Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0001411

Physical Location & Seq

Genomic Coordinates Reverse (-)

11443978 .. 11447258

Gene Structure 3281 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0073800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1041 bp

ATGCAGACTGGCGATCCCGAGAAATCAGTGGCTGCGGCTGAGAGTATTGAGACAATAAGTGATGCTGTGAACGATTCTCCTAACAAGATTTTCATTGGTGGGATATCAAAGGCTCTTTCCTCAGAAATGCTTCTGGAAATCGTTACTGTCTTTGGACCTTTGAAGGCATACCATTTTGAGGCCAATGAGGAACTTAATGAACCATGTGCTTTTCTAGAGTATGTCGGCCAGTCAGTTACTCTCAAAGCCTGTGCGGGTCCGAATAGTATCAAATTGGAAGGGAGAGTGCTAACTGTGGTTCAGGCAATTCGTAGTGGATCATCCATGGTAAATAGTGGAAATGCATCACTCTATGAGATCCCAGAACATGCAAAGCCACTTCTCAAACAACCTTCACATATCCTGAAGCTTAGAAATGTGTTCAATCTGGAGCATATGTCATCACAGTCTGAACAAGAGATTGAAGAAGTTCTGGAAGATGTGCGATTAGAATTTGCCAGGTTTGGCATGGTTAAATCTGTAAAGATCTTCAAGCATGCAAACAATCACATTGTCACCACTAGAGCGTGTGAAGCTGTCAATGATACAGAATCTGGTGGGCACTGGCAACATTTATGTTCTGAAGAAAAAGGAGCAAAAACAGAGACTTTGGACCAACATATTGATAATGACGGCAAGGAAACTAGTGGAGTGAAGCTTACTGGGGAACATAAAGAAGTTGAAGTCCCAGAAAGTAATTGCTTTGGTTATTATAAACCAGCAGATGATTTTGTAGAGGACAAGTCATGTCAAATGGGCCAACCAGATAAAGATATTGAAATCCAAGGAAGCAATGACTCACTTAATAGGGATCCCGAAGAACTCAGCAACCAGTCAAACGGCATGGAAGATGCGTCAGAGTATTATAATGATAAAACTTCTGAAGTTACAACAGTAGAGAGTTCTATTCTAGAGGAAGTTGATGGTAAGAAACAAGAGACTTTTGCTGGAACAGATGACAATGTGGGAACAGAAACAGACTATTCTGGAGAGTGGAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002252 GO:0002376 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008104 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009615 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0031974 GO:0031981 GO:0033036 GO:0033365 GO:0034504 GO:0034613 GO:0036211 GO:0038023 GO:0040008 GO:0040014 GO:0040015 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045926 GO:0046777 GO:0048519 GO:0048638 GO:0048640 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051093 GO:0051179 GO:0051239 GO:0051241 GO:0051607 GO:0051641 GO:0051704 GO:0051707 GO:0051716 GO:0060089 GO:0065007 GO:0070013 GO:0070727 GO:0071704 GO:0071944 GO:0098542 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_4 LRR_8 Pkinase Pkinase_Tyr

Protein Analysis

346

Amino Acids

38.12

Weight (kDa)

4.54

Isoelectric Point (pI)

