Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0001411

Physical Location & Seq

Genomic Coordinates Forward (+)

60364262 .. 60384748

Gene Structure 20487 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG406100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 525 bp

ATGGACTGGTTTTCCCCGTACAGGAAAAGTGATATGACCCGACGGGGAAATGCCAAATCTGGTTACCTAAATGTAACGCCGGGCAATGCAACCACCACTGACGCTGTGACAGGTGTCAGTCCCACTCCAAGGTCGCCTTCTGTGCCGCCACTCTTCCTCAGCCCTCAGTCAGTCAGCCCCCATAAATCGGTCTTCCTCACCTCTGGGTCTTCTCCGCGACGTTTCCTGCGGCAGTCCGGCCTCTCAGCTCTCAGTTTTGAAGATGCTGCAATAGAAAGAGAAAAACCCAATCCAGCTGCACAAAGCTTCAACAATGACGACAAGTCAACGATAGTCCAGACCTCCGAGGAAGATTCGGCTCTCGCCGTCGTCCGATACGCCTCCGAGCAAGCCTGGGCTGACACTGGCGCTGAGCCAGAGAAATGTCTTTACACTATTGTGAGGGAACTTGTGGAGAACTCACTTGATTCGACGGAGTCCATATCGGAGCTTCCTCTTGATAGAAATCACAATCTGGGTTCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000902 GO:0003674 GO:0003735 GO:0003824 GO:0003916 GO:0003918 GO:0005198 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006412 GO:0006518 GO:0006725 GO:0006807 GO:0007049 GO:0007275 GO:0007389 GO:0008094 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009330 GO:0009653 GO:0009719 GO:0009725 GO:0009741 GO:0009888 GO:0009987 GO:0010026 GO:0010033 GO:0010467 GO:0014070 GO:0015935 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016853 GO:0016887 GO:0017111 GO:0019538 GO:0022402 GO:0022613 GO:0030154 GO:0032501 GO:0032502 GO:0032989 GO:0032991 GO:0033993 GO:0034641 GO:0034645 GO:0042023 GO:0042221 GO:0042254 GO:0042623 GO:0042802 GO:0042803 GO:0043043 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043603 GO:0043604 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044446 GO:0044464 GO:0044786 GO:0046483 GO:0046983 GO:0048856 GO:0048869 GO:0050896 GO:0061505 GO:0071704 GO:0071840 GO:0090304 GO:0090558 GO:0140097 GO:1901360 GO:1901564 GO:1901566 GO:1901576 GO:1901700 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HATPase_c HATPase_c_3 Topo-VIb_trans

Protein Analysis

174

Amino Acids

18.94

Weight (kDa)

5.07

Isoelectric Point (pI)

