Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0001411

Physical Location & Seq

Genomic Coordinates Reverse (-)

36756654 .. 36769997

Gene Structure 13344 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00313360.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 588 bp

ATGCAAATGCAACAACAACAAATTCATCTACTAATAATGAGGGTGAATCCAGTGAAGCAAATGGAGAAGCATATCAAGACACTCATTGTCCTATCTCACTACTTGGAGGTGCAGTCTTTTTCCTCTCCATTGTCTACCATACTAAGCAAGCTCAAGAGTCAATACTCCACAACTCCCAAAAGGCGGATGAAGAACACACCCCAAAATACCAAAACCTCAAATCCAACCGTGAATGGCGAATGCGGAACTCATGAAGACTCGCACTCAAACTCAACCCCAAAAGTCAACAACGCAAGGTTCTCCATCTCTCATGTCGTCATCGCCACCTATCTCTGCTTTCTTCCTCGCACTCACTCAATTAGTTTGGGTCTTCTTTATCGCTCGCAAGTGTTGGATTGGGGAACTAGGAAACAAATTGCCTTGGGAGCTGCAAGAGGATTGTTATACCTTCATGAGCAGTGTGACCCGAAAATTATCCACAAGGATGTGAAGGTAGCAAATGTACTTCTTGATGACTACGTGAAGCCGTGGTCGGAGATTTTGATTTGGCAAAGCTTTTGGATCACCGAGTGTTCTGTGGTTAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002252 GO:0002376 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008104 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009615 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0031974 GO:0031981 GO:0033036 GO:0033365 GO:0034504 GO:0034613 GO:0036211 GO:0038023 GO:0040008 GO:0040014 GO:0040015 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045926 GO:0046777 GO:0048519 GO:0048638 GO:0048640 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051093 GO:0051179 GO:0051239 GO:0051241 GO:0051607 GO:0051641 GO:0051704 GO:0051707 GO:0051716 GO:0060089 GO:0065007 GO:0070013 GO:0070727 GO:0071704 GO:0071944 GO:0098542 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_4 LRR_8 Pkinase Pkinase_Tyr

Protein Analysis

195

Amino Acids

22.34

Weight (kDa)

9.58

Isoelectric Point (pI)