48.03

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001411)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0372821 RchiOBHm_Chr2g0120391 RchiOBHm_Chr3g0472751 RchiOBHm_Chr5g0036011 RchiOBHm_Chr6g0269661 RchiOBHm_Chr7g0231021
rosa_laevigata	RLG00000000534 RLG00000003816
rosa_multiflora	Rmu_sc0000084.1_g000050 Rmu_sc0001493.1_g000009 Rmu_sc0001851.1_g000026 Rmu_sc0003198.1_g000001 Rmu_sc0003198.1_g000002 Rmu_sc0004226.1_g000003 Rmu_sc0005738.1_g000004 Rmu_sc0006380.1_g000004 Rmu_sc0012041.1_g000003 Rmu_sc0017397.1_g000001
rosa_roxburghii	Rroxscaffold_4G00313360
rosa_rugosa	Rorug03G0325800 Rorug04G0073800 Rorug06G0052600
rosa_samantha	Rh1CG021400 Rh2CG235800 Rh2DG107900 Rh3AG180200 Rh3BG065800 Rh3BG206400 Rh3CG064500 Rh3CG203500 Rh3CG221800 Rh3CG270900 Rh3DG065700 Rh3DG132500 Rh3DG266800 Rh4AG242700 Rh4BG140300 Rh4BG140400 Rh4CG033900 Rh5AG093800 Rh5BG377400 Rh5BG426700 Rh5DG440600 Rh6AG048200 Rh6AG074100 Rh6AG148600 Rh6AG196800 Rh6AG406100 Rh7AG362100 Rh7BG138700 Rh7CG380700 Rh7DG335500
rosa_wichuraiana	Rw3G013510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	753, 906
AciI	CCGC	2 cut(s)	35, 254
AclWI	GGATC	5 cut(s)	8, 325, 352, 845, 858
AcoI	YGGCCR	1 cut(s)	226
AcsI	RAATTY	1 cut(s)	491
AcuI	CTGAAG	3 cut(s)	425, 642, 942
AfiI	CCNNNNNNNGG	1 cut(s)	178
AgsI	TTSAA	6 cut(s)	163, 424, 464, 532, 722, 818
AhlI	ACTAGT	1 cut(s)	683
AjnI	CCWGG	1 cut(s)	497
AluBI	AGCT	3 cut(s)	409, 575, 697
AluI	AGCT	3 cut(s)	409, 575, 697
Alw26I	GTCTC	3 cut(s)	44, 638, 971
AlwI	GGATC	5 cut(s)	8, 325, 352, 845, 858
AlwNI	CAGNNNCTG	2 cut(s)	32, 593
Ama87I	CYCGRG	1 cut(s)	17
AoxI	GGCC	3 cut(s)	180, 226, 796
ApeKI	GCWGC	1 cut(s)	32
ApoI	RAATTY	1 cut(s)	491
Asp700I	GAANNNNTTC	2 cut(s)	129, 468
AspS9I	GGNCC	4 cut(s)	155, 257, 652, 796
AsuHPI	GGTGA	1 cut(s)	547
AvaI	CYCGRG	1 cut(s)	17
AvaII	GGWCC	3 cut(s)	155, 257, 652
BaeGI	GKGCMC	1 cut(s)	603
BamHI	GGATCC	1 cut(s)	850
BbvI	GCAGC	1 cut(s)	19
BccI	CCATC	1 cut(s)	956
BceAI	ACGGC	2 cut(s)	688, 895
BciT130I	CCWGG	1 cut(s)	499
BcoDI	GTCTC	3 cut(s)	44, 638, 971
BcuI	ACTAGT	1 cut(s)	683
BfaI	CTAG	4 cut(s)	215, 561, 684, 950
BglII	AGATCT	1 cut(s)	525
