Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0001411

Physical Location & Seq

Genomic Coordinates Forward (+)

48017893 .. 48027379

Gene Structure 9487 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG380700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 435 bp

ATGGTTGCGCTTGTATCGTCTTCGAAACGTCGTAAGCTCACCTGGGAGGAGCCTATGAATGAAGTGTTAATGTCTGACTCAGAAGGTGTTCAGGGTCGGGAAGATGAGGGGGAGCATCAGGATATTGAGAAGAAGGTTGAAAAGTCGCGGCTATTTAACGTGCCTGTTGCAGAATATGGTTTGGGAAGGAATAGGTTAGACTTATTGGTGTCCAATGAGAAGAAAACGAAGGGGAGGGGGCAGAGCCTGGTAGTGCAGCCTTTTTATATATCTGATGCACTTTTCTCTCTGCAACTAACTCATCTCGGATCCAGAATTGCTCCTACTCCAGCCAGAATTCTGTATTTAGCTAAGCAGCCTAGTATACGCCAACCTAAGTCAGGAGGCTACCATCCTTACCCAGTTTATTCTTGTTATTATTCTGCTTTTTGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

144

Amino Acids

16.31

Weight (kDa)

9.08

Isoelectric Point (pI)

61.52

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0001411)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0372821 RchiOBHm_Chr2g0120391 RchiOBHm_Chr3g0472751 RchiOBHm_Chr5g0036011 RchiOBHm_Chr6g0269661 RchiOBHm_Chr7g0231021
rosa_laevigata	RLG00000000534 RLG00000003816
rosa_multiflora	Rmu_sc0000084.1_g000050 Rmu_sc0001493.1_g000009 Rmu_sc0001851.1_g000026 Rmu_sc0003198.1_g000001 Rmu_sc0003198.1_g000002 Rmu_sc0004226.1_g000003 Rmu_sc0005738.1_g000004 Rmu_sc0006380.1_g000004 Rmu_sc0012041.1_g000003 Rmu_sc0017397.1_g000001
rosa_roxburghii	Rroxscaffold_4G00313360
rosa_rugosa	Rorug03G0325800 Rorug04G0073800 Rorug06G0052600
rosa_samantha	Rh1CG021400 Rh2CG235800 Rh2DG107900 Rh3AG180200 Rh3BG065800 Rh3BG206400 Rh3CG064500 Rh3CG203500 Rh3CG221800 Rh3CG270900 Rh3DG065700 Rh3DG132500 Rh3DG266800 Rh4AG242700 Rh4BG140300 Rh4BG140400 Rh4CG033900 Rh5AG093800 Rh5BG377400 Rh5BG426700 Rh5DG440600 Rh6AG048200 Rh6AG074100 Rh6AG148600 Rh6AG196800 Rh6AG406100 Rh7AG362100 Rh7BG138700 Rh7CG380700 Rh7DG335500
rosa_wichuraiana	Rw3G013510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	364
AccII	CGCG	1 cut(s)	148
AciI	CCGC	1 cut(s)	148
AclWI	GGATC	2 cut(s)	303, 316
AcsI	RAATTY	1 cut(s)	336
AfiI	CCNNNNNNNGG	1 cut(s)	380
AgsI	TTSAA	1 cut(s)	140
AjnI	CCWGG	2 cut(s)	41, 246
AluBI	AGCT	2 cut(s)	37, 350
AluI	AGCT	2 cut(s)	37, 350
AlwI	GGATC	2 cut(s)	303, 316
AlwNI	CAGNNNCTG	1 cut(s)	247
ApeKI	GCWGC	2 cut(s)	256, 355
ApoI	RAATTY	1 cut(s)	336
