Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4B

Orthogroup ID

OG0001411

Physical Location & Seq

Genomic Coordinates Reverse (-)

24902766 .. 24906993

Gene Structure 4228 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4BG140400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 405 bp

ATGAAAACAGAAAAACTGGCCAATCGGTCATCAAGGCCCAGATTTAGGACACTTTTGGCCAAGAAAGGGGCAGATTTGGTGGTTTGTGGTGTTGAATTGCAGGTCAGCTTTCTGAATATTAATGGTTTCGGTTTGAAGAGCAGTAAGAAACCCAAATCAAAGACTCCAGCAAAGAAGCCCAAAGACAGTGTTCTTGAGCAGAAATCTCCAGCTGAGTTCTTTGCTGAGAACAAGAACATTGCTGGATTTGGTAATCCAGGGAAATGTCTTTATACTACTGTGAGGGAACTTGTGGAGAACTCATTTGATTCGACGGAGTCCATATCGGAGCTTCCTCTGATAGAAATCACAATACACAGCAAGCCGCACGTCTCTCTTCGATCTGTTATCTCTTCGTGTCTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000902 GO:0003674 GO:0003735 GO:0003824 GO:0003916 GO:0003918 GO:0005198 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006412 GO:0006518 GO:0006725 GO:0006807 GO:0007049 GO:0007275 GO:0007389 GO:0008094 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009330 GO:0009653 GO:0009719 GO:0009725 GO:0009741 GO:0009888 GO:0009987 GO:0010026 GO:0010033 GO:0010467 GO:0014070 GO:0015935 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016853 GO:0016887 GO:0017111 GO:0019538 GO:0022402 GO:0022613 GO:0030154 GO:0032501 GO:0032502 GO:0032989 GO:0032991 GO:0033993 GO:0034641 GO:0034645 GO:0042023 GO:0042221 GO:0042254 GO:0042623 GO:0042802 GO:0042803 GO:0043043 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043603 GO:0043604 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044446 GO:0044464 GO:0044786 GO:0046483 GO:0046983 GO:0048856 GO:0048869 GO:0050896 GO:0061505 GO:0071704 GO:0071840 GO:0090304 GO:0090558 GO:0140097 GO:1901360 GO:1901564 GO:1901566 GO:1901576 GO:1901700 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HATPase_c HATPase_c_3 Topo-VIb_trans

Protein Analysis

134

Amino Acids

14.74

Weight (kDa)

9.68

Isoelectric Point (pI)