63.19

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001411)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0372821 RchiOBHm_Chr2g0120391 RchiOBHm_Chr3g0472751 RchiOBHm_Chr5g0036011 RchiOBHm_Chr6g0269661 RchiOBHm_Chr7g0231021
rosa_laevigata	RLG00000000534 RLG00000003816
rosa_multiflora	Rmu_sc0000084.1_g000050 Rmu_sc0001493.1_g000009 Rmu_sc0001851.1_g000026 Rmu_sc0003198.1_g000001 Rmu_sc0003198.1_g000002 Rmu_sc0004226.1_g000003 Rmu_sc0005738.1_g000004 Rmu_sc0006380.1_g000004 Rmu_sc0012041.1_g000003 Rmu_sc0017397.1_g000001
rosa_roxburghii	Rroxscaffold_4G00313360
rosa_rugosa	Rorug03G0325800 Rorug04G0073800 Rorug06G0052600
rosa_samantha	Rh1CG021400 Rh2CG235800 Rh2DG107900 Rh3AG180200 Rh3BG065800 Rh3BG206400 Rh3CG064500 Rh3CG203500 Rh3CG221800 Rh3CG270900 Rh3DG065700 Rh3DG132500 Rh3DG266800 Rh4AG242700 Rh4BG140300 Rh4BG140400 Rh4CG033900 Rh5AG093800 Rh5BG377400 Rh5BG426700 Rh5DG440600 Rh6AG048200 Rh6AG074100 Rh6AG148600 Rh6AG196800 Rh6AG406100 Rh7AG362100 Rh7BG138700 Rh7CG380700 Rh7DG335500
rosa_wichuraiana	Rw3G013510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	217
AciI	CCGC	3 cut(s)	146, 215, 229
AfaI	GTAC	1 cut(s)	20
AfiI	CCNNNNNNNGG	3 cut(s)	21, 129, 187
AgsI	TTSAA	2 cut(s)	260, 310
AhdI	GACNNNNNGTC	1 cut(s)	322
AjnI	CCWGG	1 cut(s)	392
AjuI	GAANNNNNNNTTGG	2 cut(s)	121, 153
AleI	CACNNNNGTG	1 cut(s)	437
AluBI	AGCT	4 cut(s)	248, 296, 306, 490
AluI	AGCT	4 cut(s)	248, 296, 306, 490
AoxI	GGCC	1 cut(s)	238
ApeKI	GCWGC	2 cut(s)	266, 296
AspLEI	GCGC	1 cut(s)	410
AsuC2I	CCSGG	1 cut(s)	81
AsuHPI	GGTGA	1 cut(s)	190
BbsI	GAAGAC	2 cut(s)	184, 201
BbvCI	CCTCAGC	1 cut(s)	158
BbvI	GCAGC	2 cut(s)	253, 283
BceAI	ACGGC	1 cut(s)	350
BciT130I	CCWGG	1 cut(s)	394
BcnI	CCSGG	1 cut(s)	81
BfoI	RGCGCY	1 cut(s)	411
BisI	GCNGC	4 cut(s)	146, 230, 267, 297
BlpI	GCTNAGC	1 cut(s)	411
BlsI	GCNGC	4 cut(s)	147, 231, 268, 298
Bme1390I	CCNGG	2 cut(s)	81, 394
BmeRI	GACNNNNNGTC	1 cut(s)	322
BmrFI	CCNGG	2 cut(s)	81, 394
BmsI	GCATC	1 cut(s)	253
BoxI	GACNNNNGTC	1 cut(s)	113
BpiI	GAAGAC	2 cut(s)	184, 201
Bpu10I	CCTNAGC	1 cut(s)	158
Bpu1102I	GCTNAGC	1 cut(s)	411
BpuMI	CCSGG	1 cut(s)	81
BsaBI	GATNNNNATC	1 cut(s)	504
BsaJI	CCNNGG	3 cut(s)	128, 345, 393
