Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001411

Physical Location & Seq

Genomic Coordinates Forward (+)

18729508 .. 18730562

Gene Structure 1055 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ43844

Sequence Viewer

CDS Protein Promoter (2k)

Length: 714 bp

ATGAGTGTGGTAAAAAATTTAGCCAATTTCACGATATTTTTGAATCCGATCGAATTGATAAACCGTAATCTTCGCATTAGCCCAACAAAATTTCCCTCTTTTTGTTTTTGGTTTTCTTTTGTCCAAATTTCCTACAAACAAAACAACCCTAATTTTTTCCCTCTTTTTCCCAAAGTCCCAAACATCACCGCGCGCTCTCTCTCTGTCTCTCTCGCCCAGAACCTCACCGCTCTCTCTCTCTGTCTCTCTCGTCAAAACCTATCTCAGTCCCAGGCTCCCAGCTCCTTGCTTGTATTCTTTATCCAAATCCTCTCTCTCTTCAGCAAAATCGAAATCCTCTTTATCCAAAGTGCCCCTCCTAAAATACCAAACACCCAGATCTCAGCTCTCACTCTTGCCCCTCGGCGTCAGCAAATCCAATCTCCTCTCCAGAACCCTCAACGTCGACGTAGCTGGCCAATCGGTCATCAAGGCCCAGATTTAGGACACTTTTGGCCAAGAAAGGTCAGCTTTCTGAATATTAATGGTTTCGGTTTGAAGAGCAGTAAGAAACCCAAATCAAAGACTCCGGCAAAGAAGCCCAAAGACAGTGTTCTTGAGCAGAAATCTCCAGCTGAGTTCTTCGCTGAGAACAAGAACATTGCTGGATTTGGTAATAGGGATTTGGAGTGTCTGACTTTGGATGTTTTAGCCAGGGAAATGTCTTTATACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000902 GO:0003674 GO:0003735 GO:0003824 GO:0003916 GO:0003918 GO:0005198 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006412 GO:0006518 GO:0006725 GO:0006807 GO:0007049 GO:0007275 GO:0007389 GO:0008094 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009330 GO:0009653 GO:0009719 GO:0009725 GO:0009741 GO:0009888 GO:0009987 GO:0010026 GO:0010033 GO:0010467 GO:0014070 GO:0015935 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016853 GO:0016887 GO:0017111 GO:0019538 GO:0022402 GO:0022613 GO:0030154 GO:0032501 GO:0032502 GO:0032989 GO:0032991 GO:0033993 GO:0034641 GO:0034645 GO:0042023 GO:0042221 GO:0042254 GO:0042623 GO:0042802 GO:0042803 GO:0043043 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043603 GO:0043604 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044446 GO:0044464 GO:0044786 GO:0046483 GO:0046983 GO:0048856 GO:0048869 GO:0050896 GO:0061505 GO:0071704 GO:0071840 GO:0090304 GO:0090558 GO:0140097 GO:1901360 GO:1901564 GO:1901566 GO:1901576 GO:1901700 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HATPase_c HATPase_c_3 Topo-VIb_trans

Protein Analysis

237

Amino Acids

26.83

Weight (kDa)

10.42

Isoelectric Point (pI)