56.16

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001411)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0372821 RchiOBHm_Chr2g0120391 RchiOBHm_Chr3g0472751 RchiOBHm_Chr5g0036011 RchiOBHm_Chr6g0269661 RchiOBHm_Chr7g0231021
rosa_laevigata	RLG00000000534 RLG00000003816
rosa_multiflora	Rmu_sc0000084.1_g000050 Rmu_sc0001493.1_g000009 Rmu_sc0001851.1_g000026 Rmu_sc0003198.1_g000001 Rmu_sc0003198.1_g000002 Rmu_sc0004226.1_g000003 Rmu_sc0005738.1_g000004 Rmu_sc0006380.1_g000004 Rmu_sc0012041.1_g000003 Rmu_sc0017397.1_g000001
rosa_roxburghii	Rroxscaffold_4G00313360
rosa_rugosa	Rorug03G0325800 Rorug04G0073800 Rorug06G0052600
rosa_samantha	Rh1CG021400 Rh2CG235800 Rh2DG107900 Rh3AG180200 Rh3BG065800 Rh3BG206400 Rh3CG064500 Rh3CG203500 Rh3CG221800 Rh3CG270900 Rh3DG065700 Rh3DG132500 Rh3DG266800 Rh4AG242700 Rh4BG140300 Rh4BG140400 Rh4CG033900 Rh5AG093800 Rh5BG377400 Rh5BG426700 Rh5DG440600 Rh6AG048200 Rh6AG074100 Rh6AG148600 Rh6AG196800 Rh6AG406100 Rh7AG362100 Rh7BG138700 Rh7CG380700 Rh7DG335500
rosa_wichuraiana	Rw3G013510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	91
AciI	CCGC	1 cut(s)	365
AcoI	YGGCCR	2 cut(s)	18, 57
AfiI	CCNNNNNNNGG	2 cut(s)	45, 66
AgsI	TTSAA	2 cut(s)	95, 136
AjiI	CACGTC	1 cut(s)	370
AjnI	CCWGG	1 cut(s)	256
AluBI	AGCT	3 cut(s)	108, 212, 331
AluI	AGCT	3 cut(s)	108, 212, 331
Alw26I	GTCTC	1 cut(s)	376
AoxI	GGCC	3 cut(s)	18, 35, 57
AseI	ATTAAT	1 cut(s)	120
AspS9I	GGNCC	1 cut(s)	36
BalI	TGGCCA	2 cut(s)	20, 59
BciT130I	CCWGG	1 cut(s)	258
BcoDI	GTCTC	1 cut(s)	376
BfuAI	ACCTGC	1 cut(s)	91
BisI	GCNGC	1 cut(s)	365
BlsI	GCNGC	1 cut(s)	366
Bme1390I	CCNGG	1 cut(s)	258
BmgBI	CACGTC	1 cut(s)	370
BmgT120I	GGNCC	1 cut(s)	36
BmrFI	CCNGG	1 cut(s)	258
BpmI	CTGGAG	2 cut(s)	150, 192
BpuEI	CTTGAG	1 cut(s)	215
BsaBI	GATNNNNATC	1 cut(s)	344
BsaJI	CCNNGG	1 cut(s)	257
Bsc4I	CCNNNNNNNGG	2 cut(s)	45, 66
Bse1I	ACTGG	1 cut(s)	21
Bse3DI	GCAATG	1 cut(s)	237
Bse8I	GATNNNNATC	1 cut(s)	344
BseBI	CCWGG	1 cut(s)	258
BseDI	CCNNGG	1 cut(s)	257
BseJI	GATNNNNATC	1 cut(s)	344
BseLI	CCNNNNNNNGG	2 cut(s)	45, 66
BseMI	GCAATG	1 cut(s)	237
BseMII	CTCAG	2 cut(s)	204, 216
BseNI	ACTGG	1 cut(s)	21
BshFI	GGCC	3 cut(s)	20, 37, 59
BslI	CCNNNNNNNGG	2 cut(s)	45, 66
BsmAI	GTCTC	1 cut(s)	376
BsmBI	CGTCTC	1 cut(s)	376
BsnI	GGCC	3 cut(s)	20, 37, 59
Bsp143I	GATC	1 cut(s)	380
BspACI	CCGC	1 cut(s)	365
BspANI	GGCC	3 cut(s)	20, 37, 59
BspCNI	CTCAG	2 cut(s)	205, 217
BspMI	ACCTGC	1 cut(s)	91
BspQI	GCTCTTC	1 cut(s)	131
BsrDI	GCAATG	1 cut(s)	237
BsrI	ACTGG	1 cut(s)	21
BssECI	CCNNGG	1 cut(s)	257
BssMI	GATC	1 cut(s)	380
Bst2UI	CCWGG	1 cut(s)	258
Bst4CI	ACNGT	2 cut(s)	188, 280
Bst6I	CTCTTC	3 cut(s)	131, 381, 397
BstC8I	GCNNGC	1 cut(s)	362
BstDEI	CTNAG	2 cut(s)	213, 225
BstKTI	GATC	1 cut(s)	383
BstMAI	GTCTC	1 cut(s)	376
