Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001493.1

Orthogroup ID

OG0001411

Physical Location & Seq

Genomic Coordinates Reverse (-)

37393 .. 38204

Gene Structure 812 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001493.1_g000009.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 546 bp

atgcctctgcctgattgttcttggatttggagtagttatgacaagcatcatgaagaaatttcgctcgggaacttgaagagatttcatttaagagaacttcaaattgcaacaaataacttcagcaacaagtacctactaagaaagggaggctttggacatgtttacaaaggaactatctgcgatgacactgtcgtagcagtcaagagacttaaagatggcagtgctcttggtggagagattcaattccagactgaagttgaaatgatcagcctagcagttcatcgcaaccttctccggctttatgggttttgcttgcatcactccaatagaaagacttctaggaaaccagtgttggattggggaactaggaaacggattgcctttggagctgcaagaggattgttataccttcatgagcagggtggcccgaaaattatccacaaggatgtgaaggtagcaaatgtacttcttgatgattactgtgaagccgtggtcagagattttgatttggcaaagcttttggatcgccaagtgttatgtggttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002252 GO:0002376 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008104 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009615 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0031974 GO:0031981 GO:0033036 GO:0033365 GO:0034504 GO:0034613 GO:0036211 GO:0038023 GO:0040008 GO:0040014 GO:0040015 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045926 GO:0046777 GO:0048519 GO:0048638 GO:0048640 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051093 GO:0051179 GO:0051239 GO:0051241 GO:0051607 GO:0051641 GO:0051704 GO:0051707 GO:0051716 GO:0060089 GO:0065007 GO:0070013 GO:0070727 GO:0071704 GO:0071944 GO:0098542 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_4 LRR_8 Pkinase Pkinase_Tyr

Protein Analysis

181

Amino Acids

20.64

Weight (kDa)

9.22

Isoelectric Point (pI)

