Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0001411

Physical Location & Seq

Genomic Coordinates Reverse (-)

70618166 .. 70624950

Gene Structure 6785 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG440600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 840 bp

ATGTGGTCTATGAAAGCCCCTGAAATTGGAGTTAGTGGAGTAGTGCGAGAACGTGAGGAGATGACTGAGTTGGATTGTGAAGAAACAGGGACCTATGTGTATTGTAGCGCAATCAAGCATCGAAAATTGATTTGGGAGCAGCCCATAAATGAAGTAGCAATGCTGGATCCTACTGATGCTAATGAGCAGGAAAGTAATGAGAAAGAGGGGCCAGATTTAGAAAAGGACTCTGATATGTCGAAACTGTTCAATGTTCCAATTGTTGCTTATGGTTTTGGAGTGGAAAATATTAATAAACTTGTTACGACTGACAAGGGAGTCGAAGAATTGATGATTGATAACAAACAAGTCAGATTGACTGGCTTCTATGGTAATCTTGAGACCGGTGAAAGACACCATTCTTGGGAAGCACTTCGCAGTCTTTCACAATTGTTTCCTCATGTTGGTTGGATAGTTTTTGGGGATTTTAATGAGATTCGAAATGATGGGGAGAAAACTGGAGGGAGGTTGCGACTTGTTTGTCAGATGGAAAGATTTAGGACACTTTTGGCCAAGAAAGGGGCAGATTTGGTGGTTTGTGGTGTTGAATTGCAGGTCAGCTTTCTGAATATTAATGGTTTCGGTTTGAAGAGCAGTAAGAAACCCAAATCAAAGACTCCGGCAAAGAAGCCCAAAGACAGTGTTCTTGAGCAGAAATCTCCAGCTGAGTTCTTCGCTAAGAACAAGAACATTGCTGGATTTGGGAAATGTCTTTATACTACTGTGAGGGAACTTGTGGAGAACTCATTTGATTCGACGGAGTCCATATCGGAGCTTCCTCTGATAGAAATCACAATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000902 GO:0003674 GO:0003735 GO:0003824 GO:0003916 GO:0003918 GO:0005198 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006412 GO:0006518 GO:0006725 GO:0006807 GO:0007049 GO:0007275 GO:0007389 GO:0008094 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009330 GO:0009653 GO:0009719 GO:0009725 GO:0009741 GO:0009888 GO:0009987 GO:0010026 GO:0010033 GO:0010467 GO:0014070 GO:0015935 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016853 GO:0016887 GO:0017111 GO:0019538 GO:0022402 GO:0022613 GO:0030154 GO:0032501 GO:0032502 GO:0032989 GO:0032991 GO:0033993 GO:0034641 GO:0034645 GO:0042023 GO:0042221 GO:0042254 GO:0042623 GO:0042802 GO:0042803 GO:0043043 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043603 GO:0043604 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044446 GO:0044464 GO:0044786 GO:0046483 GO:0046983 GO:0048856 GO:0048869 GO:0050896 GO:0061505 GO:0071704 GO:0071840 GO:0090304 GO:0090558 GO:0140097 GO:1901360 GO:1901564 GO:1901566 GO:1901576 GO:1901700 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HATPase_c HATPase_c_3 Topo-VIb_trans

Protein Analysis

279

Amino Acids

31.45

Weight (kDa)

5.28

Isoelectric Point (pI)

