RLG00000000534
ERF Family

Belongs to the protein kinase superfamily. Ser Thr protein kinase family

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
Physical Location & Seq
Forward (+)
1726360 .. 1726949
590 bp
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UTR
Exon/CDS
Intron
RLM00000000534

Sequence Viewer

Length: 327 bp
ATGATCAACCTAGCAGTTCATCGCAACCTTCTCCGGCTTTACGGGTTTTGCATCACTCCAACAGAAAGACTTCTAGTTTACCCATACATGTCCAACGGCAGTGTGGCTTCTTGTGTCAAAGGGAAACCAATGTTGGATTGGAGAACTACGAAACGAATTGCCTTGGGAGCTGCAAGAGGATTGTTATACCTTCATGAGCAGTGTGACCCGAAAATTATCCACAAGGATGTGAAGGCAGCAAATGTACTTCTTGATGACTACTGTGAAGCCGTTGTCAGAGATTTTGATTTGGCAAAGCTTTTGGATCACCAAGTGTTCTGTGGTTAA

Protein Analysis

109

Amino Acids

12.24

Weight (kDa)

8.64

Isoelectric Point (pI)

25.66

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pkinase PF00069 4 - 104 8.1e-17 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 4 - 102 6.1e-15 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 312
AdeI CACNNNGTG 1 cut(s) 313
AfaI GTAC 1 cut(s) 246
AflIII ACRYGT 1 cut(s) 87
AjuI GAANNNNNNNTTGG 2 cut(s) 116, 148
AluBI AGCT 2 cut(s) 170, 298
AluI AGCT 2 cut(s) 170, 298
AlwI GGATC 1 cut(s) 312
ApeKI GCWGC 2 cut(s) 170, 236
Asp700I GAANNNNTTC 1 cut(s) 69
AsuHPI GGTGA 1 cut(s) 299
BbvI GCAGC 2 cut(s) 157, 248
BceAI ACGGC 2 cut(s) 112, 254
BclI TGATCA 1 cut(s) 3
BfaI CTAG 2 cut(s) 11, 74
BisI GCNGC 2 cut(s) 171, 237
BlsI GCNGC 2 cut(s) 172, 238
BmsI GCATC 1 cut(s) 60
BsaJI CCNNGG 1 cut(s) 162
BseDI CCNNGG 1 cut(s) 162
BseGI GGATG 1 cut(s) 232
BseXI GCAGC 2 cut(s) 157, 248
BsiSI CCGG 1 cut(s) 34
Bsp143I GATC 2 cut(s) 3, 304
BspHI TCATGA 1 cut(s) 193
BspPI GGATC 1 cut(s) 312
BssECI CCNNGG 1 cut(s) 162
BssMI GATC 2 cut(s) 3, 304
BssT1I CCWWGG 1 cut(s) 162
Bst4CI ACNGT 1 cut(s) 263
BstF5I GGATG 1 cut(s) 232
BstKTI GATC 2 cut(s) 6, 307
BstMBI GATC 2 cut(s) 3, 304
BstMWI GCNNNNNNNGC 1 cut(s) 167
BstNSI RCATGY 1 cut(s) 91
BstV1I GCAGC 2 cut(s) 157, 248
BtgZI GCGATG 1 cut(s) 5
BtsCI GGATG 1 cut(s) 232
BtsI GCAGTG 2 cut(s) 106, 206
BtsIMutI CAGTG 2 cut(s) 106, 206
CciI TCATGA 1 cut(s) 193
Csp6I GTAC 1 cut(s) 245
CviAII CATG 2 cut(s) 88, 194
CviJI RGCY 5 cut(s) 37, 107, 170, 269, 298
CviKI_1 RGCY 5 cut(s) 37, 107, 170, 269, 298
CviQI GTAC 1 cut(s) 245
DpnI GATC 2 cut(s) 5, 306
DpnII GATC 2 cut(s) 3, 304
