1 cut(s) 88
Sse9I AATT 4 cut(s) 56, 90, 135, 275
TaaI ACNGT 1 cut(s) 223
TasI AATT 4 cut(s) 56, 90, 135, 275
TfiI GAWTC 1 cut(s) 271
Tru1I TTAA 4 cut(s) 69, 122, 243, 286
Tru9I TTAA 4 cut(s) 69, 122, 243, 286
TscAI CASTG 2 cut(s) 226, 259
TspDTI ATGAA 3 cut(s) 69, 99, 107
TspRI CASTG 2 cut(s) 226, 259
XapI RAATTY 2 cut(s) 56, 90
XceI RCATGY 1 cut(s) 194
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.