Rh3DG132500

No description available

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3D
Physical Location & Seq
Reverse (-)
11285514 .. 11287168
1655 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3DG132500.1

Sequence Viewer

Length: 276 bp
ATGGTGCCAATACGTTGTCATCTTGAGGTGAGGGAGCTGGTGTCTCTACGGGTGCCGAGGCCGGTAAGTTGTCATCTTGAGGTGGGGGAGCTGGTGTCTCTCCGGGTGCCGAAGCCGGCACGTTCTCATCTTGAGGTGAGGGAGCTGGTGCTGAAGATGGTGGAGGTGGCGAAGGGGAGTCAGGTTGGGAAGAAACTCATAGCAGAAGAAATATCCAACACCTCAATATACTCACAGCTTGCATCAGACACTTATGCAATATCCTCATGGGCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

91

Amino Acids

10.13

Weight (kDa)

8.71

Isoelectric Point (pI)

47.48

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 3 cut(s) 4, 52, 106
AcuI CTGAAG 1 cut(s) 173
AluBI AGCT 4 cut(s) 37, 91, 145, 238
AluI AGCT 4 cut(s) 37, 91, 145, 238
Alw26I GTCTC 2 cut(s) 48, 102
AoxI GGCC 1 cut(s) 59
AsuC2I CCSGG 1 cut(s) 104
AsuHPI GGTGA 2 cut(s) 40, 148
BanI GGYRCC 3 cut(s) 4, 52, 106
BccI CCATC 1 cut(s) 151
BcnI CCSGG 1 cut(s) 104
BcoDI GTCTC 2 cut(s) 48, 102
Bme1390I CCNGG 1 cut(s) 104
BmiI GGNNCC 3 cut(s) 6, 54, 108
BmrFI CCNGG 1 cut(s) 104
BmsI GCATC 1 cut(s) 251
BpuEI CTTGAG 3 cut(s) 44, 98, 152
BpuMI CCSGG 1 cut(s) 104
BsaJI CCNNGG 1 cut(s) 56
BsaXI ACNNNNNCTCC 4 cut(s) 26, 56, 80, 110
Bse118I RCCGGY 2 cut(s) 61, 115
BseDI CCNNGG 1 cut(s) 56
BshFI GGCC 1 cut(s) 61
BshNI GGYRCC 3 cut(s) 4, 52, 106
BsiSI CCGG 3 cut(s) 62, 103, 116
BsmAI GTCTC 2 cut(s) 48, 102
BsnI GGCC 1 cut(s) 61
BspANI GGCC 1 cut(s) 61
BspLI GGNNCC 3 cut(s) 6, 54, 108
BspT107I GGYRCC 3 cut(s) 4, 52, 106
BsrFI RCCGGY 2 cut(s) 61, 115
BssAI RCCGGY 2 cut(s) 61, 115
BssECI CCNNGG 1 cut(s) 56
BstC8I GCNNGC 2 cut(s) 117, 240
BstMAI GTCTC 2 cut(s) 48, 102
BstSCI CCNGG 1 cut(s) 102
BsuRI GGCC 1 cut(s) 61
Cac8I GCNNGC 2 cut(s) 117, 240
Cfr10I RCCGGY 2 cut(s) 61, 115
CviAII CATG 1 cut(s) 267
CviJI RGCY 6 cut(s) 37, 61, 91, 115, 145, 238
CviKI_1 RGCY 6 cut(s) 37, 61, 91, 115, 145, 238
Eco57I CTGAAG 1 cut(s) 173
FaeI CATG 1 cut(s) 270
FaiI YATR 5 cut(s) 200, 229, 255, 268, 274
FatI CATG 1 cut(s) 266
HaeIII GGCC 1 cut(s) 61
HapII CCGG 3 cut(s) 62, 103, 116
Hin1II CATG 1 cut(s) 270
HinfI GANTC 1 cut(s) 178
HpaII CCGG 3 cut(s) 62, 103, 116
HphI GGTGA 2 cut(s) 40, 148
Hpy188I TCNGA 1 cut(s) 247
Hpy188III TCNNGA 3 cut(s) 23, 77, 131
HpyAV CCTTC 1 cut(s) 166
HpyCH4IV ACGT 2 cut(s) 13, 121
HpyCH4V TGCA 2 cut(s) 242, 257
HpySE526I ACGT 2 cut(s) 13, 121
Hsp92II CATG 1 cut(s) 270
KroI GCCGGC 1 cut(s) 115
KroNI GCCGGC 1 cut(s) 117
LmnI GCTCC 3 cut(s) 34, 88, 142
LpnPI CCDG 7 cut(s) 23, 75, 77, 116, 129, 131, 167
LweI GCATC 1 cut(s) 251
MaeII ACGT 2 cut(s) 13, 121
MboII GAAGA 3 cut(s) 166, 202, 218
MlyI GAGTC 1 cut(s) 187
MmeI TCCRAC 1 cut(s) 240
MnlI CCTC 9 cut(s) 19, 24, 51, 73, 127, 132, 157, 232, 274
MroNI GCCGGC 1 cut(s) 115
MspI CCGG 3 cut(s) 62, 103, 116
MspR9I CCNGG 1 cut(s) 104
NaeI GCCGGC 1 cut(s) 117
NciI CCSGG 1 cut(s) 104
NgoMIV GCCGGC 1 cut(s) 115
NlaIII CATG 1 cut(s) 270
NlaIV GGNNCC 3 cut(s) 6, 54, 108
NmeAIII GCCGAG 1 cut(s) 81
PdiI GCCGGC 1 cut(s) 117
PleI GAGTC 1 cut(s) 186
PpsI GAGTC 1 cut(s) 186
PspN4I GGNNCC 3 cut(s) 6, 54, 108
SchI GAGTC 1 cut(s) 187
ScrFI CCNGG 1 cut(s) 104
SfaNI GCATC 1 cut(s) 251
SmlI CTYRAG 3 cut(s) 23, 77, 131
SmoI CTYRAG 3 cut(s) 23, 77, 131
StyD4I CCNGG 1 cut(s) 102
TaiI ACGT 2 cut(s) 16, 124
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.