RLG00000001369

domain in TBC and LysM domain containing proteins

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0001198
Physical Location & Seq
Reverse (-)
14742846 .. 14745044
2199 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000001369

Sequence Viewer

Length: 678 bp
ATGGGCAACGCTCAGTCACCTCCTCATGGAGATCCTCGCTTTGCTTCAGCCTCCAGAGCTTTCACTCATATTGAGCTTGAAGATCTCAAGTCCCTACTTGAGTCCTTGGATGCTCAGTCACACAATGACGGCCAATTTAGCTCTCCCTCAACTTATTTGGGGCTTCATGGTCCTCTTGGGGATAAGATGTTTGATTTAGTAACCCAGCAGCGGAAAGACCAGAAGCTCACATTTGAAGACCTAGTGGTAGCCAAAACTTACATTGATTGTCTGCATATAAAAAAGTCTGACAAGTCTAGAATGCTGGCGGAGGCTCAGACGGAAGTTGAGAATTCCTTGGGTGGAAATTCAGAAGAGATTCTTTTTTATAAGAAGAGGCTAGACACCTCGGTCGAATTCCGCATTGGCGCTAGTTGCCCTAATAATTGTTGGCTAATGTGGCTACAACTTCCGGGACTTCTCTCTTTGTCCACCAAGTTGGTGCCAACTATCATGAACATGATGAAGAGATTAGCAGATGAAGGGGCAGCAGCTACTGCAGATAACAATCCTCAAAGAAACCCTGCAGTAGCATTAAAGAGCATAAGCAATGGAGCAAATGCTAGCAGTTCCATGTCATCTACTGCCTCATCAGAAGTGACGGAATCTAAATACTCTAGTCCTTCAAAACAAGACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TLD

Protein Analysis

226

Amino Acids

24.57

Weight (kDa)

5.76

Isoelectric Point (pI)

