Rh5BG426700

No description available

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
Physical Location & Seq
Reverse (-)
69080931 .. 69081278
348 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5BG426700.1

Sequence Viewer

Length: 348 bp
ATGACTGAGTTGGATTGTGAAGAAACAGGGACCTATGTGTATTGTTGCGCAATCAAGCATCGAAAATTGATTTGGGAGCAGCCCATAAATGAAGTAGCAATGGTGGATCCTACTGATGCTAATGAGCAGGAAAGTAATGAGAAAGAGGGGCCAGATTTAGAAAAGGACTCTGATATGTCGAAACTGTTCAATGTTCCAATTGTTGCTTATGGTTTTGGAGTGGAAAATATTAATAAACTTGTTACGACTGACAAGGGAGTCGAAGAATGTATGAAGGAACAGGGAGATGGGAAGAAAAGTATTTCTCCAAAGAAGAAATTTGAAGGAAGGGTAAGAAGACTTTGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

115

Amino Acids

13.13

Weight (kDa)

4.89

Isoelectric Point (pI)

46.15

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 257
Acc16I TGCGCA 1 cut(s) 49
AclWI GGATC 2 cut(s) 101, 114
AcsI RAATTY 1 cut(s) 317
AgsI TTSAA 2 cut(s) 190, 323
AjuI GAANNNNNNNTTGG 2 cut(s) 55, 87
AlwI GGATC 2 cut(s) 101, 114
AoxI GGCC 1 cut(s) 149
ApeKI GCWGC 1 cut(s) 79
ApoI RAATTY 1 cut(s) 317
AseI ATTAAT 1 cut(s) 231
Asp700I GAANNNNTTC 1 cut(s) 185
AspLEI GCGC 1 cut(s) 50
AspS9I GGNCC 2 cut(s) 30, 149
AvaII GGWCC 1 cut(s) 30
BamHI GGATCC 1 cut(s) 106
BbsI GAAGAC 1 cut(s) 343
BbvI GCAGC 1 cut(s) 91
BccI CCATC 1 cut(s) 281
BisI GCNGC 1 cut(s) 80
BlsI GCNGC 1 cut(s) 81
Bme18I GGWCC 1 cut(s) 30
BmgT120I GGNCC 2 cut(s) 30, 149
BmiI GGNNCC 3 cut(s) 31, 108, 150
BmsI GCATC 2 cut(s) 67, 106
BpiI GAAGAC 1 cut(s) 343
Bse3DI GCAATG 1 cut(s) 105
BseMI GCAATG 1 cut(s) 105
BseXI GCAGC 1 cut(s) 91
BshFI GGCC 1 cut(s) 151
BslFI GGGAC 1 cut(s) 43
BsmFI GGGAC 1 cut(s) 43
BsnI GGCC 1 cut(s) 151
Bsp143I GATC 1 cut(s) 106
BspANI GGCC 1 cut(s) 151
BspLI GGNNCC 3 cut(s) 31, 108, 150
BspPI GGATC 2 cut(s) 101, 114
BsrDI GCAATG 1 cut(s) 105
BssMI GATC 1 cut(s) 106
Bst4CI ACNGT 1 cut(s) 186
BstDEI CTNAG 1 cut(s) 6
BstHHI GCGC 1 cut(s) 50
BstKTI GATC 1 cut(s) 109
BstMBI GATC 1 cut(s) 106
BstV1I GCAGC 1 cut(s) 91
BstV2I GAAGAC 1 cut(s) 343
BstX2I RGATCY 1 cut(s) 106
BstYI RGATCY 1 cut(s) 106
BsuRI GGCC 1 cut(s) 151
CfoI GCGC 1 cut(s) 50
Cfr13I GGNCC 2 cut(s) 30, 149
CviJI RGCY 2 cut(s) 82, 151
CviKI_1 RGCY 2 cut(s) 82, 151