Asp700I	GAANNNNTTC	1 cut(s)	87
AspLEI	GCGC	1 cut(s)	10
AsuHPI	GGTGA	1 cut(s)	31
AsuII	TTCGAA	1 cut(s)	23
BamHI	GGATCC	1 cut(s)	308
BbsI	GAAGAC	1 cut(s)	12
BbvI	GCAGC	2 cut(s)	268, 367
BccI	CCATC	1 cut(s)	399
BciT130I	CCWGG	2 cut(s)	43, 248
BfaI	CTAG	1 cut(s)	360
BisI	GCNGC	3 cut(s)	149, 257, 356
BlpI	GCTNAGC	1 cut(s)	351
BlsI	GCNGC	3 cut(s)	150, 258, 357
Bme1390I	CCNGG	2 cut(s)	43, 248
BmiI	GGNNCC	2 cut(s)	51, 310
BmrFI	CCNGG	2 cut(s)	43, 248
BmrI	ACTGGG	1 cut(s)	395
BmsI	GCATC	2 cut(s)	124, 265
BmuI	ACTGGG	1 cut(s)	395
BpiI	GAAGAC	1 cut(s)	12
BpmI	CTGGAG	1 cut(s)	312
Bpu1102I	GCTNAGC	1 cut(s)	351
Bpu14I	TTCGAA	1 cut(s)	23
BsaJI	CCNNGG	1 cut(s)	42
Bsc4I	CCNNNNNNNGG	1 cut(s)	380
Bse1I	ACTGG	1 cut(s)	401
BseBI	CCWGG	2 cut(s)	43, 248
BseDI	CCNNGG	1 cut(s)	42
BseGI	GGATG	1 cut(s)	391
BseLI	CCNNNNNNNGG	1 cut(s)	380
BseMII	CTCAG	1 cut(s)	93
BseNI	ACTGG	1 cut(s)	401
BseRI	GAGGAG	1 cut(s)	62
BseXI	GCAGC	2 cut(s)	268, 367
BsgI	GTGCAG	1 cut(s)	275
Bsh1236I	CGCG	1 cut(s)	148
BslI	CCNNNNNNNGG	1 cut(s)	380
Bsp119I	TTCGAA	1 cut(s)	23
Bsp143I	GATC	1 cut(s)	308
Bsp1720I	GCTNAGC	1 cut(s)	351
BspACI	CCGC	1 cut(s)	148
BspCNI	CTCAG	1 cut(s)	92
BspFNI	CGCG	1 cut(s)	148
BspLI	GGNNCC	2 cut(s)	51, 310
BspPI	GGATC	2 cut(s)	303, 316
BspT104I	TTCGAA	1 cut(s)	23
BsrI	ACTGG	1 cut(s)	401
BssECI	CCNNGG	1 cut(s)	42
BssMI	GATC	1 cut(s)	308
BssNAI	GTATAC	1 cut(s)	365
Bst1107I	GTATAC	1 cut(s)	365
Bst2UI	CCWGG	2 cut(s)	43, 248
BstBI	TTCGAA	1 cut(s)	23
BstDEI	CTNAG	3 cut(s)	79, 351, 375
BstENI	CCTNNNNNAGG	1 cut(s)	378
BstF5I	GGATG	1 cut(s)	391
BstFNI	CGCG	1 cut(s)	148
BstHHI	GCGC	1 cut(s)	10
BstKTI	GATC	1 cut(s)	311
BstMBI	GATC	1 cut(s)	308
BstNI	CCWGG	2 cut(s)	43, 248
BstSCI	CCNGG	2 cut(s)	41, 246
BstUI	CGCG	1 cut(s)	148
BstV1I	GCAGC	2 cut(s)	268, 367
BstV2I	GAAGAC	1 cut(s)	12
BstX2I	RGATCY	1 cut(s)	308
BstYI	RGATCY	1 cut(s)	308
BstZ17I	GTATAC	1 cut(s)	365
BtsCI	GGATG	1 cut(s)	391
CaiI	CAGNNNCTG	1 cut(s)	247
CfoI	GCGC	1 cut(s)	10
CviJI	RGCY	9 cut(s)	37, 52, 151, 246, 259, 332, 350, 358, 387
CviKI_1	RGCY	9 cut(s)	37, 52, 151, 246, 259, 332, 350, 358, 387
DdeI	CTNAG	3 cut(s)	79, 351, 375
DpnI	GATC	1 cut(s)	310
DpnII	GATC	1 cut(s)	308
EcoNI	CCTNNNNNAGG	1 cut(s)	378
EcoRI	GAATTC	1 cut(s)	336
EcoRII	CCWGG	2 cut(s)	41, 246
FaiI	YATR	5 cut(s)	56, 177, 267, 269, 365
FblI	GTMKAC	1 cut(s)	364
