RchiOBHm_Chr2g0120391

No description available

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
Physical Location & Seq
Reverse (-)
33107212 .. 33107952
741 bp
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UTR
Exon/CDS
Intron
PRQ49301

Sequence Viewer

Length: 231 bp
ATGGAGAAGCATATCAAGACACTCATTGTCCTATCTCACTACTTGGAGGTGCAGTCTTTTTCCTCTCCATTGTCCACCATACTAAGCAAGCTCAAGAGTCAAGACTCCACAACTCCCAAAAGGTTCTTATTTTGGCAAGGACAAATCATTGGAGTTCATGCAGCTCTGCATCTATTTAAGGTTGATAGAACATACCTAATGACAAGTATAGTAGTTACGTTACATTTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

76

Amino Acids

8.76

Weight (kDa)

9.78

Isoelectric Point (pI)

35.44

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AluBI AGCT 2 cut(s) 91, 164
AluI AGCT 2 cut(s) 91, 164
ApeKI GCWGC 1 cut(s) 161
BbvI GCAGC 1 cut(s) 173
BisI GCNGC 1 cut(s) 162
BlsI GCNGC 1 cut(s) 163
BmsI GCATC 1 cut(s) 178
BpuEI CTTGAG 1 cut(s) 77
BsaXI ACNNNNNCTCC 2 cut(s) 38, 68
BseXI GCAGC 1 cut(s) 173
BsgI GTGCAG 1 cut(s) 71
BstC8I GCNNGC 1 cut(s) 89
BstDEI CTNAG 1 cut(s) 83
BstV1I GCAGC 1 cut(s) 173
Cac8I GCNNGC 1 cut(s) 89
CviAII CATG 1 cut(s) 158
CviJI RGCY 2 cut(s) 91, 164
CviKI_1 RGCY 2 cut(s) 91, 164
DdeI CTNAG 1 cut(s) 83
FaeI CATG 1 cut(s) 161
FaiI YATR 5 cut(s) 12, 80, 159, 193, 209
FatI CATG 1 cut(s) 157
Fnu4HI GCNGC 1 cut(s) 162
Fsp4HI GCNGC 1 cut(s) 162
GluI GCNGC 1 cut(s) 162
Hin1II CATG 1 cut(s) 161
HinfI GANTC 2 cut(s) 97, 104
Hpy166II GTNNAC 1 cut(s) 75
Hpy188III TCNNGA 3 cut(s) 16, 94, 101
Hpy8I GTNNAC 1 cut(s) 75
HpyCH4IV ACGT 1 cut(s) 218
HpyCH4V TGCA 3 cut(s) 52, 161, 169
HpyF3I CTNAG 1 cut(s) 83
HpySE526I ACGT 1 cut(s) 218
Hsp92II CATG 1 cut(s) 161
Lsp1109I GCAGC 1 cut(s) 173
LweI GCATC 1 cut(s) 178
MaeII ACGT 1 cut(s) 218
MaeIII GTNAC 2 cut(s) 214, 219
MlyI GAGTC 2 cut(s) 98, 106
MnlI CCTC 2 cut(s) 40, 73
MseI TTAA 2 cut(s) 177, 229
NlaIII CATG 1 cut(s) 161
PkrI GCNGC 1 cut(s) 163
PleI GAGTC 2 cut(s) 98, 105
PpsI GAGTC 2 cut(s) 98, 105
SaqAI TTAA 2 cut(s) 177, 229
SatI GCNGC 1 cut(s) 162
SchI GAGTC 2 cut(s) 98, 106
SetI ASST 7 cut(s) 51, 93, 125, 166, 183, 198, 221
SfaNI GCATC 1 cut(s) 178
SgeI CNNG 8 cut(s) 28, 55, 100, 106, 113, 149, 170, 216
SmlI CTYRAG 1 cut(s) 92
SmoI CTYRAG 1 cut(s) 92
TaiI ACGT 1 cut(s) 221
Tru1I TTAA 2 cut(s) 177, 229
Tru9I TTAA 2 cut(s) 177, 229
TseI GCWGC 1 cut(s) 161
TspDTI ATGAA 1 cut(s) 146
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.