DdeI CTNAG 1 cut(s) 6
DpnI GATC 1 cut(s) 108
DpnII GATC 1 cut(s) 106
DrdI GACNNNNNNGTC 1 cut(s) 257
DseDI GACNNNNNNGTC 1 cut(s) 257
Eco47I GGWCC 1 cut(s) 30
EcoO109I RGGNCCY 1 cut(s) 30
FaiI YATR 5 cut(s) 36, 86, 176, 210, 272
FaqI GGGAC 1 cut(s) 43
Fnu4HI GCNGC 1 cut(s) 80
Fsp4HI GCNGC 1 cut(s) 80
FspI TGCGCA 1 cut(s) 49
GlaI GCGC 1 cut(s) 49
GluI GCNGC 1 cut(s) 80
HaeIII GGCC 1 cut(s) 151
HhaI GCGC 1 cut(s) 50
Hin6I GCGC 1 cut(s) 48
HinP1I GCGC 1 cut(s) 48
HinfI GANTC 2 cut(s) 167, 258
Hpy188I TCNGA 1 cut(s) 172
HpyAV CCTTC 3 cut(s) 268, 317, 321
HpyCH4III ACNGT 1 cut(s) 186
HpyF3I CTNAG 1 cut(s) 6
HspAI GCGC 1 cut(s) 48
Kzo9I GATC 1 cut(s) 106
LmnI GCTCC 1 cut(s) 76
LpnPI CCDG 4 cut(s) 12, 113, 165, 266
Lsp1109I GCAGC 1 cut(s) 91
LweI GCATC 2 cut(s) 67, 106
MaeIII GTNAC 1 cut(s) 241
MalI GATC 1 cut(s) 108
MboI GATC 1 cut(s) 106
MboII GAAGA 5 cut(s) 32, 275, 304, 325, 348
MfeI CAATTG 1 cut(s) 198
MflI RGATCY 1 cut(s) 106
MluCI AATT 3 cut(s) 65, 198, 317
MlyI GAGTC 2 cut(s) 161, 267
MnlI CCTC 1 cut(s) 139
MroXI GAANNNNTTC 1 cut(s) 185
MseI TTAA 1 cut(s) 231
MunI CAATTG 1 cut(s) 198
NdeII GATC 1 cut(s) 106
NlaIV GGNNCC 3 cut(s) 31, 108, 150
NsbI TGCGCA 1 cut(s) 49
PdmI GAANNNNTTC 1 cut(s) 185
PkrI GCNGC 1 cut(s) 81
PleI GAGTC 2 cut(s) 161, 266
PpsI GAGTC 2 cut(s) 161, 266
PpuMI RGGWCCY 1 cut(s) 30
PshBI ATTAAT 1 cut(s) 231
Psp5II RGGWCCY 1 cut(s) 30
PspN4I GGNNCC 3 cut(s) 31, 108, 150
PspPI GGNCC 2 cut(s) 30, 149
PspPPI RGGWCCY 1 cut(s) 30
PsuI RGATCY 1 cut(s) 106
SaqAI TTAA 1 cut(s) 231
SatI GCNGC 1 cut(s) 80
Sau3AI GATC 1 cut(s) 106
Sau96I GGNCC 2 cut(s) 30, 149
SchI GAGTC 2 cut(s) 161, 267
SetI ASST 1 cut(s) 35
SfaNI GCATC 2 cut(s) 67, 106
SgeI CNNG 7 cut(s) 39, 67, 140, 164, 251, 265, 293
SinI GGWCC 1 cut(s) 30
Sse9I AATT 3 cut(s) 65, 198, 317
SspI AATATT 1 cut(s) 229
TaaI ACNGT 1 cut(s) 186
TaqI TCGA 3 cut(s) 61, 179, 261
TasI AATT 3 cut(s) 65, 198, 317
Tru1I TTAA 1 cut(s) 231
Tru9I TTAA 1 cut(s) 231
TseI GCWGC 1 cut(s) 79
TspDTI ATGAA 2 cut(s) 105, 287
VpaK11BI GGWCC 1 cut(s) 30
VspI ATTAAT 1 cut(s) 231
XapI RAATTY 1 cut(s) 317
XmnI GAANNNNTTC 1 cut(s) 185
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.