BisI	GCNGC	2 cut(s)	33, 36
BlsI	GCNGC	2 cut(s)	34, 37
Bme1390I	CCNGG	1 cut(s)	499
Bme18I	GGWCC	3 cut(s)	155, 257, 652
BmeT110I	CYCGRG	1 cut(s)	17
BmgT120I	GGNCC	4 cut(s)	155, 257, 652, 796
BmiI	GGNNCC	2 cut(s)	258, 852
BmrFI	CCNGG	1 cut(s)	499
BmrI	ACTGGG	1 cut(s)	711
BmsI	GCATC	3 cut(s)	52, 353, 880
BmuI	ACTGGG	1 cut(s)	711
BpmI	CTGGAG	1 cut(s)	449
BsaJI	CCNNGG	2 cut(s)	324, 823
BsaXI	ACNNNNNCTCC	2 cut(s)	422, 452
Bsc4I	CCNNNNNNNGG	1 cut(s)	178
Bse1I	ACTGG	5 cut(s)	13, 229, 608, 706, 871
Bse3DI	GCAATG	1 cut(s)	838
BseBI	CCWGG	1 cut(s)	499
BseDI	CCNNGG	2 cut(s)	324, 823
BseGI	GGATG	1 cut(s)	320
BseLI	CCNNNNNNNGG	1 cut(s)	178
BseMI	GCAATG	1 cut(s)	838
BseMII	CTCAG	3 cut(s)	30, 135, 877
BseNI	ACTGG	5 cut(s)	13, 229, 608, 706, 871
BseSI	GKGCMC	1 cut(s)	603
BseXI	GCAGC	1 cut(s)	19
BshFI	GGCC	3 cut(s)	182, 228, 798
BsiHKCI	CYCGRG	1 cut(s)	17
BslFI	GGGAC	1 cut(s)	710
BslI	CCNNNNNNNGG	1 cut(s)	178
BsmAI	GTCTC	3 cut(s)	44, 638, 971
BsmFI	GGGAC	1 cut(s)	710
BsnI	GGCC	3 cut(s)	182, 228, 798
BsoBI	CYCGRG	1 cut(s)	17
Bsp1286I	GDGCHC	1 cut(s)	603
Bsp143I	GATC	5 cut(s)	13, 317, 357, 525, 850
Bsp19I	CCATGG	1 cut(s)	324
BspACI	CCGC	2 cut(s)	35, 254
BspANI	GGCC	3 cut(s)	182, 228, 798
BspCNI	CTCAG	3 cut(s)	31, 134, 876
BspLI	GGNNCC	2 cut(s)	258, 852
BspPI	GGATC	5 cut(s)	8, 325, 352, 845, 858
BsrDI	GCAATG	1 cut(s)	838
BsrI	ACTGG	5 cut(s)	13, 229, 608, 706, 871
BssECI	CCNNGG	2 cut(s)	324, 823
BssMI	GATC	5 cut(s)	13, 317, 357, 525, 850
BssT1I	CCWWGG	2 cut(s)	324, 823
Bst2UI	CCWGG	1 cut(s)	499
Bst4CI	ACNGT	4 cut(s)	148, 295, 447, 934
BstC8I	GCNNGC	1 cut(s)	537
BstDEI	CTNAG	4 cut(s)	39, 121, 410, 863
BstDSI	CCRYGG	1 cut(s)	324
BstF5I	GGATG	1 cut(s)	320
BstKTI	GATC	5 cut(s)	16, 320, 360, 528, 853
BstMAI	GTCTC	3 cut(s)	44, 638, 971
BstMBI	GATC	5 cut(s)	13, 317, 357, 525, 850
BstMWI	GCNNNNNNNGC	1 cut(s)	572
BstNI	CCWGG	1 cut(s)	499
BstNSI	RCATGY	2 cut(s)	371, 539
BstSCI	CCNGG	1 cut(s)	497
BstSLI	GKGCMC	1 cut(s)	603
BstV1I	GCAGC	1 cut(s)	19
BstX2I	RGATCY	3 cut(s)	357, 525, 850
BstYI	RGATCY	3 cut(s)	357, 525, 850
BsuRI	GGCC	3 cut(s)	182, 228, 798
BtgI	CCRYGG	1 cut(s)	324