31.01

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001411)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0372821 RchiOBHm_Chr2g0120391 RchiOBHm_Chr3g0472751 RchiOBHm_Chr5g0036011 RchiOBHm_Chr6g0269661 RchiOBHm_Chr7g0231021
rosa_laevigata	RLG00000000534 RLG00000003816
rosa_multiflora	Rmu_sc0000084.1_g000050 Rmu_sc0001493.1_g000009 Rmu_sc0001851.1_g000026 Rmu_sc0003198.1_g000001 Rmu_sc0003198.1_g000002 Rmu_sc0004226.1_g000003 Rmu_sc0005738.1_g000004 Rmu_sc0006380.1_g000004 Rmu_sc0012041.1_g000003 Rmu_sc0017397.1_g000001
rosa_roxburghii	Rroxscaffold_4G00313360
rosa_rugosa	Rorug03G0325800 Rorug04G0073800 Rorug06G0052600
rosa_samantha	Rh1CG021400 Rh2CG235800 Rh2DG107900 Rh3AG180200 Rh3BG065800 Rh3BG206400 Rh3CG064500 Rh3CG203500 Rh3CG221800 Rh3CG270900 Rh3DG065700 Rh3DG132500 Rh3DG266800 Rh4AG242700 Rh4BG140300 Rh4BG140400 Rh4CG033900 Rh5AG093800 Rh5BG377400 Rh5BG426700 Rh5DG440600 Rh6AG048200 Rh6AG074100 Rh6AG148600 Rh6AG196800 Rh6AG406100 Rh7AG362100 Rh7BG138700 Rh7CG380700 Rh7DG335500
rosa_wichuraiana	Rw3G013510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	531
AcsI	RAATTY	1 cut(s)	57
AcuI	CTGAAG	2 cut(s)	103, 273
AfaI	GTAC	2 cut(s)	131, 465
AflIII	ACRYGT	1 cut(s)	157
AgsI	TTSAA	4 cut(s)	76, 101, 242, 260
AjuI	GAANNNNNNNTTGG	2 cut(s)	335, 367
AluBI	AGCT	2 cut(s)	389, 517
AluI	AGCT	2 cut(s)	389, 517
Alw21I	GWGCWC	1 cut(s)	226
Alw26I	GTCTC	1 cut(s)	199
AlwI	GGATC	1 cut(s)	531
Ama87I	CYCGRG	1 cut(s)	65
AoxI	GGCC	1 cut(s)	424
ApeKI	GCWGC	1 cut(s)	389
ApoI	RAATTY	1 cut(s)	57
Asp700I	GAANNNNTTC	1 cut(s)	334
AspS9I	GGNCC	1 cut(s)	425
AvaI	CYCGRG	1 cut(s)	65
Bbv12I	GWGCWC	1 cut(s)	226
BbvI	GCAGC	1 cut(s)	376
BccI	CCATC	1 cut(s)	209
BceAI	ACGGC	1 cut(s)	473
BclI	TGATCA	1 cut(s)	264
BcoDI	GTCTC	1 cut(s)	199
BfaI	CTAG	3 cut(s)	272, 339, 366
BisI	GCNGC	1 cut(s)	390
BlsI	GCNGC	1 cut(s)	391
BmeT110I	CYCGRG	1 cut(s)	65
BmgT120I	GGNCC	1 cut(s)	425
BmsI	GCATC	2 cut(s)	55, 325
BsaJI	CCNNGG	1 cut(s)	489
Bse1I	ACTGG	1 cut(s)	347
BseDI	CCNNGG	1 cut(s)	489
BseGI	GGATG	1 cut(s)	451
BseNI	ACTGG	1 cut(s)	347
BseXI	GCAGC	1 cut(s)	376
BshFI	GGCC	1 cut(s)	426
BsiHKAI	GWGCWC	1 cut(s)	226
BsiHKCI	CYCGRG	1 cut(s)	65
BsiSI	CCGG	1 cut(s)	295
BsmAI	GTCTC	1 cut(s)	199
BsnI	GGCC	1 cut(s)	426
BsoBI	CYCGRG	1 cut(s)	65
Bsp1286I	GDGCHC	1 cut(s)	226
Bsp143I	GATC	2 cut(s)	264, 523
BspANI	GGCC	1 cut(s)	426
BspHI	TCATGA	2 cut(s)	49, 412
BspPI	GGATC	1 cut(s)	531
BsrI	ACTGG	1 cut(s)	347
BssECI	CCNNGG	1 cut(s)	489
BssMI	GATC	2 cut(s)	264, 523
Bst4CI	ACNGT	2 cut(s)	190, 482
Bst6I	CTCTTC	1 cut(s)	71
BstC8I	GCNNGC	1 cut(s)	314
BstDEI	CTNAG	1 cut(s)	137
BstDSI	CCRYGG	1 cut(s)	489
BstF5I	GGATG	1 cut(s)	451
BstKTI	GATC	2 cut(s)	267, 526
BstMAI	GTCTC	1 cut(s)	199
BstMBI	GATC	2 cut(s)	264, 523
BstMWI	GCNNNNNNNGC	1 cut(s)	386
BstNSI	RCATGY	1 cut(s)	161
BstV1I	GCAGC	1 cut(s)	376
BsuRI	GGCC	1 cut(s)	426
BtgI	CCRYGG	1 cut(s)	489
BtgZI	GCGATG	2 cut(s)	195, 266
BtsCI	GGATG	1 cut(s)	451
BtsI	GCAGTG	1 cut(s)	226
BtsIMutI	CAGTG	3 cut(s)	186, 226, 354
Cac8I	GCNNGC	1 cut(s)	314
CciI	TCATGA	2 cut(s)	49, 412
Cfr13I	GGNCC	1 cut(s)	425