Bsc4I	CCNNNNNNNGG	3 cut(s)	21, 129, 187
Bse1I	ACTGG	2 cut(s)	11, 409
Bse3DI	GCAATG	1 cut(s)	91
Bse8I	GATNNNNATC	1 cut(s)	504
BseBI	CCWGG	1 cut(s)	394
BseDI	CCNNGG	3 cut(s)	128, 345, 393
BseJI	GATNNNNATC	1 cut(s)	504
BseLI	CCNNNNNNNGG	3 cut(s)	21, 129, 187
BseMI	GCAATG	1 cut(s)	91
BseMII	CTCAG	5 cut(s)	172, 179, 258, 265, 402
BseNI	ACTGG	2 cut(s)	11, 409
BseXI	GCAGC	2 cut(s)	253, 283
BsgI	GTGCAG	1 cut(s)	282
Bsh1236I	CGCG	1 cut(s)	217
BshFI	GGCC	1 cut(s)	240
BsiSI	CCGG	2 cut(s)	80, 237
BslFI	GGGAC	1 cut(s)	105
BslI	CCNNNNNNNGG	3 cut(s)	21, 129, 187
BsmFI	GGGAC	1 cut(s)	105
BsnI	GGCC	1 cut(s)	240
Bsp1720I	GCTNAGC	1 cut(s)	411
BspACI	CCGC	3 cut(s)	146, 215, 229
BspANI	GGCC	1 cut(s)	240
BspCNI	CTCAG	5 cut(s)	171, 178, 257, 264, 403
BspFNI	CGCG	1 cut(s)	217
BsrDI	GCAATG	1 cut(s)	91
BsrI	ACTGG	2 cut(s)	11, 409
BssECI	CCNNGG	3 cut(s)	128, 345, 393
BssT1I	CCWWGG	1 cut(s)	128
Bst2UI	CCWGG	1 cut(s)	394
Bst6I	CTCTTC	1 cut(s)	158
BstC8I	GCNNGC	1 cut(s)	390
BstDEI	CTNAG	5 cut(s)	158, 165, 244, 251, 411
BstEII	GGTNACC	1 cut(s)	62
BstFNI	CGCG	1 cut(s)	217
BstH2I	RGCGCY	1 cut(s)	411
BstHHI	GCGC	1 cut(s)	410
BstMWI	GCNNNNNNNGC	1 cut(s)	142
BstNI	CCWGG	1 cut(s)	394
BstPAI	GACNNNNGTC	1 cut(s)	113
BstPI	GGTNACC	1 cut(s)	62
BstSCI	CCNGG	2 cut(s)	79, 392
BstUI	CGCG	1 cut(s)	217
BstV1I	GCAGC	2 cut(s)	253, 283
BstV2I	GAAGAC	2 cut(s)	184, 201
BsuRI	GGCC	1 cut(s)	240
BtsIMutI	CAGTG	2 cut(s)	96, 402
Cac8I	GCNNGC	1 cut(s)	390
CfoI	GCGC	1 cut(s)	410
CseI	GACGC	1 cut(s)	110
Csp6I	GTAC	1 cut(s)	19
CviQI	GTAC	1 cut(s)	19
DdeI	CTNAG	5 cut(s)	158, 165, 244, 251, 411
DriI	GACNNNNNGTC	1 cut(s)	322
Eam1104I	CTCTTC	1 cut(s)	158
Eam1105I	GACNNNNNGTC	1 cut(s)	322
EarI	CTCTTC	1 cut(s)	158
Eco130I	CCWWGG	1 cut(s)	128
Eco91I	GGTNACC	1 cut(s)	62
EcoO65I	GGTNACC	1 cut(s)	62
EcoRII	CCWGG	1 cut(s)	392
EcoT14I	CCWWGG	1 cut(s)	128
ErhI	CCWWGG	1 cut(s)	128
FaiI	YATR	3 cut(s)	35, 183, 482
FalI	AAGNNNNNCTT	2 cut(s)	121, 153
FaqI	GGGAC	1 cut(s)	105
Fnu4HI	GCNGC	4 cut(s)	146, 230, 267, 297
Fsp4HI	GCNGC	4 cut(s)	146, 230, 267, 297
GlaI	GCGC	1 cut(s)	409
GluI	GCNGC	4 cut(s)	146, 230, 267, 297
HaeII	RGCGCY	1 cut(s)	411
HaeIII	GGCC	1 cut(s)	240
HapII	CCGG	2 cut(s)	80, 237
HgaI	GACGC	1 cut(s)	110
HhaI	GCGC	1 cut(s)	410