BtsCI	GGATG	1 cut(s)	320
BtsIMutI	CAGTG	2 cut(s)	33, 601
Cac8I	GCNNGC	1 cut(s)	537
CaiI	CAGNNNCTG	2 cut(s)	32, 593
Cfr13I	GGNCC	4 cut(s)	155, 257, 652, 796
CseI	GACGC	1 cut(s)	882
CviAII	CATG	7 cut(s)	204, 325, 368, 508, 536, 786, 883
DdeI	CTNAG	4 cut(s)	39, 121, 410, 863
DpnI	GATC	5 cut(s)	15, 319, 359, 527, 852
DpnII	GATC	5 cut(s)	13, 317, 357, 525, 850
EaeI	YGGCCR	1 cut(s)	226
Eco130I	CCWWGG	2 cut(s)	324, 823
Eco32I	GATATC	1 cut(s)	105
Eco47I	GGWCC	3 cut(s)	155, 257, 652
Eco57I	CTGAAG	3 cut(s)	425, 642, 942
Eco88I	CYCGRG	1 cut(s)	17
EcoRII	CCWGG	1 cut(s)	497
EcoRV	GATATC	1 cut(s)	105
EcoT14I	CCWWGG	2 cut(s)	324, 823
EcoT22I	ATGCAT	1 cut(s)	346
ErhI	CCWWGG	2 cut(s)	324, 823
FaeI	CATG	7 cut(s)	207, 328, 371, 511, 539, 789, 886
FaqI	GGGAC	1 cut(s)	710
FatI	CATG	7 cut(s)	203, 324, 367, 507, 535, 785, 882
FauI	CCCGC	1 cut(s)	247
FauNDI	CATATG	1 cut(s)	435
Fnu4HI	GCNGC	2 cut(s)	33, 36
FokI	GGATG	1 cut(s)	307
Fsp4HI	GCNGC	2 cut(s)	33, 36
FspBI	CTAG	4 cut(s)	215, 561, 684, 950
GluI	GCNGC	2 cut(s)	33, 36
GsuI	CTGGAG	1 cut(s)	449
HaeIII	GGCC	3 cut(s)	182, 228, 798
HgaI	GACGC	1 cut(s)	882
Hin1II	CATG	7 cut(s)	207, 328, 371, 511, 539, 789, 886
HindIII	AAGCTT	2 cut(s)	407, 695
HinfI	GANTC	3 cut(s)	74, 590, 836
HphI	GGTGA	1 cut(s)	547
Hpy166II	GTNNAC	1 cut(s)	70
Hpy188I	TCNGA	6 cut(s)	124, 261, 451, 622, 898, 922
Hpy188III	TCNNGA	9 cut(s)	17, 134, 215, 403, 428, 473, 854, 950, 1026
Hpy8I	GTNNAC	1 cut(s)	70
HpyAV	CCTTC	3 cut(s)	157, 272, 402
HpyCH4III	ACNGT	4 cut(s)	148, 295, 447, 934
HpyCH4V	TGCA	4 cut(s)	4, 344, 371, 539
HpyF10VI	GCNNNNNNNGC	1 cut(s)	572
HpyF3I	CTNAG	4 cut(s)	39, 121, 410, 863
Hsp92II	CATG	7 cut(s)	207, 328, 371, 511, 539, 789, 886
Kzo9I	GATC	5 cut(s)	13, 317, 357, 525, 850
LmnI	GCTCC	2 cut(s)	430, 632
Lsp1109I	GCAGC	1 cut(s)	19
LweI	GCATC	3 cut(s)	52, 353, 880
MaeI	CTAG	4 cut(s)	215, 561, 684, 950
MaeIII	GTNAC	4 cut(s)	142, 235, 553, 925
MalI	GATC	5 cut(s)	15, 319, 359, 527, 852
MboI	GATC	5 cut(s)	13, 317, 357, 525, 850
MboII	GAAGA	6 cut(s)	476, 488, 520, 635, 869, 899
MflI	RGATCY	3 cut(s)	357, 525, 850
MhlI	GDGCHC	1 cut(s)	603
MluCI	AATT	4 cut(s)	272, 306, 491, 736