59.13

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 369
AasI GACNNNNNNGTC 1 cut(s) 389
AccB1I GGYRCC 1 cut(s) 481
AciI CCGC 3 cut(s) 211, 308, 400
AclWI GGATC 1 cut(s) 26
AcoI YGGCCR 1 cut(s) 130
AcsI RAATTY 3 cut(s) 331, 346, 395
AcuI CTGAAG 1 cut(s) 30
AfiI CCNNNNNNNGG 2 cut(s) 26, 210
AgsI TTSAA 3 cut(s) 80, 236, 666
AjuI GAANNNNNNNTTGG 2 cut(s) 387, 419
AluBI AGCT 5 cut(s) 59, 76, 141, 226, 533
AluI AGCT 5 cut(s) 59, 76, 141, 226, 533
AlwI GGATC 1 cut(s) 26
AlwNI CAGNNNCTG 1 cut(s) 536
AoxI GGCC 1 cut(s) 130
ApeKI GCWGC 3 cut(s) 208, 527, 530
ApoI RAATTY 3 cut(s) 331, 346, 395
Asp700I GAANNNNTTC 1 cut(s) 357
AspLEI GCGC 1 cut(s) 410
AspS9I GGNCC 1 cut(s) 170
AsuC2I CCSGG 1 cut(s) 453
AsuHPI GGTGA 1 cut(s) 9
AsuNHI GCTAGC 1 cut(s) 602
AvaII GGWCC 1 cut(s) 170
BanI GGYRCC 1 cut(s) 481
BbsI GAAGAC 1 cut(s) 243
BbvI GCAGC 3 cut(s) 220, 539, 542
BceAI ACGGC 1 cut(s) 145
BcnI CCSGG 1 cut(s) 453
BfaI CTAG 6 cut(s) 242, 297, 380, 411, 603, 657
BfmI CTRYAG 2 cut(s) 537, 564
BfoI RGCGCY 1 cut(s) 411
BglII AGATCT 1 cut(s) 82
BisI GCNGC 3 cut(s) 209, 528, 531
BlsI GCNGC 3 cut(s) 210, 529, 532
Bme1390I CCNGG 1 cut(s) 453
Bme18I GGWCC 1 cut(s) 170
BmgT120I GGNCC 1 cut(s) 170
BmiI GGNNCC 1 cut(s) 483
BmrFI CCNGG 1 cut(s) 453
BmsI GCATC 1 cut(s) 100
BmtI GCTAGC 1 cut(s) 606
BpiI GAAGAC 1 cut(s) 243
BpmI CTGGAG 1 cut(s) 37
BpuEI CTTGAG 2 cut(s) 71, 119
BpuMI CCSGG 1 cut(s) 453
BsaBI GATNNNNATC 1 cut(s) 546
BsaJI CCNNGG 3 cut(s) 105, 336, 387
Bsc4I CCNNNNNNNGG 2 cut(s) 26, 210
Bse3DI GCAATG 1 cut(s) 595
Bse8I GATNNNNATC 1 cut(s) 546
BseDI CCNNGG 3 cut(s) 105, 336, 387
BseGI GGATG 1 cut(s) 115
BseJI GATNNNNATC 1 cut(s) 546
BseLI CCNNNNNNNGG 2 cut(s) 26, 210
BseMI GCAATG 1 cut(s) 595
BseMII CTCAG 3 cut(s) 26, 128, 329
BseRI GAGGAG 1 cut(s) 12
BseXI GCAGC 3 cut(s) 220, 539, 542
BseYI CCCAGC 1 cut(s) 204
Bsh1285I CGRYCG 1 cut(s) 393
BshFI GGCC 1 cut(s) 132
BshNI GGYRCC 1 cut(s) 481
BsiEI CGRYCG 1 cut(s) 393
BsiSI CCGG 1 cut(s) 452
BslFI GGGAC 2 cut(s) 76, 468
BslI CCNNNNNNNGG 2 cut(s) 26, 210
BsmFI GGGAC 2 cut(s) 76, 468
BsmI GAATGC 1 cut(s) 306
BsnI GGCC 1 cut(s) 132
Bsp143I GATC 2 cut(s) 31, 82
BspACI CCGC 3 cut(s) 211, 308, 400
BspANI GGCC 1 cut(s) 132
BspCNI CTCAG 3 cut(s) 25, 127, 328
BspHI TCATGA 1 cut(s) 492
BspLI GGNNCC 1 cut(s) 483
BspMAI CTGCAG 2 cut(s) 541, 568
BspOI GCTAGC 1 cut(s) 606
BspPI GGATC 1 cut(s) 26
BspT107I GGYRCC 1 cut(s) 481
BsrDI GCAATG 1 cut(s) 595
