Rh2DG107900

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0001411
Physical Location & Seq
Forward (+)
8859106 .. 8867310
8205 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG107900.1

Sequence Viewer

Length: 258 bp
ATGGAGGTTATGGCTCCTTCAAAGACATTGGCTACCTCAAGAGCAAAAGAAAATATTCTTAAGGCATTGAGAGCTACAAGAGCGAGCGCAAAGAAGCGTTTGGAGTTAGAGGTTGAAGTTCAGGAGGAAGTACAAGAAGAAAATATTGTGAAGCTGCCGGTGGAAGAACCAGTGGCTATAGAGGTTGAAGAAAAGGCTATTCAGTTGGTGGAAGTCACACAACAGTGGAATCAAAATTTACAATGCTCAGATGGATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

85

Amino Acids

9.59

Weight (kDa)

4.78

Isoelectric Point (pI)

71.5

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 235
AfaI GTAC 1 cut(s) 132
AflII CTTAAG 1 cut(s) 59
AgsI TTSAA 3 cut(s) 21, 116, 188
AleI CACNNNNGTG 1 cut(s) 223
AluBI AGCT 2 cut(s) 74, 154
AluI AGCT 2 cut(s) 74, 154
ApeKI GCWGC 1 cut(s) 154
ApoI RAATTY 1 cut(s) 235
Asp700I GAANNNNTTC 1 cut(s) 54
AspLEI GCGC 1 cut(s) 89
BbvI GCAGC 1 cut(s) 141
BccI CCATC 1 cut(s) 245
BfmI CTRYAG 1 cut(s) 177
BfrI CTTAAG 1 cut(s) 59
BisI GCNGC 1 cut(s) 155
BlsI GCNGC 1 cut(s) 156
BmiI GGNNCC 1 cut(s) 15
BpuEI CTTGAG 1 cut(s) 22
Bse118I RCCGGY 1 cut(s) 157
Bse1I ACTGG 1 cut(s) 170
BseNI ACTGG 1 cut(s) 170
BseXI GCAGC 1 cut(s) 141
BsiSI CCGG 1 cut(s) 158
BspLI GGNNCC 1 cut(s) 15
BspTI CTTAAG 1 cut(s) 59
BsrFI RCCGGY 1 cut(s) 157
BsrI ACTGG 1 cut(s) 170
BssAI RCCGGY 1 cut(s) 157
Bst4CI ACNGT 1 cut(s) 225
BstAFI CTTAAG 1 cut(s) 59
BstC8I GCNNGC 1 cut(s) 85
BstDEI CTNAG 1 cut(s) 247
BstHHI GCGC 1 cut(s) 89
BstMWI GCNNNNNNNGC 2 cut(s) 71, 80
BstSFI CTRYAG 1 cut(s) 177
BstV1I GCAGC 1 cut(s) 141
BtsIMutI CAGTG 2 cut(s) 177, 230
Cac8I GCNNGC 1 cut(s) 85
CfoI GCGC 1 cut(s) 89
Cfr10I RCCGGY 1 cut(s) 157
Csp6I GTAC 1 cut(s) 131
CviJI RGCY 6 cut(s) 14, 32, 74, 154, 176, 197
CviKI_1 RGCY 6 cut(s) 14, 32, 74, 154, 176, 197
CviQI GTAC 1 cut(s) 131
DdeI CTNAG 1 cut(s) 247
FaiI YATR 2 cut(s) 11, 179
Fnu4HI GCNGC 1 cut(s) 155
Fsp4HI GCNGC 1 cut(s) 155
GlaI GCGC 1 cut(s) 88
GluI GCNGC 1 cut(s) 155
HapII CCGG 1 cut(s) 158
HhaI GCGC 1 cut(s) 89
Hin6I GCGC 1 cut(s) 87
HinP1I GCGC 1 cut(s) 87
HinfI GANTC 1 cut(s) 229
HpaII CCGG 1 cut(s) 158
Hpy188I TCNGA 1 cut(s) 250
Hpy188III TCNNGA 2 cut(s) 39, 122
HpyAV CCTTC 1 cut(s) 27
HpyCH4III ACNGT 1 cut(s) 225
HpyF10VI GCNNNNNNNGC 2 cut(s) 71, 80
HpyF3I CTNAG 1 cut(s) 247
HspAI GCGC 1 cut(s) 87
LmnI GCTCC 1 cut(s) 19
LpnPI CCDG 3 cut(s) 107, 171, 183
Lsp1109I GCAGC 1 cut(s) 141
MaeIII GTNAC 1 cut(s) 214
MboII GAAGA 3 cut(s) 149, 176, 200
MluCI AATT 1 cut(s) 235
MnlI CCTC 4 cut(s) 46, 103, 118, 175
MroXI GAANNNNTTC 1 cut(s) 54
MseI TTAA 1 cut(s) 60
MslI CAYNNNNRTG 1 cut(s) 223
MspCI CTTAAG 1 cut(s) 59
MspI CCGG 1 cut(s) 158
MwoI GCNNNNNNNGC 2 cut(s) 71, 80
NlaIV GGNNCC 1 cut(s) 15
NmuCI GTSAC 1 cut(s) 214
OliI CACNNNNGTG 1 cut(s) 223
PdmI GAANNNNTTC 1 cut(s) 54
PfeI GAWTC 1 cut(s) 229
PkrI GCNGC 1 cut(s) 156
PspN4I GGNNCC 1 cut(s) 15
RsaI GTAC 1 cut(s) 132
RsaNI GTAC 1 cut(s) 131
RseI CAYNNNNRTG 1 cut(s) 223
SaqAI TTAA 1 cut(s) 60
SatI GCNGC 1 cut(s) 155
SetI ASST 6 cut(s) 9, 38, 76, 114, 156, 186
SfcI CTRYAG 1 cut(s) 177
SgeI CNNG 7 cut(s) 51, 90, 96, 134, 146, 170, 182
SmiMI CAYNNNNRTG 1 cut(s) 223
SmlI CTYRAG 2 cut(s) 37, 59
SmoI CTYRAG 2 cut(s) 37, 59
Sse9I AATT 1 cut(s) 235
SspI AATATT 2 cut(s) 55, 145
TaaI ACNGT 1 cut(s) 225
TasI AATT 1 cut(s) 235
TatI WGTACW 1 cut(s) 130
TfiI GAWTC 1 cut(s) 229
Tru1I TTAA 1 cut(s) 60
Tru9I TTAA 1 cut(s) 60
TscAI CASTG 2 cut(s) 177, 230
TseFI GTSAC 1 cut(s) 214
TseI GCWGC 1 cut(s) 154
Tsp45I GTSAC 1 cut(s) 214
TspRI CASTG 2 cut(s) 177, 230
Vha464I CTTAAG 1 cut(s) 59
XapI RAATTY 1 cut(s) 235
XmnI GAANNNNTTC 1 cut(s) 54
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.