Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3C

Orthogroup ID

OG0001411

Physical Location & Seq

Genomic Coordinates Forward (+)

4400445 .. 4403704

Gene Structure 3260 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3CG064500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 945 bp

ATGTTGTCCATCCCTAACATCAGTGGCACAGTTATAGGGAATACTAGTAAAAAGATAAGAGGGACTGTGGTATTGAGGAAGAAGAATGCTTTGGACTTTAATGATTTGATTGCTTCAGTTGCTGATGGCGCGCTTGAGTTAGGAAATCGGAGTTCCAAGAGCGTTCTTGATCATCACACTGAATTTTATCTTGAGACTATCACACTCGAAGATGTTCTAGGTGAGGGCAGGATCCACTTTGTTTGCAACTCTTGGGTGTACCCTGCAGCCAAATACACAAAAGATCGCATTTTCTTTGTTAACAAGTCATATCTTCCAAGTGATACACCATTGCCACTACAAAGTTTCAGAGAAGACGAACTGGTAAACTTAAGAAGAGATGGGGAAGGAGAGCTCAAGGAATGGGACAGGGTTTATGACTATGCTTACTACAATGATCTCGGGGATCCAGATGAGGGCGAAGAATATGTTTGTCCTATTCTTGGAGGATCTAGAGTATACATACCCTTACCCTCGAAGAGGAAGAACTGGACGAGCACCGACAAAGACAGATTCAAACAGAGCGAGAATAGGTTGAACCTTCTTCTGAGCCTAAACATTTATGTTCTGAGAGATGAACGATTTGGCCACATGAAGTTGGCAGACTTTCTTACTTATGGTTTTAAATCCATAGCTCAGTTCGTTAGAAAAGAGCTTGAGGCTTTGTTTGATGATACTCCCAATGAGTTTGACAGCTTCGAAGATGATATTGGGGACAACATCCCAGTGGAGATGCTCAAGGAAATTCTACGAACCGATGGTGAAAATTTCCTCAGGTTCCGAGTGCCTCAAGTGATCAAAGAGGATAAGACTGCTTGGAGGACTGATGAAGAATTTGCCAGAGAAATGTTGGCTGGAGTTAACCCTGTCACCATTCAGTGTCTCCAACTAGATGGAGGATCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0008150 GO:0008152 GO:0016165 GO:0016491 GO:0016701 GO:0016702 GO:0044424 GO:0044464 GO:0051213 GO:0055114

KEGG Pathways

Metabolic & Signaling

ko00591 ko00592 ko01100 ko01110 map00591 map00592 map01100 map01110

Pfam Domains

Protein Families

Lipoxygenase PLAT

Protein Analysis

314

Amino Acids

36.08

Weight (kDa)

4.9

Isoelectric Point (pI)

