Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000084.1

Orthogroup ID

OG0001411

Physical Location & Seq

Genomic Coordinates Forward (+)

210097 .. 210515

Gene Structure 419 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000084.1_g000050.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 327 bp

atgatcagccaagcagttcatcacaaccttctccggctttatgggttttgcatcactccaacagaaagacttctagtttacccatacatgtccaatggcagtgtggattctcgtgtcaaagggaaaccaatgttggattggggaactaggaaacagattgcctttggagctgcaagaggattgttataccttcatgagcagggtgacccaaaaattatccacagggatgtgaaggtagcaaatgtacttcttgatgactactgtgaagccgtggtcagagattttgatttggcaaagcttttggatcaccaagtgttctgtggttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002252 GO:0002376 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008104 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009615 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0031974 GO:0031981 GO:0033036 GO:0033365 GO:0034504 GO:0034613 GO:0036211 GO:0038023 GO:0040008 GO:0040014 GO:0040015 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045926 GO:0046777 GO:0048519 GO:0048638 GO:0048640 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051093 GO:0051179 GO:0051239 GO:0051241 GO:0051607 GO:0051641 GO:0051704 GO:0051707 GO:0051716 GO:0060089 GO:0065007 GO:0070013 GO:0070727 GO:0071704 GO:0071944 GO:0098542 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_4 LRR_8 Pkinase Pkinase_Tyr

Protein Analysis

108

Amino Acids

12.27

Weight (kDa)

7.77

Isoelectric Point (pI)