42.92

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001411)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0372821 RchiOBHm_Chr2g0120391 RchiOBHm_Chr3g0472751 RchiOBHm_Chr5g0036011 RchiOBHm_Chr6g0269661 RchiOBHm_Chr7g0231021
rosa_laevigata	RLG00000000534 RLG00000003816
rosa_multiflora	Rmu_sc0000084.1_g000050 Rmu_sc0001493.1_g000009 Rmu_sc0001851.1_g000026 Rmu_sc0003198.1_g000001 Rmu_sc0003198.1_g000002 Rmu_sc0004226.1_g000003 Rmu_sc0005738.1_g000004 Rmu_sc0006380.1_g000004 Rmu_sc0012041.1_g000003 Rmu_sc0017397.1_g000001
rosa_roxburghii	Rroxscaffold_4G00313360
rosa_rugosa	Rorug03G0325800 Rorug04G0073800 Rorug06G0052600
rosa_samantha	Rh1CG021400 Rh2CG235800 Rh2DG107900 Rh3AG180200 Rh3BG065800 Rh3BG206400 Rh3CG064500 Rh3CG203500 Rh3CG221800 Rh3CG270900 Rh3DG065700 Rh3DG132500 Rh3DG266800 Rh4AG242700 Rh4BG140300 Rh4BG140400 Rh4CG033900 Rh5AG093800 Rh5BG377400 Rh5BG426700 Rh5DG440600 Rh6AG048200 Rh6AG074100 Rh6AG148600 Rh6AG196800 Rh6AG406100 Rh7AG362100 Rh7BG138700 Rh7CG380700 Rh7DG335500
rosa_wichuraiana	Rw3G013510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	134
AciI	CCGC	2 cut(s)	184, 243
AclWI	GGATC	1 cut(s)	569
AcsI	RAATTY	1 cut(s)	21
AdeI	CACNNNGTG	1 cut(s)	570
AfaI	GTAC	1 cut(s)	504
AfiI	CCNNNNNNNGG	1 cut(s)	183
AluBI	AGCT	3 cut(s)	151, 428, 555
AluI	AGCT	3 cut(s)	151, 428, 555
AlwI	GGATC	1 cut(s)	569
ApeKI	GCWGC	1 cut(s)	428
ApoI	RAATTY	1 cut(s)	21
AsuHPI	GGTGA	2 cut(s)	55, 556
BbsI	GAAGAC	2 cut(s)	261, 362
BbvI	GCAGC	1 cut(s)	415
BccI	CCATC	1 cut(s)	311
BceAI	ACGGC	1 cut(s)	511
BfaI	CTAG	1 cut(s)	405
BisI	GCNGC	1 cut(s)	429
BlsI	GCNGC	1 cut(s)	430
BpiI	GAAGAC	2 cut(s)	261, 362
BpuEI	CTTGAG	1 cut(s)	137
BsaAI	YACGTR	1 cut(s)	520
BsaJI	CCNNGG	2 cut(s)	420, 527
BsaXI	ACNNNNNCTCC	2 cut(s)	98, 128
Bsc4I	CCNNNNNNNGG	1 cut(s)	183
Bse1I	ACTGG	1 cut(s)	50
BseDI	CCNNGG	2 cut(s)	420, 527
BseGI	GGATG	2 cut(s)	192, 490
BseLI	CCNNNNNNNGG	1 cut(s)	183
BseNI	ACTGG	1 cut(s)	50
BseXI	GCAGC	1 cut(s)	415
BsgI	GTGCAG	1 cut(s)	131
BslI	CCNNNNNNNGG	1 cut(s)	183
BsmI	GAATGC	1 cut(s)	245
Bsp143I	GATC	1 cut(s)	561
BspACI	CCGC	2 cut(s)	184, 243
BspHI	TCATGA	2 cut(s)	250, 451
BspPI	GGATC	1 cut(s)	569
BsrI	ACTGG	1 cut(s)	50
BssECI	CCNNGG	2 cut(s)	420, 527
BssMI	GATC	1 cut(s)	561
BssT1I	CCWWGG	1 cut(s)	420
Bst4CI	ACNGT	1 cut(s)	229
BstBAI	YACGTR	1 cut(s)	520
BstC8I	GCNNGC	2 cut(s)	149, 383
BstDEI	CTNAG	1 cut(s)	143
BstDSI	CCRYGG	1 cut(s)	527
BstF5I	GGATG	2 cut(s)	192, 490
BstKTI	GATC	1 cut(s)	564
BstMBI	GATC	1 cut(s)	561
BstMWI	GCNNNNNNNGC	1 cut(s)	425
BstV1I	GCAGC	1 cut(s)	415
BstV2I	GAAGAC	2 cut(s)	261, 362
BtgI	CCRYGG	1 cut(s)	527
BtgZI	GCGATG	1 cut(s)	304
BtsCI	GGATG	2 cut(s)	192, 490
BtsI	GCAGTG	1 cut(s)	464
BtsIMutI	CAGTG	2 cut(s)	57, 464
Cac8I	GCNNGC	2 cut(s)	149, 383
CciI	TCATGA	2 cut(s)	250, 451
Csp6I	GTAC	1 cut(s)	503
CviAII	CATG	3 cut(s)	251, 311, 452