35.86

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PLAT	PF01477	55 - 99	5.4e-09	PLAT/LH2 domain
Lipoxygenase	PF00305	113 - 309	1.7e-47	Lipoxygenase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001411)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0372821 RchiOBHm_Chr2g0120391 RchiOBHm_Chr3g0472751 RchiOBHm_Chr5g0036011 RchiOBHm_Chr6g0269661 RchiOBHm_Chr7g0231021
rosa_laevigata	RLG00000000534 RLG00000003816
rosa_multiflora	Rmu_sc0000084.1_g000050 Rmu_sc0001493.1_g000009 Rmu_sc0001851.1_g000026 Rmu_sc0003198.1_g000001 Rmu_sc0003198.1_g000002 Rmu_sc0004226.1_g000003 Rmu_sc0005738.1_g000004 Rmu_sc0006380.1_g000004 Rmu_sc0012041.1_g000003 Rmu_sc0017397.1_g000001
rosa_roxburghii	Rroxscaffold_4G00313360
rosa_rugosa	Rorug03G0325800 Rorug04G0073800 Rorug06G0052600
rosa_samantha	Rh1CG021400 Rh2CG235800 Rh2DG107900 Rh3AG180200 Rh3BG065800 Rh3BG206400 Rh3CG064500 Rh3CG203500 Rh3CG221800 Rh3CG270900 Rh3DG065700 Rh3DG132500 Rh3DG266800 Rh4AG242700 Rh4BG140300 Rh4BG140400 Rh4CG033900 Rh5AG093800 Rh5BG377400 Rh5BG426700 Rh5DG440600 Rh6AG048200 Rh6AG074100 Rh6AG148600 Rh6AG196800 Rh6AG406100 Rh7AG362100 Rh7BG138700 Rh7CG380700 Rh7DG335500
rosa_wichuraiana	Rw3G013510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	498
AccII	CGCG	1 cut(s)	131
AclWI	GGATC	5 cut(s)	226, 239, 440, 453, 496
AcoI	YGGCCR	1 cut(s)	625
AcsI	RAATTY	4 cut(s)	182, 783, 805, 872
AcuI	CTGAAG	1 cut(s)	99
AfaI	GTAC	1 cut(s)	260
AfiI	CCNNNNNNNGG	3 cut(s)	455, 482, 519
AflII	CTTAAG	1 cut(s)	370
AgsI	TTSAA	2 cut(s)	556, 577
AhlI	ACTAGT	1 cut(s)	44
AjuI	GAANNNNNNNTTGG	4 cut(s)	74, 106, 732, 764
AluBI	AGCT	4 cut(s)	394, 674, 694, 735
AluI	AGCT	4 cut(s)	394, 674, 694, 735
Alw21I	GWGCWC	2 cut(s)	396, 539
Alw26I	GTCTC	2 cut(s)	188, 926
AlwI	GGATC	5 cut(s)	226, 239, 440, 453, 496
AlwNI	CAGNNNCTG	1 cut(s)	122
Ama87I	CYCGRG	1 cut(s)	440
AoxI	GGCC	1 cut(s)	625
ApeKI	GCWGC	1 cut(s)	266
ApoI	RAATTY	4 cut(s)	182, 783, 805, 872
Asp700I	GAANNNNTTC	1 cut(s)	213
AspLEI	GCGC	2 cut(s)	131, 133
AsuHPI	GGTGA	3 cut(s)	233, 812, 901
AsuII	TTCGAA	1 cut(s)	738
AvaI	CYCGRG	1 cut(s)	440
AxyI	CCTNAGG	1 cut(s)	812
BalI	TGGCCA	1 cut(s)	627
BamHI	GGATCC	2 cut(s)	231, 445
BanII	GRGCYC	1 cut(s)	396
BbsI	GAAGAC	1 cut(s)	360
Bbv12I	GWGCWC	2 cut(s)	396, 539
BbvI	GCAGC	1 cut(s)	278
BccI	CCATC	5 cut(s)	17, 119, 374, 791, 926
BclI	TGATCA	2 cut(s)	169, 834
BcoDI	GTCTC	2 cut(s)	188, 926
BcuI	ACTAGT	1 cut(s)	44