41.3

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001411)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0372821 RchiOBHm_Chr2g0120391 RchiOBHm_Chr3g0472751 RchiOBHm_Chr5g0036011 RchiOBHm_Chr6g0269661 RchiOBHm_Chr7g0231021
rosa_laevigata	RLG00000000534 RLG00000003816
rosa_multiflora	Rmu_sc0000084.1_g000050 Rmu_sc0001493.1_g000009 Rmu_sc0001851.1_g000026 Rmu_sc0003198.1_g000001 Rmu_sc0003198.1_g000002 Rmu_sc0004226.1_g000003 Rmu_sc0005738.1_g000004 Rmu_sc0006380.1_g000004 Rmu_sc0012041.1_g000003 Rmu_sc0017397.1_g000001
rosa_roxburghii	Rroxscaffold_4G00313360
rosa_rugosa	Rorug03G0325800 Rorug04G0073800 Rorug06G0052600
rosa_samantha	Rh1CG021400 Rh2CG235800 Rh2DG107900 Rh3AG180200 Rh3BG065800 Rh3BG206400 Rh3CG064500 Rh3CG203500 Rh3CG221800 Rh3CG270900 Rh3DG065700 Rh3DG132500 Rh3DG266800 Rh4AG242700 Rh4BG140300 Rh4BG140400 Rh4CG033900 Rh5AG093800 Rh5BG377400 Rh5BG426700 Rh5DG440600 Rh6AG048200 Rh6AG074100 Rh6AG148600 Rh6AG196800 Rh6AG406100 Rh7AG362100 Rh7BG138700 Rh7CG380700 Rh7DG335500
rosa_wichuraiana	Rw3G013510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	317, 519
Acc36I	ACCTGC	1 cut(s)	583
AclWI	GGATC	2 cut(s)	161, 174
AcoI	YGGCCR	1 cut(s)	549
AdeI	CACNNNGTG	1 cut(s)	837
AfiI	CCNNNNNNNGG	4 cut(s)	26, 403, 443, 558
AgeI	ACCGGT	1 cut(s)	383
AgsI	TTSAA	3 cut(s)	250, 587, 628
AjuI	GAANNNNNNNTTGG	2 cut(s)	115, 147
AluBI	AGCT	3 cut(s)	600, 704, 814
AluI	AGCT	3 cut(s)	600, 704, 814
Alw26I	GTCTC	1 cut(s)	374
AlwI	GGATC	2 cut(s)	161, 174
AoxI	GGCC	2 cut(s)	209, 549
ApeKI	GCWGC	1 cut(s)	139
AseI	ATTAAT	2 cut(s)	291, 612
AsiGI	ACCGGT	1 cut(s)	383
Asp700I	GAANNNNTTC	2 cut(s)	245, 411
AspLEI	GCGC	1 cut(s)	110
AspS9I	GGNCC	2 cut(s)	90, 209
AsuHPI	GGTGA	1 cut(s)	398
AsuII	TTCGAA	1 cut(s)	478
AvaII	GGWCC	1 cut(s)	90
BalI	TGGCCA	1 cut(s)	551
BamHI	GGATCC	1 cut(s)	166
BbvI	GCAGC	1 cut(s)	151
BccI	CCATC	2 cut(s)	479, 520
BcoDI	GTCTC	1 cut(s)	374
BfuAI	ACCTGC	1 cut(s)	583
BisI	GCNGC	1 cut(s)	140
BlsI	GCNGC	1 cut(s)	141
Bme18I	GGWCC	1 cut(s)	90
BmgT120I	GGNCC	2 cut(s)	90, 209
BmiI	GGNNCC	3 cut(s)	91, 168, 210
BmsI	GCATC	2 cut(s)	127, 166
BpmI	CTGGAG	2 cut(s)	519, 684
Bpu14I	TTCGAA	1 cut(s)	478
BpuEI	CTTGAG	2 cut(s)	398, 707
BsaBI	GATNNNNATC	1 cut(s)	827
BsaI	GGTCTC	1 cut(s)	374
BsaWI	WCCGGW	1 cut(s)	383
Bsc4I	CCNNNNNNNGG	4 cut(s)	26, 403, 443, 558
Bse118I	RCCGGY	1 cut(s)	383
Bse1I	ACTGG	2 cut(s)	364, 502
Bse3DI	GCAATG	2 cut(s)	165, 729
Bse8I	GATNNNNATC	1 cut(s)	827
BseJI	GATNNNNATC	1 cut(s)	827
BseLI	CCNNNNNNNGG	4 cut(s)	26, 403, 443, 558
BseMI	GCAATG	2 cut(s)	165, 729
