Rh7BG138700

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
OG0001411
Physical Location & Seq
Forward (+)
10324241 .. 10325601
1361 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG138700.1

Sequence Viewer

Length: 735 bp
ATGTGGGGGTTTCTTCACGTCGTGCAGAAGGTATGGTTGGTTTTTGAGAAAGTTTTTTCGAGCATAGAGGACGTAGTAGGCCAGTTCTCTCGTCATCTTGGTATTCAAGATGATGATGACCTAGAGGTGATTACAGTAGATGACCCGAAATCGCTGATGGCTGAGAGGTTCTGGCTAGTAGGGAAGGTCCTTACCGTTGCAAGGAAGGTCTTCGGGCTATTTCCGAGTAAGAAGATGTGGTCTATGAATGCTCCGGACATTGGTGTTTGTGGAGTAGAGCGAGAAGAGATGACTGATTTGGAAGGTGCAGAAGCTGAGAAAGAGGGAGGCAAACCAGGATTATTTGAGCAATGCAATGTAGTCAAGCGTCGGAAACTTAATTGGGAGCAACCTATAGAAGAGGTGACAATGGCCGAGCCTAGTTCCGATGGCATGATTGAACGGGGAAGTAATGAGAAAAACAGGCTGGTTTTGGAGAAAGACTCTGACATACTAAAACTATTCAACGTTCCAATGTCTACTAGCACTTTTAGAATAAAAGTTTATACTAGAAGTGCTACTGCTGGGAAAGGAGTTAAGGGATGTGTGAAGGAACATGGAGTAGGGGAAAATGATAGTTCTCCAAAAAAGAAAGTTTGTGGGAAGGGTAAGAAGATTATGGTTGGAGAAGATGCTTCTAAGGGTGAGAAGGGTAAGAAGAATCTGGTTAGAGAAGTGTTTCTAAGGGTGGTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

244

Amino Acids

27.31

Weight (kDa)

8.23

Isoelectric Point (pI)