BfaI	CTAG	4 cut(s)	45, 218, 492, 929
BfmI	CTRYAG	1 cut(s)	264
BfrI	CTTAAG	1 cut(s)	370
BisI	GCNGC	1 cut(s)	267
BlsI	GCNGC	1 cut(s)	268
BmeT110I	CYCGRG	1 cut(s)	440
BmiI	GGNNCC	3 cut(s)	233, 447, 818
BmrI	ACTGGG	1 cut(s)	758
BmsI	GCATC	1 cut(s)	762
BmuI	ACTGGG	1 cut(s)	758
BpiI	GAAGAC	1 cut(s)	360
BpmI	CTGGAG	1 cut(s)	915
Bpu14I	TTCGAA	1 cut(s)	738
BpuEI	CTTGAG	6 cut(s)	155, 212, 380, 716, 761, 813
Bsc4I	CCNNNNNNNGG	3 cut(s)	455, 482, 519
Bse1I	ACTGG	3 cut(s)	366, 533, 764
Bse21I	CCTNAGG	1 cut(s)	812
Bse3DI	GCAATG	1 cut(s)	329
BseGI	GGATG	2 cut(s)	9, 759
BseLI	CCNNNNNNNGG	3 cut(s)	455, 482, 519
BseMI	GCAATG	1 cut(s)	329
BseMII	CTCAG	4 cut(s)	578, 599, 689, 826
BseNI	ACTGG	3 cut(s)	366, 533, 764
BsePI	GCGCGC	1 cut(s)	129
BseXI	GCAGC	1 cut(s)	278
Bsh1236I	CGCG	1 cut(s)	131
BshFI	GGCC	1 cut(s)	627
BsiHKAI	GWGCWC	2 cut(s)	396, 539
BsiHKCI	CYCGRG	1 cut(s)	440
BslFI	GGGAC	3 cut(s)	76, 419, 767
BslI	CCNNNNNNNGG	3 cut(s)	455, 482, 519
BsmAI	GTCTC	2 cut(s)	188, 926
BsmFI	GGGAC	3 cut(s)	76, 419, 767
BsmI	GAATGC	1 cut(s)	91
BsnI	GGCC	1 cut(s)	627
BsoBI	CYCGRG	1 cut(s)	440
Bsp119I	TTCGAA	1 cut(s)	738
Bsp1286I	GDGCHC	2 cut(s)	396, 539
Bsp143I	GATC	8 cut(s)	169, 231, 283, 436, 445, 488, 834, 938
BspANI	GGCC	1 cut(s)	627
BspCNI	CTCAG	4 cut(s)	579, 600, 688, 825
BspFNI	CGCG	1 cut(s)	131
BspHI	TCATGA	1 cut(s)	941
BspLI	GGNNCC	3 cut(s)	233, 447, 818
BspMAI	CTGCAG	1 cut(s)	268
BspPI	GGATC	5 cut(s)	226, 239, 440, 453, 496
BspT104I	TTCGAA	1 cut(s)	738
BspTI	CTTAAG	1 cut(s)	370
BsrDI	GCAATG	1 cut(s)	329
BsrI	ACTGG	3 cut(s)	366, 533, 764
BssHII	GCGCGC	1 cut(s)	129
BssMI	GATC	8 cut(s)	169, 231, 283, 436, 445, 488, 834, 938
BssNAI	GTATAC	1 cut(s)	499
Bst1107I	GTATAC	1 cut(s)	499
Bst4CI	ACNGT	2 cut(s)	31, 67
Bst6I	CTCTTC	2 cut(s)	370, 512
BstAFI	CTTAAG	1 cut(s)	370
BstBI	TTCGAA	1 cut(s)	738
BstC8I	GCNNGC	1 cut(s)	131
BstDEI	CTNAG	4 cut(s)	587, 608, 675, 812
BstENI	CCTNNNNNAGG	1 cut(s)	517
BstF5I	GGATG	2 cut(s)	9, 759
BstFNI	CGCG	1 cut(s)	131
BstHHI	GCGC	2 cut(s)	131, 133
BstKTI	GATC	8 cut(s)	172, 234, 286, 439, 448, 491, 837, 941
BstMAI	GTCTC	2 cut(s)	188, 926
BstMBI	GATC	8 cut(s)	169, 231, 283, 436, 445, 488, 834, 938
BstMWI	GCNNNNNNNGC	2 cut(s)	119, 128
BstSFI	CTRYAG	1 cut(s)	264
BstUI	CGCG	1 cut(s)	131
BstV1I	GCAGC	1 cut(s)	278
BstV2I	GAAGAC	1 cut(s)	360
BstX2I	RGATCY	3 cut(s)	231, 445, 488
BstXI	CCANNNNNNTGG	1 cut(s)	932
BstYI	RGATCY	3 cut(s)	231, 445, 488