Hin6I	GCGC	1 cut(s)	408
HinP1I	GCGC	1 cut(s)	408
HincII	GTYRAC	1 cut(s)	327
HindII	GTYRAC	1 cut(s)	327
HindIII	AAGCTT	1 cut(s)	304
HinfI	GANTC	3 cut(s)	353, 467, 476
HpaII	CCGG	2 cut(s)	80, 237
HphI	GGTGA	1 cut(s)	190
Hpy166II	GTNNAC	1 cut(s)	327
Hpy188I	TCNGA	4 cut(s)	346, 374, 385, 487
Hpy188III	TCNNGA	2 cut(s)	337, 497
Hpy8I	GTNNAC	1 cut(s)	327
Hpy99I	CGWCG	4 cut(s)	45, 222, 371, 475
HpyAV	CCTTC	1 cut(s)	147
HpyCH4IV	ACGT	1 cut(s)	220
HpyCH4V	TGCA	3 cut(s)	89, 269, 299
HpyF10VI	GCNNNNNNNGC	1 cut(s)	142
HpyF3I	CTNAG	5 cut(s)	158, 165, 244, 251, 411
HpySE526I	ACGT	1 cut(s)	220
HspAI	GCGC	1 cut(s)	408
LmnI	GCTCC	1 cut(s)	487
Lsp1109I	GCAGC	2 cut(s)	253, 283
LweI	GCATC	1 cut(s)	253
MaeII	ACGT	1 cut(s)	220
MaeIII	GTNAC	3 cut(s)	62, 73, 106
MboII	GAAGA	5 cut(s)	145, 184, 201, 272, 362
MlyI	GAGTC	1 cut(s)	485
MseI	TTAA	1 cut(s)	523
MslI	CAYNNNNRTG	1 cut(s)	437
MspA1I	CMGCKG	1 cut(s)	296
MspI	CCGG	2 cut(s)	80, 237
MspR9I	CCNGG	2 cut(s)	81, 394
MvaI	CCWGG	1 cut(s)	394
MvnI	CGCG	1 cut(s)	217
MwoI	GCNNNNNNNGC	1 cut(s)	142
NciI	CCSGG	1 cut(s)	81
NmuCI	GTSAC	1 cut(s)	106
OliI	CACNNNNGTG	1 cut(s)	437
PfeI	GAWTC	2 cut(s)	353, 467
PflFI	GACNNNGTC	1 cut(s)	475
PkrI	GCNGC	4 cut(s)	147, 231, 268, 298
PleI	GAGTC	1 cut(s)	484
PpsI	GAGTC	1 cut(s)	484
PshAI	GACNNNNGTC	1 cut(s)	113
Psp6I	CCWGG	1 cut(s)	392
PspEI	GGTNACC	1 cut(s)	62
PspGI	CCWGG	1 cut(s)	392
PsyI	GACNNNGTC	1 cut(s)	475
PvuII	CAGCTG	1 cut(s)	296
RsaI	GTAC	1 cut(s)	20
RsaNI	GTAC	1 cut(s)	19
RseI	CAYNNNNRTG	1 cut(s)	437
SaqAI	TTAA	1 cut(s)	523
SatI	GCNGC	4 cut(s)	146, 230, 267, 297
SchI	GAGTC	1 cut(s)	485
ScrFI	CCNGG	2 cut(s)	81, 394
SfaNI	GCATC	1 cut(s)	253
SmiMI	CAYNNNNRTG	1 cut(s)	437
SsiI	CCGC	3 cut(s)	146, 215, 229
StyD4I	CCNGG	2 cut(s)	79, 392
StyI	CCWWGG	1 cut(s)	128
TaiI	ACGT	1 cut(s)	223
TaqI	TCGA	1 cut(s)	470
TaqII	GACCGA	1 cut(s)	178
TauI	GCSGC	2 cut(s)	148, 232
TfiI	GAWTC	2 cut(s)	353, 467
Tru1I	TTAA	1 cut(s)	523
Tru9I	TTAA	1 cut(s)	523
TscAI	CASTG	2 cut(s)	103, 409
TseFI	GTSAC	1 cut(s)	106
TseI	GCWGC	2 cut(s)	266, 296
Tsp45I	GTSAC	1 cut(s)	106
TspGWI	ACGGA	1 cut(s)	488
TspRI	CASTG	2 cut(s)	103, 409
Tth111I	GACNNNGTC	1 cut(s)	475

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.