BssECI CCNNGG 3 cut(s) 105, 336, 387
BssMI GATC 2 cut(s) 31, 82
BssT1I CCWWGG 2 cut(s) 105, 336
Bst6I CTCTTC 3 cut(s) 348, 368, 500
BstAPI GCANNNNNTGC 1 cut(s) 536
BstC8I GCNNGC 2 cut(s) 306, 604
BstDEI CTNAG 3 cut(s) 12, 114, 315
BstF5I GGATG 1 cut(s) 115
BstH2I RGCGCY 1 cut(s) 411
BstHHI GCGC 1 cut(s) 410
BstKTI GATC 2 cut(s) 34, 85
BstMBI GATC 2 cut(s) 31, 82
BstMCI CGRYCG 1 cut(s) 393
BstMWI GCNNNNNNNGC 5 cut(s) 56, 138, 414, 439, 536
BstSCI CCNGG 1 cut(s) 451
BstSFI CTRYAG 2 cut(s) 537, 564
BstV1I GCAGC 3 cut(s) 220, 539, 542
BstV2I GAAGAC 1 cut(s) 243
BstX2I RGATCY 2 cut(s) 31, 82
BstXI CCANNNNNNTGG 1 cut(s) 478
BstYI RGATCY 2 cut(s) 31, 82
BsuRI GGCC 1 cut(s) 132
BtsCI GGATG 1 cut(s) 115
Cac8I GCNNGC 2 cut(s) 306, 604
CaiI CAGNNNCTG 1 cut(s) 536
CciI TCATGA 1 cut(s) 492
CfoI GCGC 1 cut(s) 410
Cfr13I GGNCC 1 cut(s) 170
CviAII CATG 5 cut(s) 26, 167, 493, 499, 613
DdeI CTNAG 3 cut(s) 12, 114, 315
DpnI GATC 2 cut(s) 33, 84
DpnII GATC 2 cut(s) 31, 82
DrdI GACNNNNNNGTC 1 cut(s) 389
DseDI GACNNNNNNGTC 1 cut(s) 389
EaeI YGGCCR 1 cut(s) 130
Eam1104I CTCTTC 3 cut(s) 348, 368, 500
EarI CTCTTC 3 cut(s) 348, 368, 500
EciI GGCGGA 1 cut(s) 323
Eco130I CCWWGG 2 cut(s) 105, 336
Eco47I GGWCC 1 cut(s) 170
Eco57I CTGAAG 1 cut(s) 30
EcoRI GAATTC 2 cut(s) 331, 395
EcoT14I CCWWGG 2 cut(s) 105, 336
ErhI CCWWGG 2 cut(s) 105, 336
FaeI CATG 5 cut(s) 29, 170, 496, 502, 616
FalI AAGNNNNNCTT 2 cut(s) 345, 377
FaqI GGGAC 2 cut(s) 76, 468
FatI CATG 5 cut(s) 25, 166, 492, 498, 612
Fnu4HI GCNGC 3 cut(s) 209, 528, 531
FokI GGATG 1 cut(s) 122
Fsp4HI GCNGC 3 cut(s) 209, 528, 531
FspBI CTAG 6 cut(s) 242, 297, 380, 411, 603, 657
GlaI GCGC 1 cut(s) 409
GluI GCNGC 3 cut(s) 209, 528, 531
GsaI CCCAGC 1 cut(s) 208
GsuI CTGGAG 1 cut(s) 37
HaeII RGCGCY 1 cut(s) 411
HaeIII GGCC 1 cut(s) 132
HapII CCGG 1 cut(s) 452
HhaI GCGC 1 cut(s) 410
Hin1II CATG 5 cut(s) 29, 170, 496, 502, 616
Hin6I GCGC 1 cut(s) 408
HinP1I GCGC 1 cut(s) 408
HinfI GANTC 3 cut(s) 101, 358, 644
HpaII CCGG 1 cut(s) 452
HphI GGTGA 1 cut(s) 9
Hpy166II GTNNAC 1 cut(s) 471
Hpy188I TCNGA 4 cut(s) 289, 318, 352, 634
Hpy188III TCNNGA 3 cut(s) 54, 297, 493
Hpy8I GTNNAC 1 cut(s) 471
HpyAV CCTTC 2 cut(s) 515, 672
HpyCH4V TGCA 3 cut(s) 274, 539, 566
HpyF10VI GCNNNNNNNGC 5 cut(s) 56, 138, 414, 439, 536
HpyF3I CTNAG 3 cut(s) 12, 114, 315
Hsp92II CATG 5 cut(s) 29, 170, 496, 502, 616
HspAI GCGC 1 cut(s) 408
Kzo9I GATC 2 cut(s) 31, 82
