Rh6AG148600

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0001411
Physical Location & Seq
Forward (+)
23406090 .. 23406392
303 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG148600.1

Sequence Viewer

Length: 303 bp
ATGTGGTCCATGAAGGCGCCAGAGGCTAGCGTTAGTGGAGTTATACAGGTTCGTGAGGAAGAGATTGAGTTAGTAGAGGGTCTGACCGAAAGGGAGGAAAGGAAGAAAGGGTTCATTGAATTATGTTCTGCTACGAAGCGTCGAAAGCTTATTTGGGAAAACCCAATGGAAGAGGTGGCAATGACTGACTCTACTCCTCATAGTTCTCGGATTGGGGATGAGGATAGTAGAATGGTGCAAGAGGCGGAACAAGATGGTCTAGTCTTGTTTGATGTCCCAGTCACGTCGGGTAGCTTTGGATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

100

Amino Acids

11.26

Weight (kDa)

4.58

Isoelectric Point (pI)

66.02

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 16
AciI CCGC 1 cut(s) 245
AcyI GRCGYC 1 cut(s) 17
AgsI TTSAA 1 cut(s) 119
AjiI CACGTC 1 cut(s) 285
AjuI GAANNNNNNNTTGG 2 cut(s) 136, 168
AluBI AGCT 2 cut(s) 148, 294
AluI AGCT 2 cut(s) 148, 294
Asp700I GAANNNNTTC 1 cut(s) 110
AspLEI GCGC 1 cut(s) 19
AspS9I GGNCC 1 cut(s) 6
AsuNHI GCTAGC 1 cut(s) 26
AvaII GGWCC 1 cut(s) 6
BanI GGYRCC 1 cut(s) 16
BccI CCATC 1 cut(s) 248
BfaI CTAG 2 cut(s) 27, 260
BfoI RGCGCY 1 cut(s) 20
Bme18I GGWCC 1 cut(s) 6
BmgBI CACGTC 1 cut(s) 285
BmgT120I GGNCC 1 cut(s) 6
BmiI GGNNCC 1 cut(s) 18
BmrI ACTGGG 1 cut(s) 272
BmtI GCTAGC 1 cut(s) 30
BmuI ACTGGG 1 cut(s) 272
BsaHI GRCGYC 1 cut(s) 17
Bse1I ACTGG 1 cut(s) 278
Bse3DI GCAATG 1 cut(s) 186
BseGI GGATG 1 cut(s) 223
BseMI GCAATG 1 cut(s) 186
BseNI ACTGG 1 cut(s) 278
BseRI GAGGAG 1 cut(s) 186
BshNI GGYRCC 1 cut(s) 16
BslFI GGGAC 1 cut(s) 260
BsmFI GGGAC 1 cut(s) 260
BspACI CCGC 1 cut(s) 245
BspLI GGNNCC 1 cut(s) 18
BspOI GCTAGC 1 cut(s) 30
BspT107I GGYRCC 1 cut(s) 16
BsrDI GCAATG 1 cut(s) 186
BsrI ACTGG 1 cut(s) 278
BssNI GRCGYC 1 cut(s) 17
Bst6I CTCTTC 2 cut(s) 54, 165
BstACI GRCGYC 1 cut(s) 17
BstC8I GCNNGC 1 cut(s) 28
BstF5I GGATG 1 cut(s) 223
BstH2I RGCGCY 1 cut(s) 20
BstHHI GCGC 1 cut(s) 19
BstMWI GCNNNNNNNGC 2 cut(s) 23, 145
BtrI CACGTC 1 cut(s) 285
BtsCI GGATG 1 cut(s) 223
Cac8I GCNNGC 1 cut(s) 28
CfoI GCGC 1 cut(s) 19
Cfr13I GGNCC 1 cut(s) 6
CseI GACGC 1 cut(s) 128
CviAII CATG 1 cut(s) 10
