Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005738.1

Orthogroup ID

OG0001411

Physical Location & Seq

Genomic Coordinates Reverse (-)

12522 .. 12856

Gene Structure 335 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005738.1_g000004.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 243 bp

atgtccaatggcagtgtggcttctcgtgtcaaagggaaaccagtgttggattggggaactaggaaacgaattgccttgggagccgcaagaggattgttataccttcatgagcagtgtgacccgaaaattatccacaaggatgtgaaggtagcaaatgtacttcttgatgactactgtgaagctgtggcggagattttgatttggcaaagcttttggatcaccaagtgttctgtggttaagtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002252 GO:0002376 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008104 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009615 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0031974 GO:0031981 GO:0033036 GO:0033365 GO:0034504 GO:0034613 GO:0036211 GO:0038023 GO:0040008 GO:0040014 GO:0040015 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045926 GO:0046777 GO:0048519 GO:0048638 GO:0048640 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051093 GO:0051179 GO:0051239 GO:0051241 GO:0051607 GO:0051641 GO:0051704 GO:0051707 GO:0051716 GO:0060089 GO:0065007 GO:0070013 GO:0070727 GO:0071704 GO:0071944 GO:0098542 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_4 LRR_8 Pkinase Pkinase_Tyr

Protein Analysis

80

Amino Acids

8.95

Weight (kDa)

9.15

Isoelectric Point (pI)