66.97

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001411)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0372821 RchiOBHm_Chr2g0120391 RchiOBHm_Chr3g0472751 RchiOBHm_Chr5g0036011 RchiOBHm_Chr6g0269661 RchiOBHm_Chr7g0231021
rosa_laevigata	RLG00000000534 RLG00000003816
rosa_multiflora	Rmu_sc0000084.1_g000050 Rmu_sc0001493.1_g000009 Rmu_sc0001851.1_g000026 Rmu_sc0003198.1_g000001 Rmu_sc0003198.1_g000002 Rmu_sc0004226.1_g000003 Rmu_sc0005738.1_g000004 Rmu_sc0006380.1_g000004 Rmu_sc0012041.1_g000003 Rmu_sc0017397.1_g000001
rosa_roxburghii	Rroxscaffold_4G00313360
rosa_rugosa	Rorug03G0325800 Rorug04G0073800 Rorug06G0052600
rosa_samantha	Rh1CG021400 Rh2CG235800 Rh2DG107900 Rh3AG180200 Rh3BG065800 Rh3BG206400 Rh3CG064500 Rh3CG203500 Rh3CG221800 Rh3CG270900 Rh3DG065700 Rh3DG132500 Rh3DG266800 Rh4AG242700 Rh4BG140300 Rh4BG140400 Rh4CG033900 Rh5AG093800 Rh5BG377400 Rh5BG426700 Rh5DG440600 Rh6AG048200 Rh6AG074100 Rh6AG148600 Rh6AG196800 Rh6AG406100 Rh7AG362100 Rh7BG138700 Rh7CG380700 Rh7DG335500
rosa_wichuraiana	Rw3G013510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	230
AccI	GTMKAC	1 cut(s)	445
AccII	CGCG	2 cut(s)	191, 193
AciI	CCGC	2 cut(s)	189, 228
AcoI	YGGCCR	2 cut(s)	455, 494
AcsI	RAATTY	3 cut(s)	16, 89, 126
AcuI	CTGAAG	1 cut(s)	304
AcyI	GRCGYC	1 cut(s)	406
AfiI	CCNNNNNNNGG	1 cut(s)	482
AgsI	TTSAA	2 cut(s)	43, 538
AjnI	CCWGG	2 cut(s)	270, 692
AluBI	AGCT	5 cut(s)	282, 386, 453, 510, 614
AluI	AGCT	5 cut(s)	282, 386, 453, 510, 614
Alw26I	GTCTC	2 cut(s)	211, 248
AoxI	GGCC	3 cut(s)	455, 472, 494
ApoI	RAATTY	3 cut(s)	16, 89, 126
AseI	ATTAAT	1 cut(s)	522
AspLEI	GCGC	2 cut(s)	193, 195
AspS9I	GGNCC	1 cut(s)	473
AsuHPI	GGTGA	2 cut(s)	178, 217
BaeGI	GKGCMC	1 cut(s)	355
BalI	TGGCCA	2 cut(s)	457, 496
BciT130I	CCWGG	2 cut(s)	272, 694
BcoDI	GTCTC	2 cut(s)	211, 248
BglII	AGATCT	1 cut(s)	378
Bme1390I	CCNGG	2 cut(s)	272, 694
BmgT120I	GGNCC	1 cut(s)	473
BmiI	GGNNCC	1 cut(s)	276
BmrFI	CCNGG	2 cut(s)	272, 694
BpmI	CTGGAG	2 cut(s)	413, 594
BpuEI	CTTGAG	1 cut(s)	617
BsaHI	GRCGYC	1 cut(s)	406
BsaJI	CCNNGG	3 cut(s)	270, 401, 693
Bsc4I	CCNNNNNNNGG	1 cut(s)	482
Bse3DI	GCAATG	1 cut(s)	639
BseBI	CCWGG	2 cut(s)	272, 694
BseDI	CCNNGG	3 cut(s)	270, 401, 693
BseGI	GGATG	1 cut(s)	688
BseLI	CCNNNNNNNGG	1 cut(s)	482
BseMI	GCAATG	1 cut(s)	639
BseMII	CTCAG	4 cut(s)	278, 396, 606, 618
BsePI	GCGCGC	1 cut(s)	191
BseRI	GAGGAG	1 cut(s)	414