CviJI RGCY 3 cut(s) 26, 148, 294
CviKI_1 RGCY 3 cut(s) 26, 148, 294
DinI GGCGCC 1 cut(s) 18
Eam1104I CTCTTC 2 cut(s) 54, 165
EarI CTCTTC 2 cut(s) 54, 165
EciI GGCGGA 1 cut(s) 260
Eco47I GGWCC 1 cut(s) 6
EgeI GGCGCC 1 cut(s) 18
EheI GGCGCC 1 cut(s) 18
FaeI CATG 1 cut(s) 13
FaiI YATR 4 cut(s) 11, 44, 124, 201
FaqI GGGAC 1 cut(s) 260
FatI CATG 1 cut(s) 9
FokI GGATG 1 cut(s) 230
FspBI CTAG 2 cut(s) 27, 260
GlaI GCGC 1 cut(s) 18
HaeII RGCGCY 1 cut(s) 20
HgaI GACGC 1 cut(s) 128
HhaI GCGC 1 cut(s) 19
Hin1I GRCGYC 1 cut(s) 17
Hin1II CATG 1 cut(s) 13
Hin6I GCGC 1 cut(s) 17
HinP1I GCGC 1 cut(s) 17
HindIII AAGCTT 1 cut(s) 146
HinfI GANTC 1 cut(s) 188
Hpy188I TCNGA 2 cut(s) 84, 210
Hpy188III TCNNGA 1 cut(s) 53
Hpy99I CGWCG 2 cut(s) 144, 289
HpyAV CCTTC 1 cut(s) 7
HpyCH4IV ACGT 1 cut(s) 284
HpyCH4V TGCA 1 cut(s) 238
HpyF10VI GCNNNNNNNGC 2 cut(s) 23, 145
HpySE526I ACGT 1 cut(s) 284
Hsp92I GRCGYC 1 cut(s) 17
Hsp92II CATG 1 cut(s) 13
HspAI GCGC 1 cut(s) 17
KasI GGCGCC 1 cut(s) 16
LpnPI CCDG 3 cut(s) 32, 33, 291
MaeI CTAG 2 cut(s) 27, 260
MaeII ACGT 1 cut(s) 284
MaeIII GTNAC 1 cut(s) 280
MboII GAAGA 3 cut(s) 71, 115, 182
MluCI AATT 1 cut(s) 119
Mly113I GGCGCC 1 cut(s) 17
MlyI GAGTC 1 cut(s) 182
MnlI CCTC 8 cut(s) 16, 49, 70, 88, 166, 207, 214, 235
MroXI GAANNNNTTC 1 cut(s) 110
MwoI GCNNNNNNNGC 2 cut(s) 23, 145
NarI GGCGCC 1 cut(s) 17
NheI GCTAGC 1 cut(s) 26
NlaIII CATG 1 cut(s) 13
NlaIV GGNNCC 1 cut(s) 18
NmuCI GTSAC 1 cut(s) 280
PdmI GAANNNNTTC 1 cut(s) 110
PleI GAGTC 1 cut(s) 182
PluTI GGCGCC 1 cut(s) 20
PpsI GAGTC 1 cut(s) 182
PspN4I GGNNCC 1 cut(s) 18
PspPI GGNCC 1 cut(s) 6
Sau96I GGNCC 1 cut(s) 6
SchI GAGTC 1 cut(s) 182
SetI ASST 5 cut(s) 51, 150, 177, 287, 296
SfoI GGCGCC 1 cut(s) 18
SinI GGWCC 1 cut(s) 6
Sse9I AATT 1 cut(s) 119
SsiI CCGC 1 cut(s) 245
SspDI GGCGCC 1 cut(s) 16
SspMI CTAG 2 cut(s) 27, 260
TaiI ACGT 1 cut(s) 287
TaqI TCGA 1 cut(s) 142
TaqII GACCGA 1 cut(s) 101
TasI AATT 1 cut(s) 119
TseFI GTSAC 1 cut(s) 280
Tsp45I GTSAC 1 cut(s) 280
TspDTI ATGAA 2 cut(s) 26, 103
VpaK11BI GGWCC 1 cut(s) 6
XmnI GAANNNNTTC 1 cut(s) 110
XspI CTAG 2 cut(s) 27, 260
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.