31.52

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 518
AccIII TCCGGA 1 cut(s) 253
AclI AACGTT 1 cut(s) 507
AcoI YGGCCR 1 cut(s) 411
AdeI CACNNNGTG 1 cut(s) 22
AfiI CCNNNNNNNGG 2 cut(s) 201, 260
AgsI TTSAA 3 cut(s) 107, 440, 505
AjiI CACGTC 1 cut(s) 19
AjnI CCWGG 1 cut(s) 334
AjuI GAANNNNNNNTTGG 2 cut(s) 20, 52
AluBI AGCT 1 cut(s) 314
AluI AGCT 1 cut(s) 314
AlwNI CAGNNNCTG 1 cut(s) 314
Aor13HI TCCGGA 1 cut(s) 253
AoxI GGCC 2 cut(s) 79, 411
Asp700I GAANNNNTTC 2 cut(s) 209, 717
AspS9I GGNCC 1 cut(s) 187
AsuHPI GGTGA 3 cut(s) 139, 415, 695
AvaII GGWCC 1 cut(s) 187
BbsI GAAGAC 1 cut(s) 202
BccI CCATC 2 cut(s) 151, 422
BciT130I CCWGG 1 cut(s) 336
BfaI CTAG 5 cut(s) 122, 176, 420, 522, 549
BfmI CTRYAG 1 cut(s) 393
Bme1390I CCNGG 1 cut(s) 336
Bme18I GGWCC 1 cut(s) 187
BmgBI CACGTC 1 cut(s) 19
BmgT120I GGNCC 1 cut(s) 187
BmrFI CCNGG 1 cut(s) 336
BmsI GCATC 1 cut(s) 661
BpiI GAAGAC 1 cut(s) 202
BplI GAGNNNNNCTC 2 cut(s) 467, 499
BsaWI WCCGGW 1 cut(s) 253
Bsc4I CCNNNNNNNGG 2 cut(s) 201, 260
Bse1I ACTGG 1 cut(s) 82
Bse3DI GCAATG 2 cut(s) 356, 361
BseAI TCCGGA 1 cut(s) 253
BseBI CCWGG 1 cut(s) 336
BseGI GGATG 1 cut(s) 587
BseLI CCNNNNNNNGG 2 cut(s) 201, 260
BseMI GCAATG 2 cut(s) 356, 361
BseMII CTCAG 2 cut(s) 153, 306
BseNI ACTGG 1 cut(s) 82
BseYI CCCAGC 1 cut(s) 563
BsgI GTGCAG 2 cut(s) 44, 327
BshFI GGCC 2 cut(s) 81, 413
BsiSI CCGG 1 cut(s) 254
BslI CCNNNNNNNGG 2 cut(s) 201, 260
BsmI GAATGC 1 cut(s) 253
BsnI GGCC 2 cut(s) 81, 413
Bsp13I TCCGGA 1 cut(s) 253
BspANI GGCC 2 cut(s) 81, 413
BspCNI CTCAG 2 cut(s) 154, 307
BspEI TCCGGA 1 cut(s) 253
BsrDI GCAATG 2 cut(s) 356, 361
BsrI ACTGG 1 cut(s) 82
Bst2UI CCWGG 1 cut(s) 336
Bst4CI ACNGT 2 cut(s) 136, 196
Bst6I CTCTTC 2 cut(s) 279, 393
BstDEI CTNAG 4 cut(s) 162, 315, 678, 722
BstF5I GGATG 1 cut(s) 587
BstNI CCWGG 1 cut(s) 336
BstSCI CCNGG 1 cut(s) 334
BstSFI CTRYAG 1 cut(s) 393
BstV2I GAAGAC 1 cut(s) 202
BsuRI GGCC 2 cut(s) 81, 413
BtrI CACGTC 1 cut(s) 19
BtsCI GGATG 1 cut(s) 587
CaiI CAGNNNCTG 1 cut(s) 314
Cfr13I GGNCC 1 cut(s) 187
CseI GACGC 1 cut(s) 356
CviAII CATG 2 cut(s) 433, 596
CviJI RGCY 8 cut(s) 81, 161, 175, 217, 314, 413, 418, 466
CviKI_1 RGCY 8 cut(s) 81, 161, 175, 217, 314, 413, 418, 466
DdeI CTNAG 4 cut(s) 162, 315, 678, 722
DraIII CACNNNGTG 1 cut(s) 22
EaeI YGGCCR 1 cut(s) 411
Eam1104I CTCTTC 2 cut(s) 279, 393
EarI CTCTTC 2 cut(s) 279, 393
Eco47I GGWCC 1 cut(s) 187
EcoO109I RGGNCCY 1 cut(s) 187
EcoRII CCWGG 1 cut(s) 334
FaeI CATG 2 cut(s) 436, 599
FaiI YATR 9 cut(s) 34, 65, 245, 395, 434, 491, 546, 597, 659
FatI CATG 2 cut(s) 432, 595