CviJI	RGCY	4 cut(s)	151, 428, 526, 555
CviKI_1	RGCY	4 cut(s)	151, 428, 526, 555
CviQI	GTAC	1 cut(s)	503
DdeI	CTNAG	1 cut(s)	143
DpnI	GATC	1 cut(s)	563
DpnII	GATC	1 cut(s)	561
DraIII	CACNNNGTG	1 cut(s)	570
EciI	GGCGGA	1 cut(s)	199
Eco130I	CCWWGG	1 cut(s)	420
EcoT14I	CCWWGG	1 cut(s)	420
ErhI	CCWWGG	1 cut(s)	420
FaeI	CATG	3 cut(s)	254, 314, 455
FaiI	YATR	6 cut(s)	72, 140, 252, 312, 445, 453
FatI	CATG	3 cut(s)	250, 310, 451
FblI	GTMKAC	1 cut(s)	134
Fnu4HI	GCNGC	1 cut(s)	429
FokI	GGATG	2 cut(s)	199, 497
Fsp4HI	GCNGC	1 cut(s)	429
FspBI	CTAG	1 cut(s)	405
GluI	GCNGC	1 cut(s)	429
Hin1II	CATG	3 cut(s)	254, 314, 455
HincII	GTYRAC	1 cut(s)	286
HindII	GTYRAC	1 cut(s)	286
HindIII	AAGCTT	1 cut(s)	553
HinfI	GANTC	3 cut(s)	46, 157, 257
HphI	GGTGA	2 cut(s)	55, 556
Hpy166II	GTNNAC	2 cut(s)	135, 286
Hpy188I	TCNGA	1 cut(s)	535
Hpy188III	TCNNGA	5 cut(s)	76, 154, 251, 452, 509
Hpy8I	GTNNAC	2 cut(s)	135, 286
HpyAV	CCTTC	2 cut(s)	458, 484
HpyCH4III	ACNGT	1 cut(s)	229
HpyCH4IV	ACGT	1 cut(s)	519
HpyCH4V	TGCA	4 cut(s)	4, 10, 112, 431
HpyF10VI	GCNNNNNNNGC	1 cut(s)	425
HpyF3I	CTNAG	1 cut(s)	143
HpySE526I	ACGT	1 cut(s)	519
Hsp92II	CATG	3 cut(s)	254, 314, 455
Kzo9I	GATC	1 cut(s)	561
LmnI	GCTCC	1 cut(s)	425
LpnPI	CCDG	1 cut(s)	63
Lsp1109I	GCAGC	1 cut(s)	415
MaeI	CTAG	1 cut(s)	405
MaeII	ACGT	1 cut(s)	519
MaeIII	GTNAC	1 cut(s)	461
MalI	GATC	1 cut(s)	563
MboI	GATC	1 cut(s)	561
MboII	GAAGA	4 cut(s)	202, 266, 332, 362
MluCI	AATT	4 cut(s)	21, 357, 414, 471
MlyI	GAGTC	2 cut(s)	166, 251
MmeI	TCCRAC	3 cut(s)	248, 372, 513
MnlI	CCTC	6 cut(s)	33, 100, 133, 226, 354, 428
MseI	TTAA	1 cut(s)	582
MslI	CAYNNNNRTG	1 cut(s)	483
Mva1269I	GAATGC	1 cut(s)	245
MwoI	GCNNNNNNNGC	1 cut(s)	425
NdeII	GATC	1 cut(s)	561
NlaIII	CATG	3 cut(s)	254, 314, 455
NmuCI	GTSAC	1 cut(s)	461
PagI	TCATGA	2 cut(s)	250, 451
PctI	GAATGC	1 cut(s)	245
PfeI	GAWTC	1 cut(s)	46
PkrI	GCNGC	1 cut(s)	430
PleI	GAGTC	2 cut(s)	165, 251
PpsI	GAGTC	2 cut(s)	165, 251
Ppu21I	YACGTR	1 cut(s)	520
RsaI	GTAC	1 cut(s)	504
RsaNI	GTAC	1 cut(s)	503
RseI	CAYNNNNRTG	1 cut(s)	483
SaqAI	TTAA	1 cut(s)	582
SatI	GCNGC	1 cut(s)	429
Sau3AI	GATC	1 cut(s)	561
SchI	GAGTC	2 cut(s)	166, 251
SmiMI	CAYNNNNRTG	1 cut(s)	483
SmlI	CTYRAG	1 cut(s)	152
SmoI	CTYRAG	1 cut(s)	152
Sse9I	AATT	4 cut(s)	21, 357, 414, 471
SsiI	CCGC	2 cut(s)	184, 243
SspMI	CTAG	1 cut(s)	405
StyI	CCWWGG	1 cut(s)	420
TaaI	ACNGT	1 cut(s)	229
TaiI	ACGT	1 cut(s)	522
TasI	AATT	4 cut(s)	21, 357, 414, 471
TatI	WGTACW	1 cut(s)	502
TfiI	GAWTC	1 cut(s)	46
Tru1I	TTAA	1 cut(s)	582
Tru9I	TTAA	1 cut(s)	582
TscAI	CASTG	2 cut(s)	57, 464
TseFI	GTSAC	1 cut(s)	461
TseI	GCWGC	1 cut(s)	428
Tsp45I	GTSAC	1 cut(s)	461
TspDTI	ATGAA	4 cut(s)	14, 203, 267, 440
TspRI	CASTG	2 cut(s)	57, 464
XapI	RAATTY	1 cut(s)	21
XmiI	GTMKAC	1 cut(s)	134
XspI	CTAG	1 cut(s)	405

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.