21.71

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001411)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0372821 RchiOBHm_Chr2g0120391 RchiOBHm_Chr3g0472751 RchiOBHm_Chr5g0036011 RchiOBHm_Chr6g0269661 RchiOBHm_Chr7g0231021
rosa_laevigata	RLG00000000534 RLG00000003816
rosa_multiflora	Rmu_sc0000084.1_g000050 Rmu_sc0001493.1_g000009 Rmu_sc0001851.1_g000026 Rmu_sc0003198.1_g000001 Rmu_sc0003198.1_g000002 Rmu_sc0004226.1_g000003 Rmu_sc0005738.1_g000004 Rmu_sc0006380.1_g000004 Rmu_sc0012041.1_g000003 Rmu_sc0017397.1_g000001
rosa_roxburghii	Rroxscaffold_4G00313360
rosa_rugosa	Rorug03G0325800 Rorug04G0073800 Rorug06G0052600
rosa_samantha	Rh1CG021400 Rh2CG235800 Rh2DG107900 Rh3AG180200 Rh3BG065800 Rh3BG206400 Rh3CG064500 Rh3CG203500 Rh3CG221800 Rh3CG270900 Rh3DG065700 Rh3DG132500 Rh3DG266800 Rh4AG242700 Rh4BG140300 Rh4BG140400 Rh4CG033900 Rh5AG093800 Rh5BG377400 Rh5BG426700 Rh5DG440600 Rh6AG048200 Rh6AG074100 Rh6AG148600 Rh6AG196800 Rh6AG406100 Rh7AG362100 Rh7BG138700 Rh7CG380700 Rh7DG335500
rosa_wichuraiana	Rw3G013510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	312
AdeI	CACNNNGTG	1 cut(s)	313
AfaI	GTAC	1 cut(s)	246
AflIII	ACRYGT	1 cut(s)	87
AjuI	GAANNNNNNNTTGG	2 cut(s)	116, 148
AluBI	AGCT	2 cut(s)	170, 298
AluI	AGCT	2 cut(s)	170, 298
AlwI	GGATC	1 cut(s)	312
ApeKI	GCWGC	1 cut(s)	170
Asp700I	GAANNNNTTC	1 cut(s)	69
AsuHPI	GGTGA	2 cut(s)	215, 299
BauI	CACGAG	1 cut(s)	111
BbvI	GCAGC	1 cut(s)	157
BceAI	ACGGC	1 cut(s)	254
BclI	TGATCA	1 cut(s)	3
BfaI	CTAG	2 cut(s)	74, 147
BisI	GCNGC	1 cut(s)	171
BlsI	GCNGC	1 cut(s)	172
BmsI	GCATC	1 cut(s)	60
BsaJI	CCNNGG	1 cut(s)	270
BseDI	CCNNGG	1 cut(s)	270
BseGI	GGATG	1 cut(s)	232
BseXI	GCAGC	1 cut(s)	157
BsiSI	CCGG	1 cut(s)	34
Bsp143I	GATC	2 cut(s)	3, 304
BspHI	TCATGA	1 cut(s)	193
BspPI	GGATC	1 cut(s)	312
BssECI	CCNNGG	1 cut(s)	270
BssMI	GATC	2 cut(s)	3, 304
BssSI	CACGAG	1 cut(s)	111
Bst2BI	CACGAG	1 cut(s)	111
Bst4CI	ACNGT	1 cut(s)	263
BstDSI	CCRYGG	1 cut(s)	270
BstEII	GGTNACC	1 cut(s)	203
BstF5I	GGATG	1 cut(s)	232
BstKTI	GATC	2 cut(s)	6, 307
BstMBI	GATC	2 cut(s)	3, 304
BstMWI	GCNNNNNNNGC	1 cut(s)	167
BstNSI	RCATGY	1 cut(s)	91
BstPI	GGTNACC	1 cut(s)	203
BstV1I	GCAGC	1 cut(s)	157
BtgI	CCRYGG	1 cut(s)	270
BtsCI	GGATG	1 cut(s)	232
BtsI	GCAGTG	1 cut(s)	106
BtsIMutI	CAGTG	1 cut(s)	106
CciI	TCATGA	1 cut(s)	193
Csp6I	GTAC	1 cut(s)	245
CviAII	CATG	2 cut(s)	88, 194
CviJI	RGCY	5 cut(s)	9, 37, 170, 269, 298
CviKI_1	RGCY	5 cut(s)	9, 37, 170, 269, 298
CviQI	GTAC	1 cut(s)	245
DpnI	GATC	2 cut(s)	5, 306
DpnII	GATC	2 cut(s)	3, 304
DraIII	CACNNNGTG	1 cut(s)	313
Eco91I	GGTNACC	1 cut(s)	203
EcoO65I	GGTNACC	1 cut(s)	203
FaeI	CATG	2 cut(s)	91, 197
FaiI	YATR	5 cut(s)	42, 85, 89, 187, 195
FatI	CATG	2 cut(s)	87, 193
FbaI	TGATCA	1 cut(s)	3
Fnu4HI	GCNGC	1 cut(s)	171
FokI	GGATG	1 cut(s)	239
Fsp4HI	GCNGC	1 cut(s)	171
FspBI	CTAG	2 cut(s)	74, 147
GluI	GCNGC	1 cut(s)	171
HapII	CCGG	1 cut(s)	34
Hin1II	CATG	2 cut(s)	91, 197
HindIII	AAGCTT	1 cut(s)	296
HinfI	GANTC	1 cut(s)	107
HpaII	CCGG	1 cut(s)	34
HphI	GGTGA	2 cut(s)	215, 299
Hpy166II	GTNNAC	1 cut(s)	79
Hpy188I	TCNGA	1 cut(s)	278
Hpy188III	TCNNGA	2 cut(s)	194, 251
Hpy8I	GTNNAC	1 cut(s)	79
HpyAV	CCTTC	3 cut(s)	38, 200, 226
HpyCH4III	ACNGT	1 cut(s)	263
HpyCH4V	TGCA	2 cut(s)	51, 173
HpyF10VI	GCNNNNNNNGC	1 cut(s)	167
Hsp92II	CATG	2 cut(s)	91, 197
Ksp22I	TGATCA	1 cut(s)	3
Kzo9I	GATC	2 cut(s)	3, 304
LmnI	GCTCC	1 cut(s)	167
LpnPI	CCDG	3 cut(s)	47, 185, 208
Lsp1109I	GCAGC	1 cut(s)	157
LweI	GCATC	1 cut(s)	60
MaeI	CTAG	2 cut(s)	74, 147
MaeIII	GTNAC	1 cut(s)	203
MalI	GATC	2 cut(s)	5, 306
MboI	GATC	2 cut(s)	3, 304
MluCI	AATT	1 cut(s)	213
MmeI	TCCRAC	2 cut(s)	83, 114
MnlI	CCTC	1 cut(s)	170
MroXI	GAANNNNTTC	1 cut(s)	69
MseI	TTAA	1 cut(s)	325
MslI	CAYNNNNRTG	1 cut(s)	225
MspI	CCGG	1 cut(s)	34
MwoI	GCNNNNNNNGC	1 cut(s)	167
NdeII	GATC	2 cut(s)	3, 304
NlaIII	CATG	2 cut(s)	91, 197
NmuCI	GTSAC	1 cut(s)	203
NspI	RCATGY	1 cut(s)	91
PagI	TCATGA	1 cut(s)	193
PciI	ACATGT	1 cut(s)	87
PdmI	GAANNNNTTC	1 cut(s)	69
PfeI	GAWTC	1 cut(s)	107
PkrI	GCNGC	1 cut(s)	172
PscI	ACATGT	1 cut(s)	87
PspEI	GGTNACC	1 cut(s)	203
RsaI	GTAC	1 cut(s)	246
RsaNI	GTAC	1 cut(s)	245
RseI	CAYNNNNRTG	1 cut(s)	225
SaqAI	TTAA	1 cut(s)	325
SatI	GCNGC	1 cut(s)	171
Sau3AI	GATC	2 cut(s)	3, 304
SetI	ASST	5 cut(s)	30, 172, 192, 237, 300
SfaNI	GCATC	1 cut(s)	60
SmiMI	CAYNNNNRTG	1 cut(s)	225
Sse9I	AATT	1 cut(s)	213
SspMI	CTAG	2 cut(s)	74, 147
TaaI	ACNGT	1 cut(s)	263
TasI	AATT	1 cut(s)	213
TatI	WGTACW	1 cut(s)	244
TfiI	GAWTC	1 cut(s)	107
Tru1I	TTAA	1 cut(s)	325
Tru9I	TTAA	1 cut(s)	325
TscAI	CASTG	1 cut(s)	106
TseFI	GTSAC	1 cut(s)	203
TseI	GCWGC	1 cut(s)	170
Tsp45I	GTSAC	1 cut(s)	203
TspDTI	ATGAA	2 cut(s)	8, 182
TspRI	CASTG	1 cut(s)	106
XceI	RCATGY	1 cut(s)	91
XcmI	CCANNNNNNNNNTGG	3 cut(s)	100, 135, 317
XmnI	GAANNNNTTC	1 cut(s)	69
XspI	CTAG	2 cut(s)	74, 147

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.