Fnu4HI	GCNGC	3 cut(s)	149, 257, 356
FokI	GGATG	1 cut(s)	378
Fsp4HI	GCNGC	3 cut(s)	149, 257, 356
FspBI	CTAG	1 cut(s)	360
GlaI	GCGC	1 cut(s)	9
GluI	GCNGC	3 cut(s)	149, 257, 356
GsuI	CTGGAG	1 cut(s)	312
HhaI	GCGC	1 cut(s)	10
Hin6I	GCGC	1 cut(s)	8
HinP1I	GCGC	1 cut(s)	8
HinfI	GANTC	1 cut(s)	77
HphI	GGTGA	1 cut(s)	31
Hpy166II	GTNNAC	1 cut(s)	365
Hpy188I	TCNGA	4 cut(s)	76, 82, 274, 308
Hpy188III	TCNNGA	4 cut(s)	98, 119, 312, 381
Hpy8I	GTNNAC	1 cut(s)	365
Hpy99I	CGWCG	1 cut(s)	33
HpyAV	CCTTC	4 cut(s)	77, 127, 180, 223
HpyCH4IV	ACGT	2 cut(s)	28, 159
HpyCH4V	TGCA	4 cut(s)	170, 256, 278, 292
HpyF3I	CTNAG	3 cut(s)	79, 351, 375
HpySE526I	ACGT	2 cut(s)	28, 159
HspAI	GCGC	1 cut(s)	8
Kzo9I	GATC	1 cut(s)	308
LmnI	GCTCC	3 cut(s)	49, 112, 325
Lsp1109I	GCAGC	2 cut(s)	268, 367
LweI	GCATC	2 cut(s)	124, 265
MaeI	CTAG	1 cut(s)	360
MaeII	ACGT	2 cut(s)	28, 159
MalI	GATC	1 cut(s)	310
MboI	GATC	1 cut(s)	308
MboII	GAAGA	4 cut(s)	12, 113, 142, 232
MflI	RGATCY	1 cut(s)	308
MluCI	AATT	2 cut(s)	315, 336
MlyI	GAGTC	1 cut(s)	71
MnlI	CCTC	4 cut(s)	40, 100, 228, 377
MroXI	GAANNNNTTC	1 cut(s)	87
MseI	TTAA	2 cut(s)	68, 156
MspR9I	CCNGG	2 cut(s)	43, 248
MvaI	CCWGG	2 cut(s)	43, 248
MvnI	CGCG	1 cut(s)	148
NdeII	GATC	1 cut(s)	308
NlaIV	GGNNCC	2 cut(s)	51, 310
NspV	TTCGAA	1 cut(s)	23
PdmI	GAANNNNTTC	1 cut(s)	87
PkrI	GCNGC	3 cut(s)	150, 258, 357
PleI	GAGTC	1 cut(s)	71
PpsI	GAGTC	1 cut(s)	71
Psp6I	CCWGG	2 cut(s)	41, 246
PspGI	CCWGG	2 cut(s)	41, 246
PspN4I	GGNNCC	2 cut(s)	51, 310
PstNI	CAGNNNCTG	1 cut(s)	247
PsuI	RGATCY	1 cut(s)	308
SaqAI	TTAA	2 cut(s)	68, 156
SatI	GCNGC	3 cut(s)	149, 257, 356
Sau3AI	GATC	1 cut(s)	308
SchI	GAGTC	1 cut(s)	71
ScrFI	CCNGG	2 cut(s)	43, 248
SetI	ASST	9 cut(s)	31, 39, 44, 88, 138, 162, 197, 352, 376
SfaNI	GCATC	2 cut(s)	124, 265
SfuI	TTCGAA	1 cut(s)	23
Sse9I	AATT	2 cut(s)	315, 336
SsiI	CCGC	1 cut(s)	148
SspMI	CTAG	1 cut(s)	360
StyD4I	CCNGG	2 cut(s)	41, 246
TaiI	ACGT	2 cut(s)	31, 162
TaqI	TCGA	1 cut(s)	23
TasI	AATT	2 cut(s)	315, 336
TauI	GCSGC	1 cut(s)	151
Tru1I	TTAA	2 cut(s)	68, 156
Tru9I	TTAA	2 cut(s)	68, 156
TseI	GCWGC	2 cut(s)	256, 355
TspDTI	ATGAA	2 cut(s)	71, 75
XagI	CCTNNNNNAGG	1 cut(s)	378
XapI	RAATTY	1 cut(s)	336
XmiI	GTMKAC	1 cut(s)	364
XmnI	GAANNNNTTC	1 cut(s)	87
XspI	CTAG	1 cut(s)	360

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.