FblI GTMKAC 1 cut(s) 518
FokI GGATG 1 cut(s) 594
FspBI CTAG 5 cut(s) 122, 176, 420, 522, 549
GsaI CCCAGC 1 cut(s) 567
HaeIII GGCC 2 cut(s) 81, 413
HapII CCGG 1 cut(s) 254
HgaI GACGC 1 cut(s) 356
Hin1II CATG 2 cut(s) 436, 599
HinfI GANTC 2 cut(s) 482, 700
HpaII CCGG 1 cut(s) 254
HphI GGTGA 3 cut(s) 139, 415, 695
Hpy166II GTNNAC 1 cut(s) 519
Hpy188I TCNGA 4 cut(s) 225, 372, 427, 487
Hpy188III TCNNGA 2 cut(s) 107, 254
Hpy8I GTNNAC 1 cut(s) 519
Hpy99I CGWCG 2 cut(s) 23, 372
HpyAV CCTTC 7 cut(s) 22, 178, 199, 296, 583, 637, 682
HpyCH4III ACNGT 2 cut(s) 136, 196
HpyCH4IV ACGT 3 cut(s) 18, 72, 507
HpyCH4V TGCA 4 cut(s) 25, 200, 308, 354
HpyF3I CTNAG 4 cut(s) 162, 315, 678, 722
HpySE526I ACGT 3 cut(s) 18, 72, 507
Hsp92II CATG 2 cut(s) 436, 599
Kpn2I TCCGGA 1 cut(s) 253
LmnI GCTCC 2 cut(s) 256, 385
LpnPI CCDG 9 cut(s) 95, 157, 267, 321, 348, 448, 452, 549, 689
LweI GCATC 1 cut(s) 661
MaeI CTAG 5 cut(s) 122, 176, 420, 522, 549
MaeII ACGT 3 cut(s) 18, 72, 507
MaeIII GTNAC 1 cut(s) 403
MboII GAAGA 8 cut(s) 5, 202, 244, 296, 410, 664, 680, 709
MluCI AATT 1 cut(s) 379
MlyI GAGTC 1 cut(s) 476
MmeI TCCRAC 2 cut(s) 350, 643
MnlI CCTC 6 cut(s) 61, 118, 159, 316, 320, 394
MroI TCCGGA 1 cut(s) 253
MroXI GAANNNNTTC 2 cut(s) 209, 717
MseI TTAA 2 cut(s) 378, 576
MspI CCGG 1 cut(s) 254
MspR9I CCNGG 1 cut(s) 336
Mva1269I GAATGC 1 cut(s) 253
MvaI CCWGG 1 cut(s) 336
NlaIII CATG 2 cut(s) 436, 599
NmeAIII GCCGAG 1 cut(s) 439
NmuCI GTSAC 1 cut(s) 403
PctI GAATGC 1 cut(s) 253
PdmI GAANNNNTTC 2 cut(s) 209, 717
PfeI GAWTC 1 cut(s) 700
PleI GAGTC 1 cut(s) 476
PpsI GAGTC 1 cut(s) 476
PpuMI RGGWCCY 1 cut(s) 187
Psp1406I AACGTT 1 cut(s) 507
Psp5II RGGWCCY 1 cut(s) 187
Psp6I CCWGG 1 cut(s) 334
PspFI CCCAGC 1 cut(s) 563
PspGI CCWGG 1 cut(s) 334
PspPI GGNCC 1 cut(s) 187
PspPPI RGGWCCY 1 cut(s) 187
PstNI CAGNNNCTG 1 cut(s) 314
SaqAI TTAA 2 cut(s) 378, 576
Sau96I GGNCC 1 cut(s) 187
SchI GAGTC 1 cut(s) 476
ScrFI CCNGG 1 cut(s) 336
SfaNI GCATC 1 cut(s) 661
SfcI CTRYAG 1 cut(s) 393
SinI GGWCC 1 cut(s) 187
Sse9I AATT 1 cut(s) 379
SspMI CTAG 5 cut(s) 122, 176, 420, 522, 549
StyD4I CCNGG 1 cut(s) 334
TaaI ACNGT 2 cut(s) 136, 196
TaiI ACGT 3 cut(s) 21, 75, 510
TaqI TCGA 1 cut(s) 59
TasI AATT 1 cut(s) 379
TfiI GAWTC 1 cut(s) 700
Tru1I TTAA 2 cut(s) 378, 576
Tru9I TTAA 2 cut(s) 378, 576
TseFI GTSAC 1 cut(s) 403
Tsp45I GTSAC 1 cut(s) 403
TspDTI ATGAA 1 cut(s) 260
VpaK11BI GGWCC 1 cut(s) 187
XmiI GTMKAC 1 cut(s) 518
XmnI GAANNNNTTC 2 cut(s) 209, 717
XspI CTAG 5 cut(s) 122, 176, 420, 522, 549
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.