LmnI GCTCC 1 cut(s) 593
LpnPI CCDG 6 cut(s) 67, 218, 233, 290, 465, 576
Lsp1109I GCAGC 3 cut(s) 220, 539, 542
LweI GCATC 1 cut(s) 100
MaeI CTAG 6 cut(s) 242, 297, 380, 411, 603, 657
MaeIII GTNAC 4 cut(s) 15, 117, 199, 637
MalI GATC 2 cut(s) 33, 84
MboI GATC 2 cut(s) 31, 82
MboII GAAGA 5 cut(s) 92, 248, 365, 385, 517
MflI RGATCY 2 cut(s) 31, 82
MluCI AATT 5 cut(s) 134, 331, 346, 395, 424
MlyI GAGTC 1 cut(s) 110
MroXI GAANNNNTTC 1 cut(s) 357
MseI TTAA 1 cut(s) 575
MslI CAYNNNNRTG 1 cut(s) 497
MspA1I CMGCKG 1 cut(s) 211
MspI CCGG 1 cut(s) 452
MspR9I CCNGG 1 cut(s) 453
Mva1269I GAATGC 1 cut(s) 306
MwoI GCNNNNNNNGC 5 cut(s) 56, 138, 414, 439, 536
NciI CCSGG 1 cut(s) 453
NdeII GATC 2 cut(s) 31, 82
NheI GCTAGC 1 cut(s) 602
NlaIII CATG 5 cut(s) 29, 170, 496, 502, 616
NlaIV GGNNCC 1 cut(s) 483
NmuCI GTSAC 3 cut(s) 15, 117, 637
PagI TCATGA 1 cut(s) 492
PctI GAATGC 1 cut(s) 306
PdmI GAANNNNTTC 1 cut(s) 357
PfeI GAWTC 2 cut(s) 358, 644
PfoI TCCNGGA 1 cut(s) 451
PkrI GCNGC 3 cut(s) 210, 529, 532
PleI GAGTC 1 cut(s) 109
PpsI GAGTC 1 cut(s) 109
PsiI TTATAA 1 cut(s) 369
PspFI CCCAGC 1 cut(s) 204
PspN4I GGNNCC 1 cut(s) 483
PspPI GGNCC 1 cut(s) 170
PstI CTGCAG 2 cut(s) 541, 568
PstNI CAGNNNCTG 1 cut(s) 536
PsuI RGATCY 2 cut(s) 31, 82
RseI CAYNNNNRTG 1 cut(s) 497
SaqAI TTAA 1 cut(s) 575
SatI GCNGC 3 cut(s) 209, 528, 531
Sau3AI GATC 2 cut(s) 31, 82
Sau96I GGNCC 1 cut(s) 170
SchI GAGTC 1 cut(s) 110
ScrFI CCNGG 1 cut(s) 453
SetI ASST 8 cut(s) 22, 61, 78, 143, 228, 243, 389, 535
SfaNI GCATC 1 cut(s) 100
SfcI CTRYAG 2 cut(s) 537, 564
SinI GGWCC 1 cut(s) 170
SmiMI CAYNNNNRTG 1 cut(s) 497
SmlI CTYRAG 2 cut(s) 86, 98
SmoI CTYRAG 2 cut(s) 86, 98
Sse9I AATT 5 cut(s) 134, 331, 346, 395, 424
SsiI CCGC 3 cut(s) 211, 308, 400
SspMI CTAG 6 cut(s) 242, 297, 380, 411, 603, 657
StyD4I CCNGG 1 cut(s) 451
StyI CCWWGG 2 cut(s) 105, 336
TaqI TCGA 1 cut(s) 393
TaqII GACCGA 1 cut(s) 379
TasI AATT 5 cut(s) 134, 331, 346, 395, 424
TfiI GAWTC 2 cut(s) 358, 644
Tru1I TTAA 1 cut(s) 575
Tru9I TTAA 1 cut(s) 575
TseFI GTSAC 3 cut(s) 15, 117, 637
TseI GCWGC 3 cut(s) 208, 527, 530
Tsp45I GTSAC 3 cut(s) 15, 117, 637
TspDTI ATGAA 4 cut(s) 155, 509, 518, 534
TspGWI ACGGA 2 cut(s) 335, 656
VpaK11BI GGWCC 1 cut(s) 170
XapI RAATTY 3 cut(s) 331, 346, 395
XbaI TCTAGA 1 cut(s) 296
XmnI GAANNNNTTC 1 cut(s) 357
XspI CTAG 6 cut(s) 242, 297, 380, 411, 603, 657
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.