DraIII CACNNNGTG 1 cut(s) 313
Eco130I CCWWGG 1 cut(s) 162
EcoT14I CCWWGG 1 cut(s) 162
ErhI CCWWGG 1 cut(s) 162
FaeI CATG 2 cut(s) 91, 197
FaiI YATR 4 cut(s) 85, 89, 187, 195
FatI CATG 2 cut(s) 87, 193
FbaI TGATCA 1 cut(s) 3
Fnu4HI GCNGC 2 cut(s) 171, 237
FokI GGATG 1 cut(s) 239
Fsp4HI GCNGC 2 cut(s) 171, 237
FspBI CTAG 2 cut(s) 11, 74
GluI GCNGC 2 cut(s) 171, 237
HapII CCGG 1 cut(s) 34
Hin1II CATG 2 cut(s) 91, 197
HindIII AAGCTT 1 cut(s) 296
HpaII CCGG 1 cut(s) 34
HphI GGTGA 1 cut(s) 299
Hpy166II GTNNAC 1 cut(s) 79
Hpy188I TCNGA 1 cut(s) 278
Hpy188III TCNNGA 2 cut(s) 194, 251
Hpy8I GTNNAC 1 cut(s) 79
HpyAV CCTTC 3 cut(s) 38, 200, 226
HpyCH4III ACNGT 1 cut(s) 263
HpyCH4V TGCA 2 cut(s) 51, 173
HpyF10VI GCNNNNNNNGC 1 cut(s) 167
Hsp92II CATG 2 cut(s) 91, 197
Ksp22I TGATCA 1 cut(s) 3
Kzo9I GATC 2 cut(s) 3, 304
LmnI GCTCC 1 cut(s) 167
LpnPI CCDG 1 cut(s) 47
Lsp1109I GCAGC 2 cut(s) 157, 248
LweI GCATC 1 cut(s) 60
MaeI CTAG 2 cut(s) 11, 74
MaeIII GTNAC 1 cut(s) 203
MalI GATC 2 cut(s) 5, 306
MboI GATC 2 cut(s) 3, 304
MluCI AATT 2 cut(s) 156, 213
MmeI TCCRAC 3 cut(s) 83, 114, 117
MnlI CCTC 1 cut(s) 170
MroXI GAANNNNTTC 1 cut(s) 69
MseI TTAA 1 cut(s) 325
MslI CAYNNNNRTG 1 cut(s) 225
MspI CCGG 1 cut(s) 34
MwoI GCNNNNNNNGC 1 cut(s) 167
NdeII GATC 2 cut(s) 3, 304
NlaIII CATG 2 cut(s) 91, 197
NmuCI GTSAC 1 cut(s) 203
NspI RCATGY 1 cut(s) 91
PagI TCATGA 1 cut(s) 193
PciI ACATGT 1 cut(s) 87
PdmI GAANNNNTTC 1 cut(s) 69
PkrI GCNGC 2 cut(s) 172, 238
PscI ACATGT 1 cut(s) 87
RsaI GTAC 1 cut(s) 246
RsaNI GTAC 1 cut(s) 245
RseI CAYNNNNRTG 1 cut(s) 225
SaqAI TTAA 1 cut(s) 325
SatI GCNGC 2 cut(s) 171, 237
Sau3AI GATC 2 cut(s) 3, 304
SetI ASST 5 cut(s) 12, 30, 172, 192, 300
SfaNI GCATC 1 cut(s) 60
SmiMI CAYNNNNRTG 1 cut(s) 225
Sse9I AATT 2 cut(s) 156, 213
SspMI CTAG 2 cut(s) 11, 74
StyI CCWWGG 1 cut(s) 162
TaaI ACNGT 1 cut(s) 263
TasI AATT 2 cut(s) 156, 213
TatI WGTACW 1 cut(s) 244
Tru1I TTAA 1 cut(s) 325
Tru9I TTAA 1 cut(s) 325
TscAI CASTG 2 cut(s) 106, 206
TseFI GTSAC 1 cut(s) 203
TseI GCWGC 2 cut(s) 170, 236
Tsp45I GTSAC 1 cut(s) 203
TspDTI ATGAA 2 cut(s) 8, 182
TspRI CASTG 2 cut(s) 106, 206
XceI RCATGY 1 cut(s) 91
XcmI CCANNNNNNNNNTGG 3 cut(s) 100, 135, 317
XmnI GAANNNNTTC 1 cut(s) 69
XspI CTAG 2 cut(s) 11, 74
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.