Csp6I	GTAC	2 cut(s)	130, 464
CviAII	CATG	3 cut(s)	50, 158, 413
CviJI	RGCY	7 cut(s)	150, 270, 298, 389, 426, 488, 517
CviKI_1	RGCY	7 cut(s)	150, 270, 298, 389, 426, 488, 517
CviQI	GTAC	2 cut(s)	130, 464
DdeI	CTNAG	1 cut(s)	137
DpnI	GATC	2 cut(s)	266, 525
DpnII	GATC	2 cut(s)	264, 523
Eam1104I	CTCTTC	1 cut(s)	71
EarI	CTCTTC	1 cut(s)	71
Eco57I	CTGAAG	2 cut(s)	103, 273
Eco88I	CYCGRG	1 cut(s)	65
FaeI	CATG	3 cut(s)	53, 161, 416
FaiI	YATR	7 cut(s)	39, 51, 159, 303, 406, 414, 538
FalI	AAGNNNNNCTT	2 cut(s)	134, 166
FatI	CATG	3 cut(s)	49, 157, 412
FbaI	TGATCA	1 cut(s)	264
Fnu4HI	GCNGC	1 cut(s)	390
FokI	GGATG	1 cut(s)	458
Fsp4HI	GCNGC	1 cut(s)	390
FspBI	CTAG	3 cut(s)	272, 339, 366
GluI	GCNGC	1 cut(s)	390
HaeIII	GGCC	1 cut(s)	426
HapII	CCGG	1 cut(s)	295
Hin1II	CATG	3 cut(s)	53, 161, 416
HindIII	AAGCTT	1 cut(s)	515
HinfI	GANTC	1 cut(s)	238
HpaII	CCGG	1 cut(s)	295
Hpy166II	GTNNAC	1 cut(s)	163
Hpy188I	TCNGA	1 cut(s)	497
Hpy188III	TCNNGA	6 cut(s)	50, 67, 202, 247, 413, 470
Hpy8I	GTNNAC	1 cut(s)	163
HpyAV	CCTTC	3 cut(s)	299, 419, 445
HpyCH4III	ACNGT	2 cut(s)	190, 482
HpyCH4V	TGCA	3 cut(s)	107, 316, 392
HpyF10VI	GCNNNNNNNGC	1 cut(s)	386
HpyF3I	CTNAG	1 cut(s)	137
Hsp92II	CATG	3 cut(s)	53, 161, 416
Ksp22I	TGATCA	1 cut(s)	264
Kzo9I	GATC	2 cut(s)	264, 523
LmnI	GCTCC	1 cut(s)	386
LpnPI	CCDG	5 cut(s)	24, 260, 308, 360, 404
Lsp1109I	GCAGC	1 cut(s)	376
LweI	GCATC	2 cut(s)	55, 325
MaeI	CTAG	3 cut(s)	272, 339, 366
MalI	GATC	2 cut(s)	266, 525
MboI	GATC	2 cut(s)	264, 523
MboII	GAAGA	2 cut(s)	65, 88
MhlI	GDGCHC	1 cut(s)	226
MluCI	AATT	4 cut(s)	57, 102, 242, 432
MmeI	TCCRAC	1 cut(s)	333
MnlI	CCTC	3 cut(s)	15, 140, 389
MroXI	GAANNNNTTC	1 cut(s)	334
MseI	TTAA	3 cut(s)	89, 210, 544
MslI	CAYNNNNRTG	1 cut(s)	444
MspI	CCGG	1 cut(s)	295
MwoI	GCNNNNNNNGC	1 cut(s)	386
NdeII	GATC	2 cut(s)	264, 523
NlaIII	CATG	3 cut(s)	53, 161, 416
NspI	RCATGY	1 cut(s)	161
PagI	TCATGA	2 cut(s)	49, 412
PciI	ACATGT	1 cut(s)	157
PdmI	GAANNNNTTC	1 cut(s)	334
PfeI	GAWTC	1 cut(s)	238
PflFI	GACNNNGTC	1 cut(s)	188
PkrI	GCNGC	1 cut(s)	391
PscI	ACATGT	1 cut(s)	157
PspPI	GGNCC	1 cut(s)	425
PsyI	GACNNNGTC	1 cut(s)	188
RsaI	GTAC	2 cut(s)	131, 465
RsaNI	GTAC	2 cut(s)	130, 464
RseI	CAYNNNNRTG	1 cut(s)	444
SaqAI	TTAA	3 cut(s)	89, 210, 544
SatI	GCNGC	1 cut(s)	390
Sau3AI	GATC	2 cut(s)	264, 523
Sau96I	GGNCC	1 cut(s)	425
SduI	GDGCHC	1 cut(s)	226
SetI	ASST	6 cut(s)	135, 291, 391, 411, 456, 519
SfaNI	GCATC	2 cut(s)	55, 325
SmiMI	CAYNNNNRTG	1 cut(s)	444
Sse9I	AATT	4 cut(s)	57, 102, 242, 432
SspMI	CTAG	3 cut(s)	272, 339, 366
TaaI	ACNGT	2 cut(s)	190, 482
TasI	AATT	4 cut(s)	57, 102, 242, 432
TatI	WGTACW	1 cut(s)	463
TfiI	GAWTC	1 cut(s)	238
Tru1I	TTAA	3 cut(s)	89, 210, 544
Tru9I	TTAA	3 cut(s)	89, 210, 544
TscAI	CASTG	3 cut(s)	193, 226, 354
TseI	GCWGC	1 cut(s)	389
TspDTI	ATGAA	4 cut(s)	66, 74, 269, 401
TspGWI	ACGGA	1 cut(s)	388
TspRI	CASTG	3 cut(s)	193, 226, 354
Tth111I	GACNNNGTC	1 cut(s)	188
XapI	RAATTY	1 cut(s)	57
XceI	RCATGY	1 cut(s)	161
XcmI	CCANNNNNNNNNTGG	2 cut(s)	354, 536
XmnI	GAANNNNTTC	1 cut(s)	334
XspI	CTAG	3 cut(s)	272, 339, 366

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.