BseMII	CTCAG	2 cut(s)	57, 696
BseNI	ACTGG	2 cut(s)	364, 502
BseRI	GAGGAG	1 cut(s)	71
BseXI	GCAGC	1 cut(s)	151
BshFI	GGCC	2 cut(s)	211, 551
BshTI	ACCGGT	1 cut(s)	383
BsiSI	CCGG	2 cut(s)	384, 659
BslFI	GGGAC	1 cut(s)	103
BslI	CCNNNNNNNGG	4 cut(s)	26, 403, 443, 558
BsmAI	GTCTC	1 cut(s)	374
BsmFI	GGGAC	1 cut(s)	103
BsnI	GGCC	2 cut(s)	211, 551
Bso31I	GGTCTC	1 cut(s)	374
Bsp119I	TTCGAA	1 cut(s)	478
Bsp143I	GATC	1 cut(s)	166
BspANI	GGCC	2 cut(s)	211, 551
BspCNI	CTCAG	2 cut(s)	58, 697
BspLI	GGNNCC	3 cut(s)	91, 168, 210
BspMI	ACCTGC	1 cut(s)	583
BspPI	GGATC	2 cut(s)	161, 174
BspQI	GCTCTTC	1 cut(s)	623
BspT104I	TTCGAA	1 cut(s)	478
BspTNI	GGTCTC	1 cut(s)	374
BsrDI	GCAATG	2 cut(s)	165, 729
BsrFI	RCCGGY	1 cut(s)	383
BsrI	ACTGG	2 cut(s)	364, 502
BssAI	RCCGGY	1 cut(s)	383
BssMI	GATC	1 cut(s)	166
Bst4CI	ACNGT	3 cut(s)	246, 680, 763
Bst6I	CTCTTC	1 cut(s)	623
BstBI	TTCGAA	1 cut(s)	478
BstDEI	CTNAG	3 cut(s)	66, 705, 717
BstHHI	GCGC	1 cut(s)	110
BstKTI	GATC	1 cut(s)	169
BstMAI	GTCTC	1 cut(s)	374
BstMBI	GATC	1 cut(s)	166
BstV1I	GCAGC	1 cut(s)	151
BstX2I	RGATCY	1 cut(s)	166
BstYI	RGATCY	1 cut(s)	166
BsuRI	GGCC	2 cut(s)	211, 551
BtsIMutI	CAGTG	1 cut(s)	685
BveI	ACCTGC	1 cut(s)	583
CfoI	GCGC	1 cut(s)	110
Cfr10I	RCCGGY	1 cut(s)	383
Cfr13I	GGNCC	2 cut(s)	90, 209
CspAI	ACCGGT	1 cut(s)	383
CviAII	CATG	1 cut(s)	440
CviJI	RGCY	9 cut(s)	17, 142, 211, 363, 551, 600, 670, 704, 814
CviKI_1	RGCY	9 cut(s)	17, 142, 211, 363, 551, 600, 670, 704, 814
DdeI	CTNAG	3 cut(s)	66, 705, 717
DpnI	GATC	1 cut(s)	168
DpnII	GATC	1 cut(s)	166
DraIII	CACNNNGTG	1 cut(s)	837
DrdI	GACNNNNNNGTC	2 cut(s)	317, 519
DseDI	GACNNNNNNGTC	2 cut(s)	317, 519
EaeI	YGGCCR	1 cut(s)	549
Eam1104I	CTCTTC	1 cut(s)	623
EarI	CTCTTC	1 cut(s)	623
Eco31I	GGTCTC	1 cut(s)	374
Eco47I	GGWCC	1 cut(s)	90
EcoO109I	RGGNCCY	1 cut(s)	90
FaeI	CATG	1 cut(s)	443
FaiI	YATR	9 cut(s)	11, 96, 146, 236, 270, 369, 441, 756, 806
FaqI	GGGAC	1 cut(s)	103
FatI	CATG	1 cut(s)	439
Fnu4HI	GCNGC	1 cut(s)	140
Fsp4HI	GCNGC	1 cut(s)	140
GlaI	GCGC	1 cut(s)	109
GluI	GCNGC	1 cut(s)	140
GsuI	CTGGAG	2 cut(s)	519, 684
HaeIII	GGCC	2 cut(s)	211, 551
HapII	CCGG	2 cut(s)	384, 659
HhaI	GCGC	1 cut(s)	110
Hin1II	CATG	1 cut(s)	443
Hin6I	GCGC	1 cut(s)	108
HinP1I	GCGC	1 cut(s)	108
HinfI	GANTC	6 cut(s)	227, 318, 475, 655, 791, 800
HpaII	CCGG	2 cut(s)	384, 659
HphI	GGTGA	1 cut(s)	398
Hpy188I	TCNGA	6 cut(s)	232, 353, 525, 606, 811, 822
Hpy188III	TCNNGA	2 cut(s)	377, 686
Hpy99I	CGWCG	1 cut(s)	799
HpyCH4III	ACNGT	3 cut(s)	246, 680, 763
HpyCH4IV	ACGT	1 cut(s)	52
HpyCH4V	TGCA	1 cut(s)	592