BstZ17I	GTATAC	1 cut(s)	499
Bsu36I	CCTNAGG	1 cut(s)	812
BsuRI	GGCC	1 cut(s)	627
BtsCI	GGATG	2 cut(s)	9, 759
BtsIMutI	CAGTG	4 cut(s)	28, 177, 771, 923
Cac8I	GCNNGC	1 cut(s)	131
CaiI	CAGNNNCTG	1 cut(s)	122
CciI	TCATGA	1 cut(s)	941
CfoI	GCGC	2 cut(s)	131, 133
Csp6I	GTAC	1 cut(s)	259
CspCI	CAANNNNNGTGG	2 cut(s)	224, 259
CviAII	CATG	2 cut(s)	631, 942
CviJI	RGCY	9 cut(s)	269, 394, 591, 627, 674, 694, 701, 735, 893
CviKI_1	RGCY	9 cut(s)	269, 394, 591, 627, 674, 694, 701, 735, 893
CviQI	GTAC	1 cut(s)	259
DdeI	CTNAG	4 cut(s)	587, 608, 675, 812
DpnI	GATC	8 cut(s)	171, 233, 285, 438, 447, 490, 836, 940
DpnII	GATC	8 cut(s)	169, 231, 283, 436, 445, 488, 834, 938
DraI	TTTAAA	1 cut(s)	664
EaeI	YGGCCR	1 cut(s)	625
Eam1104I	CTCTTC	2 cut(s)	370, 512
EarI	CTCTTC	2 cut(s)	370, 512
Ecl136II	GAGCTC	1 cut(s)	394
Eco24I	GRGCYC	1 cut(s)	396
Eco53kI	GAGCTC	1 cut(s)	394
Eco57I	CTGAAG	1 cut(s)	99
Eco81I	CCTNAGG	1 cut(s)	812
Eco88I	CYCGRG	1 cut(s)	440
EcoICRI	GAGCTC	1 cut(s)	394
EcoNI	CCTNNNNNAGG	1 cut(s)	517
EcoT38I	GRGCYC	1 cut(s)	396
FaeI	CATG	2 cut(s)	634, 945
FaqI	GGGAC	3 cut(s)	76, 419, 767
FatI	CATG	2 cut(s)	630, 941
FbaI	TGATCA	2 cut(s)	169, 834
FblI	GTMKAC	1 cut(s)	498
Fnu4HI	GCNGC	1 cut(s)	267
FokI	GGATG	1 cut(s)	746
FriOI	GRGCYC	1 cut(s)	396
Fsp4HI	GCNGC	1 cut(s)	267
FspBI	CTAG	4 cut(s)	45, 218, 492, 929
GlaI	GCGC	2 cut(s)	130, 132
GluI	GCNGC	1 cut(s)	267
GsuI	CTGGAG	1 cut(s)	915
HaeIII	GGCC	1 cut(s)	627
HhaI	GCGC	2 cut(s)	131, 133
Hin1II	CATG	2 cut(s)	634, 945
Hin6I	GCGC	2 cut(s)	129, 131
HinP1I	GCGC	2 cut(s)	129, 131
HincII	GTYRAC	2 cut(s)	301, 901
HindII	GTYRAC	2 cut(s)	301, 901
HinfI	GANTC	1 cut(s)	552
HpaI	GTTAAC	2 cut(s)	301, 901
HphI	GGTGA	3 cut(s)	233, 812, 901
Hpy166II	GTNNAC	5 cut(s)	259, 301, 367, 499, 901
Hpy188I	TCNGA	5 cut(s)	150, 350, 588, 609, 821
Hpy188III	TCNNGA	5 cut(s)	167, 191, 449, 492, 942
Hpy8I	GTNNAC	5 cut(s)	259, 301, 367, 499, 901
HpyAV	CCTTC	2 cut(s)	380, 590
HpyCH4III	ACNGT	2 cut(s)	31, 67
HpyCH4V	TGCA	2 cut(s)	246, 266
HpyF10VI	GCNNNNNNNGC	2 cut(s)	119, 128
HpyF3I	CTNAG	4 cut(s)	587, 608, 675, 812
Hsp92II	CATG	2 cut(s)	634, 945
HspAI	GCGC	2 cut(s)	129, 131
Ksp22I	TGATCA	2 cut(s)	169, 834
KspAI	GTTAAC	2 cut(s)	301, 901
Kzo9I	GATC	8 cut(s)	169, 231, 283, 436, 445, 488, 834, 938
Lsp1109I	GCAGC	1 cut(s)	278
LweI	GCATC	1 cut(s)	762
MaeI	CTAG	4 cut(s)	45, 218, 492, 929
MaeIII	GTNAC	1 cut(s)	907
MalI	GATC	8 cut(s)	171, 233, 285, 438, 447, 490, 836, 940