BstMBI	GATC	1 cut(s)	380
BstNI	CCWGG	1 cut(s)	258
BstSCI	CCNGG	1 cut(s)	256
BsuRI	GGCC	3 cut(s)	20, 37, 59
BtrI	CACGTC	1 cut(s)	370
BtsIMutI	CAGTG	1 cut(s)	193
BveI	ACCTGC	1 cut(s)	91
Cac8I	GCNNGC	1 cut(s)	362
Cfr13I	GGNCC	1 cut(s)	36
CviJI	RGCY	8 cut(s)	20, 37, 59, 108, 178, 212, 331, 364
CviKI_1	RGCY	8 cut(s)	20, 37, 59, 108, 178, 212, 331, 364
DdeI	CTNAG	2 cut(s)	213, 225
DpnI	GATC	1 cut(s)	382
DpnII	GATC	1 cut(s)	380
EaeI	YGGCCR	2 cut(s)	18, 57
Eam1104I	CTCTTC	3 cut(s)	131, 381, 397
EarI	CTCTTC	3 cut(s)	131, 381, 397
EcoRII	CCWGG	1 cut(s)	256
Esp3I	CGTCTC	1 cut(s)	376
FaiI	YATR	2 cut(s)	273, 323
Fnu4HI	GCNGC	1 cut(s)	365
Fsp4HI	GCNGC	1 cut(s)	365
GluI	GCNGC	1 cut(s)	365
GsuI	CTGGAG	2 cut(s)	150, 192
HaeIII	GGCC	3 cut(s)	20, 37, 59
HinfI	GANTC	3 cut(s)	163, 308, 317
Hpy188I	TCNGA	4 cut(s)	114, 328, 339, 404
Hpy188III	TCNNGA	1 cut(s)	194
Hpy99I	CGWCG	1 cut(s)	316
HpyCH4III	ACNGT	2 cut(s)	188, 280
HpyCH4IV	ACGT	1 cut(s)	369
HpyCH4V	TGCA	1 cut(s)	100
HpyF3I	CTNAG	2 cut(s)	213, 225
HpySE526I	ACGT	1 cut(s)	369
Kzo9I	GATC	1 cut(s)	380
LguI	GCTCTTC	1 cut(s)	131
LmnI	GCTCC	1 cut(s)	328
LpnPI	CCDG	8 cut(s)	2, 52, 86, 180, 222, 228, 243, 270
MaeII	ACGT	1 cut(s)	369
MalI	GATC	1 cut(s)	382
MboI	GATC	1 cut(s)	380
MboII	GAAGA	3 cut(s)	148, 368, 384
MlsI	TGGCCA	2 cut(s)	20, 59
MluCI	AATT	1 cut(s)	95
MluNI	TGGCCA	2 cut(s)	20, 59
MlyI	GAGTC	2 cut(s)	157, 326
MnlI	CCTC	2 cut(s)	276, 345
Mox20I	TGGCCA	2 cut(s)	20, 59
MscI	TGGCCA	2 cut(s)	20, 59
MseI	TTAA	1 cut(s)	120
Msp20I	TGGCCA	2 cut(s)	20, 59
MspA1I	CMGCKG	1 cut(s)	212
MspR9I	CCNGG	1 cut(s)	258
MvaI	CCWGG	1 cut(s)	258
NdeII	GATC	1 cut(s)	380
PciSI	GCTCTTC	1 cut(s)	131
PfeI	GAWTC	1 cut(s)	308
PflFI	GACNNNGTC	1 cut(s)	316
PkrI	GCNGC	1 cut(s)	366
PleI	GAGTC	2 cut(s)	157, 325
PpsI	GAGTC	2 cut(s)	157, 325
PshBI	ATTAAT	1 cut(s)	120
Psp6I	CCWGG	1 cut(s)	256
PspGI	CCWGG	1 cut(s)	256
PspPI	GGNCC	1 cut(s)	36
PsyI	GACNNNGTC	1 cut(s)	316
PvuII	CAGCTG	1 cut(s)	212
SapI	GCTCTTC	1 cut(s)	131
SaqAI	TTAA	1 cut(s)	120
SatI	GCNGC	1 cut(s)	365
Sau3AI	GATC	1 cut(s)	380
Sau96I	GGNCC	1 cut(s)	36
SchI	GAGTC	2 cut(s)	157, 326
ScrFI	CCNGG	1 cut(s)	258
SetI	ASST	5 cut(s)	105, 110, 214, 333, 372
SmlI	CTYRAG	1 cut(s)	194
SmoI	CTYRAG	1 cut(s)	194
Sse9I	AATT	1 cut(s)	95
SsiI	CCGC	1 cut(s)	365
SspI	AATATT	1 cut(s)	118
StyD4I	CCNGG	1 cut(s)	256
TaaI	ACNGT	2 cut(s)	188, 280
TaiI	ACGT	1 cut(s)	372
TaqI	TCGA	2 cut(s)	311, 379
TaqII	GACCGA	1 cut(s)	15
TasI	AATT	1 cut(s)	95
TauI	GCSGC	1 cut(s)	367
TfiI	GAWTC	1 cut(s)	308
Tru1I	TTAA	1 cut(s)	120
Tru9I	TTAA	1 cut(s)	120
TscAI	CASTG	1 cut(s)	193
TspDTI	ATGAA	1 cut(s)	17
TspGWI	ACGGA	1 cut(s)	329
TspRI	CASTG	1 cut(s)	193
Tth111I	GACNNNGTC	1 cut(s)	316
VspI	ATTAAT	1 cut(s)	120

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.