HpyF3I	CTNAG	3 cut(s)	66, 705, 717
HpySE526I	ACGT	1 cut(s)	52
Hsp92II	CATG	1 cut(s)	443
HspAI	GCGC	1 cut(s)	108
Kzo9I	GATC	1 cut(s)	166
LguI	GCTCTTC	1 cut(s)	623
LmnI	GCTCC	2 cut(s)	136, 811
Lsp1109I	GCAGC	1 cut(s)	151
LweI	GCATC	2 cut(s)	127, 166
MaeII	ACGT	1 cut(s)	52
MaeIII	GTNAC	1 cut(s)	301
MalI	GATC	1 cut(s)	168
MboI	GATC	1 cut(s)	166
MboII	GAAGA	4 cut(s)	92, 335, 640, 703
MfeI	CAATTG	2 cut(s)	258, 428
MflI	RGATCY	1 cut(s)	166
MlsI	TGGCCA	1 cut(s)	551
MluCI	AATT	6 cut(s)	24, 125, 258, 326, 428, 587
MluNI	TGGCCA	1 cut(s)	551
MlyI	GAGTC	4 cut(s)	221, 327, 649, 809
MmeI	TCCRAC	2 cut(s)	51, 428
MnlI	CCTC	7 cut(s)	49, 199, 447, 494, 498, 759, 828
Mox20I	TGGCCA	1 cut(s)	551
MroXI	GAANNNNTTC	2 cut(s)	245, 411
MscI	TGGCCA	1 cut(s)	551
MseI	TTAA	3 cut(s)	291, 468, 612
Msp20I	TGGCCA	1 cut(s)	551
MspA1I	CMGCKG	1 cut(s)	704
MspI	CCGG	2 cut(s)	384, 659
MunI	CAATTG	2 cut(s)	258, 428
NdeII	GATC	1 cut(s)	166
NlaIII	CATG	1 cut(s)	443
NlaIV	GGNNCC	3 cut(s)	91, 168, 210
NspV	TTCGAA	1 cut(s)	478
PciSI	GCTCTTC	1 cut(s)	623
PdmI	GAANNNNTTC	2 cut(s)	245, 411
PfeI	GAWTC	2 cut(s)	475, 791
PflFI	GACNNNGTC	1 cut(s)	799
PinAI	ACCGGT	1 cut(s)	383
PkrI	GCNGC	1 cut(s)	141
PleI	GAGTC	4 cut(s)	221, 326, 649, 808
PpsI	GAGTC	4 cut(s)	221, 326, 649, 808
PpuMI	RGGWCCY	1 cut(s)	90
PshBI	ATTAAT	2 cut(s)	291, 612
Psp5II	RGGWCCY	1 cut(s)	90
PspN4I	GGNNCC	3 cut(s)	91, 168, 210
PspPI	GGNCC	2 cut(s)	90, 209
PspPPI	RGGWCCY	1 cut(s)	90
PsuI	RGATCY	1 cut(s)	166
PsyI	GACNNNGTC	1 cut(s)	799
PvuII	CAGCTG	1 cut(s)	704
SapI	GCTCTTC	1 cut(s)	623
SaqAI	TTAA	3 cut(s)	291, 468, 612
SatI	GCNGC	1 cut(s)	140
Sau3AI	GATC	1 cut(s)	166
Sau96I	GGNCC	2 cut(s)	90, 209
SchI	GAGTC	4 cut(s)	221, 327, 649, 809
SetI	ASST	7 cut(s)	55, 95, 509, 597, 602, 706, 816
SfaNI	GCATC	2 cut(s)	127, 166
SfuI	TTCGAA	1 cut(s)	478
SinI	GGWCC	1 cut(s)	90
SmlI	CTYRAG	2 cut(s)	377, 686
SmoI	CTYRAG	2 cut(s)	377, 686
Sse9I	AATT	6 cut(s)	24, 125, 258, 326, 428, 587
SspI	AATATT	2 cut(s)	289, 610
TaaI	ACNGT	3 cut(s)	246, 680, 763
TaiI	ACGT	1 cut(s)	55
TaqI	TCGA	5 cut(s)	121, 239, 321, 478, 794
TasI	AATT	6 cut(s)	24, 125, 258, 326, 428, 587
TfiI	GAWTC	2 cut(s)	475, 791
Tru1I	TTAA	3 cut(s)	291, 468, 612
Tru9I	TTAA	3 cut(s)	291, 468, 612
TscAI	CASTG	1 cut(s)	685
TseI	GCWGC	1 cut(s)	139
TspDTI	ATGAA	2 cut(s)	26, 165
TspGWI	ACGGA	1 cut(s)	812
TspRI	CASTG	1 cut(s)	685
Tth111I	GACNNNGTC	1 cut(s)	799
VpaK11BI	GGWCC	1 cut(s)	90
VspI	ATTAAT	2 cut(s)	291, 612
XmnI	GAANNNNTTC	2 cut(s)	245, 411

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.