MboI	GATC	8 cut(s)	169, 231, 283, 436, 445, 488, 834, 938
MflI	RGATCY	3 cut(s)	231, 445, 488
MhlI	GDGCHC	2 cut(s)	396, 539
MlsI	TGGCCA	1 cut(s)	627
MluCI	AATT	4 cut(s)	182, 783, 805, 872
MluNI	TGGCCA	1 cut(s)	627
Mox20I	TGGCCA	1 cut(s)	627
MroXI	GAANNNNTTC	1 cut(s)	213
MscI	TGGCCA	1 cut(s)	627
MseI	TTAA	5 cut(s)	99, 300, 371, 663, 900
MslI	CAYNNNNRTG	1 cut(s)	764
Msp20I	TGGCCA	1 cut(s)	627
MspCI	CTTAAG	1 cut(s)	370
Mva1269I	GAATGC	1 cut(s)	91
MvnI	CGCG	1 cut(s)	131
MwoI	GCNNNNNNNGC	2 cut(s)	119, 128
NdeII	GATC	8 cut(s)	169, 231, 283, 436, 445, 488, 834, 938
NlaIII	CATG	2 cut(s)	634, 945
NlaIV	GGNNCC	3 cut(s)	233, 447, 818
NmuCI	GTSAC	1 cut(s)	907
NspV	TTCGAA	1 cut(s)	738
PagI	TCATGA	1 cut(s)	941
PauI	GCGCGC	1 cut(s)	129
PctI	GAATGC	1 cut(s)	91
PdmI	GAANNNNTTC	1 cut(s)	213
PfeI	GAWTC	1 cut(s)	552
PkrI	GCNGC	1 cut(s)	268
Psp124BI	GAGCTC	1 cut(s)	396
PspN4I	GGNNCC	3 cut(s)	233, 447, 818
PstI	CTGCAG	1 cut(s)	268
PstNI	CAGNNNCTG	1 cut(s)	122
PsuI	RGATCY	3 cut(s)	231, 445, 488
PteI	GCGCGC	1 cut(s)	129
RsaI	GTAC	1 cut(s)	260
RsaNI	GTAC	1 cut(s)	259
RseI	CAYNNNNRTG	1 cut(s)	764
SacI	GAGCTC	1 cut(s)	396
SaqAI	TTAA	5 cut(s)	99, 300, 371, 663, 900
SatI	GCNGC	1 cut(s)	267
Sau3AI	GATC	8 cut(s)	169, 231, 283, 436, 445, 488, 834, 938
SduI	GDGCHC	2 cut(s)	396, 539
SetI	ASST	8 cut(s)	223, 396, 575, 582, 676, 696, 737, 818
SfaNI	GCATC	1 cut(s)	762
SfcI	CTRYAG	1 cut(s)	264
SfuI	TTCGAA	1 cut(s)	738
SmiMI	CAYNNNNRTG	1 cut(s)	764
SmlI	CTYRAG	7 cut(s)	134, 191, 370, 395, 695, 776, 828
SmoI	CTYRAG	7 cut(s)	134, 191, 370, 395, 695, 776, 828
SpeI	ACTAGT	1 cut(s)	44
Sse9I	AATT	4 cut(s)	182, 783, 805, 872
SspMI	CTAG	4 cut(s)	45, 218, 492, 929
SstI	GAGCTC	1 cut(s)	396
TaaI	ACNGT	2 cut(s)	31, 67
TaqI	TCGA	3 cut(s)	207, 515, 738
TasI	AATT	4 cut(s)	182, 783, 805, 872
TfiI	GAWTC	1 cut(s)	552
Tru1I	TTAA	5 cut(s)	99, 300, 371, 663, 900
Tru9I	TTAA	5 cut(s)	99, 300, 371, 663, 900
TscAI	CASTG	4 cut(s)	28, 184, 771, 923
TseFI	GTSAC	1 cut(s)	907
TseI	GCWGC	1 cut(s)	266
Tsp45I	GTSAC	1 cut(s)	907
TspDTI	ATGAA	3 cut(s)	630, 647, 882
TspRI	CASTG	4 cut(s)	28, 184, 771, 923
Vha464I	CTTAAG	1 cut(s)	370
XagI	CCTNNNNNAGG	1 cut(s)	517
XapI	RAATTY	4 cut(s)	182, 783, 805, 872
XbaI	TCTAGA	1 cut(s)	491
XcmI	CCANNNNNNNNNTGG	1 cut(s)	886
XmiI	GTMKAC	1 cut(s)	498
XmnI	GAANNNNTTC	1 cut(s)	213
XspI	CTAG	4 cut(s)	45, 218, 492, 929

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.