BseSI	GKGCMC	1 cut(s)	355
BseYI	CCCAGC	1 cut(s)	278
Bsh1236I	CGCG	2 cut(s)	191, 193
Bsh1285I	CGRYCG	1 cut(s)	51
BshFI	GGCC	3 cut(s)	457, 474, 496
BsiEI	CGRYCG	1 cut(s)	51
BsiSI	CCGG	1 cut(s)	569
BslFI	GGGAC	2 cut(s)	161, 253
BslI	CCNNNNNNNGG	1 cut(s)	482
BsmAI	GTCTC	2 cut(s)	211, 248
BsmFI	GGGAC	2 cut(s)	161, 253
BsnI	GGCC	3 cut(s)	457, 474, 496
Bsp1286I	GDGCHC	1 cut(s)	355
Bsp143I	GATC	2 cut(s)	48, 378
BspACI	CCGC	2 cut(s)	189, 228
BspANI	GGCC	3 cut(s)	457, 474, 496
BspCNI	CTCAG	4 cut(s)	277, 395, 607, 619
BspFNI	CGCG	2 cut(s)	191, 193
BspLI	GGNNCC	1 cut(s)	276
BspQI	GCTCTTC	1 cut(s)	533
BsrBI	CCGCTC	1 cut(s)	230
BsrDI	GCAATG	1 cut(s)	639
BssECI	CCNNGG	3 cut(s)	270, 401, 693
BssHII	GCGCGC	1 cut(s)	191
BssMI	GATC	2 cut(s)	48, 378
BssNI	GRCGYC	1 cut(s)	406
Bst2UI	CCWGG	2 cut(s)	272, 694
Bst4CI	ACNGT	2 cut(s)	65, 590
Bst6I	CTCTTC	2 cut(s)	323, 533
BstACI	GRCGYC	1 cut(s)	406
BstC8I	GCNNGC	2 cut(s)	193, 455
BstDEI	CTNAG	4 cut(s)	264, 382, 615, 627
BstF5I	GGATG	1 cut(s)	688
BstFNI	CGCG	2 cut(s)	191, 193
BstHHI	GCGC	2 cut(s)	193, 195
BstKTI	GATC	2 cut(s)	51, 381
BstMAI	GTCTC	2 cut(s)	211, 248
BstMBI	GATC	2 cut(s)	48, 378
BstMCI	CGRYCG	1 cut(s)	51
BstNI	CCWGG	2 cut(s)	272, 694
BstSCI	CCNGG	2 cut(s)	270, 692
BstSLI	GKGCMC	1 cut(s)	355
BstUI	CGCG	2 cut(s)	191, 193
BstX2I	RGATCY	1 cut(s)	378
BstYI	RGATCY	1 cut(s)	378
BsuRI	GGCC	3 cut(s)	457, 474, 496
BtsCI	GGATG	1 cut(s)	688
BtsIMutI	CAGTG	1 cut(s)	595
Cac8I	GCNNGC	2 cut(s)	193, 455
CfoI	GCGC	2 cut(s)	193, 195
Cfr13I	GGNCC	1 cut(s)	473
CseI	GACGC	1 cut(s)	395
DdeI	CTNAG	4 cut(s)	264, 382, 615, 627
DpnI	GATC	2 cut(s)	50, 380
DpnII	GATC	2 cut(s)	48, 378
EaeI	YGGCCR	2 cut(s)	455, 494
Eam1104I	CTCTTC	2 cut(s)	323, 533
EarI	CTCTTC	2 cut(s)	323, 533
Eco57I	CTGAAG	1 cut(s)	304
EcoRII	CCWGG	2 cut(s)	270, 692
FaiI	YATR	1 cut(s)	709
FalI	AAGNNNNNCTT	2 cut(s)	494, 526
FaqI	GGGAC	2 cut(s)	161, 253
FblI	GTMKAC	1 cut(s)	445
FokI	GGATG	1 cut(s)	695
GlaI	GCGC	2 cut(s)	192, 194
GsaI	CCCAGC	1 cut(s)	282
GsuI	CTGGAG	2 cut(s)	413, 594
HaeIII	GGCC	3 cut(s)	457, 474, 496
HapII	CCGG	1 cut(s)	569
HgaI	GACGC	1 cut(s)	395
HhaI	GCGC	2 cut(s)	193, 195
Hin1I	GRCGYC	1 cut(s)	406
Hin6I	GCGC	2 cut(s)	191, 193
HinP1I	GCGC	2 cut(s)	191, 193
HincII	GTYRAC	1 cut(s)	446
HindII	GTYRAC	1 cut(s)	446
HinfI	GANTC	2 cut(s)	43, 565
HpaII	CCGG	1 cut(s)	569
HphI	GGTGA	2 cut(s)	178, 217
Hpy166II	GTNNAC	1 cut(s)	446
Hpy188I	TCNGA	3 cut(s)	48, 516, 675