30.31

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001411)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0372821 RchiOBHm_Chr2g0120391 RchiOBHm_Chr3g0472751 RchiOBHm_Chr5g0036011 RchiOBHm_Chr6g0269661 RchiOBHm_Chr7g0231021
rosa_laevigata	RLG00000000534 RLG00000003816
rosa_multiflora	Rmu_sc0000084.1_g000050 Rmu_sc0001493.1_g000009 Rmu_sc0001851.1_g000026 Rmu_sc0003198.1_g000001 Rmu_sc0003198.1_g000002 Rmu_sc0004226.1_g000003 Rmu_sc0005738.1_g000004 Rmu_sc0006380.1_g000004 Rmu_sc0012041.1_g000003 Rmu_sc0017397.1_g000001
rosa_roxburghii	Rroxscaffold_4G00313360
rosa_rugosa	Rorug03G0325800 Rorug04G0073800 Rorug06G0052600
rosa_samantha	Rh1CG021400 Rh2CG235800 Rh2DG107900 Rh3AG180200 Rh3BG065800 Rh3BG206400 Rh3CG064500 Rh3CG203500 Rh3CG221800 Rh3CG270900 Rh3DG065700 Rh3DG132500 Rh3DG266800 Rh4AG242700 Rh4BG140300 Rh4BG140400 Rh4CG033900 Rh5AG093800 Rh5BG377400 Rh5BG426700 Rh5DG440600 Rh6AG048200 Rh6AG074100 Rh6AG148600 Rh6AG196800 Rh6AG406100 Rh7AG362100 Rh7BG138700 Rh7CG380700 Rh7DG335500
rosa_wichuraiana	Rw3G013510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	84, 188
AclWI	GGATC	1 cut(s)	224
AdeI	CACNNNGTG	1 cut(s)	225
AfaI	GTAC	1 cut(s)	159
AjuI	GAANNNNNNNTTGG	2 cut(s)	29, 61
AluBI	AGCT	2 cut(s)	182, 210
AluI	AGCT	2 cut(s)	182, 210
AlwI	GGATC	1 cut(s)	224
AsuHPI	GGTGA	1 cut(s)	211
BauI	CACGAG	1 cut(s)	24
BfaI	CTAG	1 cut(s)	60
BisI	GCNGC	1 cut(s)	84
BlsI	GCNGC	1 cut(s)	85
BmiI	GGNNCC	1 cut(s)	82
BsaJI	CCNNGG	1 cut(s)	75
Bse1I	ACTGG	1 cut(s)	41
BseDI	CCNNGG	1 cut(s)	75
BseGI	GGATG	1 cut(s)	145
BseNI	ACTGG	1 cut(s)	41
Bsp143I	GATC	1 cut(s)	216
BspACI	CCGC	2 cut(s)	84, 188
BspHI	TCATGA	1 cut(s)	106
BspLI	GGNNCC	1 cut(s)	82
BspPI	GGATC	1 cut(s)	224
BsrI	ACTGG	1 cut(s)	41
BssECI	CCNNGG	1 cut(s)	75
BssMI	GATC	1 cut(s)	216
BssSI	CACGAG	1 cut(s)	24
BssT1I	CCWWGG	1 cut(s)	75
Bst2BI	CACGAG	1 cut(s)	24
Bst4CI	ACNGT	1 cut(s)	176
BstF5I	GGATG	1 cut(s)	145
BstKTI	GATC	1 cut(s)	219
BstMBI	GATC	1 cut(s)	216
BstMWI	GCNNNNNNNGC	1 cut(s)	80
BtsCI	GGATG	1 cut(s)	145
BtsI	GCAGTG	2 cut(s)	19, 119
BtsIMutI	CAGTG	3 cut(s)	19, 48, 119
CciI	TCATGA	1 cut(s)	106
Csp6I	GTAC	1 cut(s)	158
CviAII	CATG	1 cut(s)	107
CviJI	RGCY	4 cut(s)	20, 83, 182, 210
CviKI_1	RGCY	4 cut(s)	20, 83, 182, 210
CviQI	GTAC	1 cut(s)	158
DpnI	GATC	1 cut(s)	218
DpnII	GATC	1 cut(s)	216
DraIII	CACNNNGTG	1 cut(s)	225
EciI	GGCGGA	1 cut(s)	203
Eco130I	CCWWGG	1 cut(s)	75
EcoT14I	CCWWGG	1 cut(s)	75
ErhI	CCWWGG	1 cut(s)	75
FaeI	CATG	1 cut(s)	110
FaiI	YATR	2 cut(s)	100, 108
FatI	CATG	1 cut(s)	106
Fnu4HI	GCNGC	1 cut(s)	84
FokI	GGATG	1 cut(s)	152
Fsp4HI	GCNGC	1 cut(s)	84
FspBI	CTAG	1 cut(s)	60
GluI	GCNGC	1 cut(s)	84
Hin1II	CATG	1 cut(s)	110
HindIII	AAGCTT	1 cut(s)	208
HphI	GGTGA	1 cut(s)	211
Hpy188III	TCNNGA	2 cut(s)	107, 164
HpyAV	CCTTC	2 cut(s)	113, 139
HpyCH4III	ACNGT	1 cut(s)	176
HpyF10VI	GCNNNNNNNGC	1 cut(s)	80
Hsp92II	CATG	1 cut(s)	110
Kzo9I	GATC	1 cut(s)	216
LmnI	GCTCC	1 cut(s)	80
LpnPI	CCDG	1 cut(s)	54
MaeI	CTAG	1 cut(s)	60
MaeIII	GTNAC	1 cut(s)	116
MalI	GATC	1 cut(s)	218
MboI	GATC	1 cut(s)	216
MluCI	AATT	2 cut(s)	69, 126
MmeI	TCCRAC	1 cut(s)	27
MnlI	CCTC	1 cut(s)	83
MseI	TTAA	1 cut(s)	237
MslI	CAYNNNNRTG	1 cut(s)	138
MwoI	GCNNNNNNNGC	1 cut(s)	80
NdeII	GATC	1 cut(s)	216
NlaIII	CATG	1 cut(s)	110
NlaIV	GGNNCC	1 cut(s)	82
NmuCI	GTSAC	1 cut(s)	116
PagI	TCATGA	1 cut(s)	106
PkrI	GCNGC	1 cut(s)	85
PspN4I	GGNNCC	1 cut(s)	82
RsaI	GTAC	1 cut(s)	159
RsaNI	GTAC	1 cut(s)	158
RseI	CAYNNNNRTG	1 cut(s)	138
SaqAI	TTAA	1 cut(s)	237
SatI	GCNGC	1 cut(s)	84
Sau3AI	GATC	1 cut(s)	216
SetI	ASST	4 cut(s)	105, 150, 184, 212
SmiMI	CAYNNNNRTG	1 cut(s)	138
Sse9I	AATT	2 cut(s)	69, 126
SsiI	CCGC	2 cut(s)	84, 188
SspMI	CTAG	1 cut(s)	60
StyI	CCWWGG	1 cut(s)	75
TaaI	ACNGT	1 cut(s)	176
TasI	AATT	2 cut(s)	69, 126
TatI	WGTACW	1 cut(s)	157
TauI	GCSGC	1 cut(s)	86
Tru1I	TTAA	1 cut(s)	237
Tru9I	TTAA	1 cut(s)	237
TscAI	CASTG	3 cut(s)	19, 48, 119
TseFI	GTSAC	1 cut(s)	116
Tsp45I	GTSAC	1 cut(s)	116
TspDTI	ATGAA	1 cut(s)	95
TspRI	CASTG	3 cut(s)	19, 48, 119
XcmI	CCANNNNNNNNNTGG	3 cut(s)	13, 48, 229
XspI	CTAG	1 cut(s)	60

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.