MlyI	GAGTC	1 cut(s)	830
MnlI	CCTC	5 cut(s)	130, 172, 181, 769, 946
Mph1103I	ATGCAT	1 cut(s)	346
MroXI	GAANNNNTTC	2 cut(s)	129, 468
MseI	TTAA	3 cut(s)	195, 513, 843
MspR9I	CCNGG	1 cut(s)	499
MvaI	CCWGG	1 cut(s)	499
MwoI	GCNNNNNNNGC	1 cut(s)	572
NcoI	CCATGG	1 cut(s)	324
NdeI	CATATG	1 cut(s)	435
NdeII	GATC	5 cut(s)	13, 317, 357, 525, 850
NlaIII	CATG	7 cut(s)	207, 328, 371, 511, 539, 789, 886
NlaIV	GGNNCC	2 cut(s)	258, 852
NmuCI	GTSAC	1 cut(s)	553
NsiI	ATGCAT	1 cut(s)	346
NspI	RCATGY	2 cut(s)	371, 539
PaeI	GCATGC	1 cut(s)	539
PdmI	GAANNNNTTC	2 cut(s)	129, 468
PfeI	GAWTC	2 cut(s)	74, 590
PkrI	GCNGC	2 cut(s)	34, 37
PleI	GAGTC	1 cut(s)	830
PpsI	GAGTC	1 cut(s)	830
PsiI	TTATAA	2 cut(s)	753, 906
Psp6I	CCWGG	1 cut(s)	497
PspGI	CCWGG	1 cut(s)	497
PspN4I	GGNNCC	2 cut(s)	258, 852
PspPI	GGNCC	4 cut(s)	155, 257, 652, 796
PstNI	CAGNNNCTG	2 cut(s)	32, 593
PsuI	RGATCY	3 cut(s)	357, 525, 850
SaqAI	TTAA	3 cut(s)	195, 513, 843
SatI	GCNGC	2 cut(s)	33, 36
Sau3AI	GATC	5 cut(s)	13, 317, 357, 525, 850
Sau96I	GGNCC	4 cut(s)	155, 257, 652, 796
SchI	GAGTC	1 cut(s)	830
ScrFI	CCNGG	1 cut(s)	499
SduI	GDGCHC	1 cut(s)	603
SetI	ASST	6 cut(s)	160, 394, 411, 503, 577, 699
SfaNI	GCATC	3 cut(s)	52, 353, 880
SinI	GGWCC	3 cut(s)	155, 257, 652
SpeI	ACTAGT	1 cut(s)	683
SphI	GCATGC	1 cut(s)	539
Sse9I	AATT	4 cut(s)	272, 306, 491, 736
SsiI	CCGC	2 cut(s)	35, 254
SspMI	CTAG	4 cut(s)	215, 561, 684, 950
StyD4I	CCNGG	1 cut(s)	497
StyI	CCWWGG	2 cut(s)	324, 823
TaaI	ACNGT	4 cut(s)	148, 295, 447, 934
TasI	AATT	4 cut(s)	272, 306, 491, 736
TauI	GCSGC	1 cut(s)	38
TfiI	GAWTC	2 cut(s)	74, 590
Tru1I	TTAA	3 cut(s)	195, 513, 843
Tru9I	TTAA	3 cut(s)	195, 513, 843
TscAI	CASTG	2 cut(s)	33, 608
TseFI	GTSAC	1 cut(s)	553
TseI	GCWGC	1 cut(s)	32
Tsp45I	GTSAC	1 cut(s)	553
TspDTI	ATGAA	2 cut(s)	82, 213
TspRI	CASTG	2 cut(s)	33, 608
VpaK11BI	GGWCC	3 cut(s)	155, 257, 652
XapI	RAATTY	1 cut(s)	491
XbaI	TCTAGA	2 cut(s)	214, 949
XceI	RCATGY	2 cut(s)	371, 539
XcmI	CCANNNNNNNNNTGG	1 cut(s)	505
XmnI	GAANNNNTTC	2 cut(s)	129, 468
XspI	CTAG	4 cut(s)	215, 561, 684, 950
Zsp2I	ATGCAT	1 cut(s)	346

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.