Hpy188III	TCNNGA	3 cut(s)	31, 430, 596
Hpy8I	GTNNAC	1 cut(s)	446
Hpy99I	CGWCG	2 cut(s)	447, 450
HpyCH4III	ACNGT	2 cut(s)	65, 590
HpyCH4IV	ACGT	2 cut(s)	442, 448
HpyF3I	CTNAG	4 cut(s)	264, 382, 615, 627
HpySE526I	ACGT	2 cut(s)	442, 448
Hsp92I	GRCGYC	1 cut(s)	406
HspAI	GCGC	2 cut(s)	191, 193
Kzo9I	GATC	2 cut(s)	48, 378
LguI	GCTCTTC	1 cut(s)	533
LmnI	GCTCC	2 cut(s)	280, 287
MaeII	ACGT	2 cut(s)	442, 448
MalI	GATC	2 cut(s)	50, 380
MbiI	CCGCTC	1 cut(s)	230
MboI	GATC	2 cut(s)	48, 378
MboII	GAAGA	4 cut(s)	62, 310, 550, 613
MflI	RGATCY	1 cut(s)	378
MhlI	GDGCHC	1 cut(s)	355
MlsI	TGGCCA	2 cut(s)	457, 496
MluCI	AATT	6 cut(s)	16, 25, 53, 89, 126, 151
MluNI	TGGCCA	2 cut(s)	457, 496
MlyI	GAGTC	1 cut(s)	559
MnlI	CCTC	9 cut(s)	106, 171, 233, 320, 347, 366, 411, 435, 447
Mox20I	TGGCCA	2 cut(s)	457, 496
MscI	TGGCCA	2 cut(s)	457, 496
MseI	TTAA	1 cut(s)	522
Msp20I	TGGCCA	2 cut(s)	457, 496
MspA1I	CMGCKG	1 cut(s)	614
MspI	CCGG	1 cut(s)	569
MspR9I	CCNGG	2 cut(s)	272, 694
MvaI	CCWGG	2 cut(s)	272, 694
MvnI	CGCG	2 cut(s)	191, 193
NdeII	GATC	2 cut(s)	48, 378
NlaIV	GGNNCC	1 cut(s)	276
NmeAIII	GCCGAG	1 cut(s)	382
PauI	GCGCGC	1 cut(s)	191
PciSI	GCTCTTC	1 cut(s)	533
PfeI	GAWTC	1 cut(s)	43
Ple19I	CGATCG	1 cut(s)	51
PleI	GAGTC	1 cut(s)	559
PpsI	GAGTC	1 cut(s)	559
PshBI	ATTAAT	1 cut(s)	522
Psp6I	CCWGG	2 cut(s)	270, 692
PspFI	CCCAGC	1 cut(s)	278
PspGI	CCWGG	2 cut(s)	270, 692
PspN4I	GGNNCC	1 cut(s)	276
PspPI	GGNCC	1 cut(s)	473
PsuI	RGATCY	1 cut(s)	378
PteI	GCGCGC	1 cut(s)	191
PvuI	CGATCG	1 cut(s)	51
PvuII	CAGCTG	1 cut(s)	614
SalI	GTCGAC	1 cut(s)	444
SapI	GCTCTTC	1 cut(s)	533
SaqAI	TTAA	1 cut(s)	522
Sau3AI	GATC	2 cut(s)	48, 378
Sau96I	GGNCC	1 cut(s)	473
SchI	GAGTC	1 cut(s)	559
ScrFI	CCNGG	2 cut(s)	272, 694
SduI	GDGCHC	1 cut(s)	355
SgrDI	CGTCGACG	1 cut(s)	444
SmlI	CTYRAG	1 cut(s)	596
SmoI	CTYRAG	1 cut(s)	596
Sse9I	AATT	6 cut(s)	16, 25, 53, 89, 126, 151
SsiI	CCGC	2 cut(s)	189, 228
SspI	AATATT	1 cut(s)	520
StyD4I	CCNGG	2 cut(s)	270, 692
TaaI	ACNGT	2 cut(s)	65, 590
TaiI	ACGT	2 cut(s)	445, 451
TaqI	TCGA	3 cut(s)	51, 330, 445
TaqII	GACCGA	1 cut(s)	452
TasI	AATT	6 cut(s)	16, 25, 53, 89, 126, 151
TfiI	GAWTC	1 cut(s)	43
Tru1I	TTAA	1 cut(s)	522
Tru9I	TTAA	1 cut(s)	522
TscAI	CASTG	1 cut(s)	595
TspRI	CASTG	1 cut(s)	595
VspI	ATTAAT	1 cut(s)	522
XapI	RAATTY	3 cut(s)	16, 89, 126
XmiI	GTMKAC	1 cut(s)	445

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.