Rroxscaffold_7G00168140

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0001198
Physical Location & Seq
Reverse (-)
9043942 .. 9047654
3713 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00168140.1

Sequence Viewer

Length: 396 bp
ATGGAGGAGAGAGAAAGCACACATATGATAAAGAATTCGAGGAGAGAGAAAACAGATCTGGGAATTCTTTCTCCTCCATTGCTAACGATGCTGGGTATGGGTAGAGCTCCTGGTAGTGGAACCTCTCTTTTCGATCACCAAGTTCTCTCATGGCCTCACTGTAATCTCTCTTTTCGATCTTCATTTTCAAATCTTCAAATTTGTGGGTTATTCTCTAGTTTAAAGAAGGTTATTAGCGGTAGTGGCAGTGGAAAAATGCCACTGCCTGCGTCGTCGCCTGGTTCGCCACCGTCACGGTCGTCGATGTTGTGTGCACCAGGTTTCATTGAGGGTCTTCTTCAAGTGCAAGAGACTTTGCAGAAAGATTTGTGGAGAGAATCAAATAACGTGAACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

131

Amino Acids

14.25

Weight (kDa)

8.99

Isoelectric Point (pI)

72.92

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 237
AcsI RAATTY 3 cut(s) 34, 63, 198
AfiI CCNNNNNNNGG 1 cut(s) 116
AgsI TTSAA 3 cut(s) 189, 197, 341
AjnI CCWGG 3 cut(s) 109, 277, 316
AluBI AGCT 1 cut(s) 107
AluI AGCT 1 cut(s) 107
Alw21I GWGCWC 2 cut(s) 109, 316
Alw26I GTCTC 1 cut(s) 344
Alw44I GTGCAC 1 cut(s) 312
AoxI GGCC 1 cut(s) 152
ApaLI GTGCAC 1 cut(s) 312
ApoI RAATTY 3 cut(s) 34, 63, 198
Asp700I GAANNNNTTC 1 cut(s) 67
AsuHPI GGTGA 1 cut(s) 128
BaeGI GKGCMC 1 cut(s) 316
BanII GRGCYC 1 cut(s) 109
BbsI GAAGAC 1 cut(s) 326
Bbv12I GWGCWC 2 cut(s) 109, 316
BciT130I CCWGG 3 cut(s) 111, 279, 318
BcoDI GTCTC 1 cut(s) 344
BfaI CTAG 2 cut(s) 216, 394
BglII AGATCT 1 cut(s) 55
Bme1390I CCNGG 3 cut(s) 111, 279, 318
BmiI GGNNCC 1 cut(s) 121
BmrFI CCNGG 3 cut(s) 111, 279, 318
BmsI GCATC 1 cut(s) 78
BpiI GAAGAC 1 cut(s) 326
Bsc4I CCNNNNNNNGG 1 cut(s) 116
Bse3DI GCAATG 1 cut(s) 77
BseBI CCWGG 3 cut(s) 111, 279, 318
BseLI CCNNNNNNNGG 1 cut(s) 116
BseMI GCAATG 1 cut(s) 77
BseRI GAGGAG 3 cut(s) 20, 55, 63
BseSI GKGCMC 1 cut(s) 316
BseYI CCCAGC 1 cut(s) 91
Bsh1285I CGRYCG 1 cut(s) 299
BshFI GGCC 1 cut(s) 154
BsiEI CGRYCG 1 cut(s) 299
BsiHKAI GWGCWC 2 cut(s) 109, 316
BslI CCNNNNNNNGG 1 cut(s) 116
BsmAI GTCTC 1 cut(s) 344
BsnI GGCC 1 cut(s) 154
Bsp1286I GDGCHC 2 cut(s) 109, 316
Bsp143I GATC 3 cut(s) 55, 133, 176
BspACI CCGC 1 cut(s) 237
BspANI GGCC 1 cut(s) 154
BspLI GGNNCC 1 cut(s) 121
BsrDI GCAATG 1 cut(s) 77
BssMI GATC 3 cut(s) 55, 133, 176
Bst2UI CCWGG 3 cut(s) 111, 279, 318
Bst4CI ACNGT 3 cut(s) 161, 291, 297
BstC8I GCNNGC 1 cut(s) 267
BstKTI GATC 3 cut(s) 58, 136, 179
BstMAI GTCTC 1 cut(s) 344
BstMBI GATC 3 cut(s) 55, 133, 176
BstMCI CGRYCG 1 cut(s) 299
BstMWI GCNNNNNNNGC 3 cut(s) 88, 243, 283
BstNI CCWGG 3 cut(s) 111, 279, 318
BstSCI CCNGG 3 cut(s) 109, 277, 316
BstSLI GKGCMC 1 cut(s) 316
BstV2I GAAGAC 1 cut(s) 326
BstX2I RGATCY 1 cut(s) 55
BstYI RGATCY 1 cut(s) 55
BsuRI GGCC 1 cut(s) 154
BtsI GCAGTG 2 cut(s) 253, 260
BtsIMutI CAGTG 3 cut(s) 157, 253, 260
Cac8I GCNNGC 1 cut(s) 267
CseI GACGC 1 cut(s) 258
CsiI ACCWGGT 1 cut(s) 316
CviAII CATG 1 cut(s) 150
CviJI RGCY 2 cut(s) 107, 154
CviKI_1 RGCY 2 cut(s) 107, 154
DpnI GATC 3 cut(s) 57, 135, 178
DpnII GATC 3 cut(s) 55, 133, 176
DraI TTTAAA 1 cut(s) 222
Ecl136II GAGCTC 1 cut(s) 107
Eco24I GRGCYC 1 cut(s) 109
Eco53kI GAGCTC 1 cut(s) 107
EcoICRI GAGCTC 1 cut(s) 107
EcoRI GAATTC 2 cut(s) 34, 63
EcoRII CCWGG 3 cut(s) 109, 277, 316
EcoT38I GRGCYC 1 cut(s) 109
FaeI CATG 1 cut(s) 153
FaiI YATR 4 cut(s) 24, 26, 98, 151
FatI CATG 1 cut(s) 149
FauNDI CATATG 1 cut(s) 24
FriOI GRGCYC 1 cut(s) 109
FspBI CTAG 2 cut(s) 216, 394
GsaI CCCAGC 1 cut(s) 95
HaeIII GGCC 1 cut(s) 154
HgaI GACGC 1 cut(s) 258
Hin1II CATG 1 cut(s) 153
HinfI GANTC 1 cut(s) 377
HphI GGTGA 1 cut(s) 128
Hpy166II GTNNAC 2 cut(s) 314, 391
Hpy8I GTNNAC 2 cut(s) 314, 391
Hpy99I CGWCG 3 cut(s) 274, 277, 304
HpyAV CCTTC 1 cut(s) 220
HpyCH4III ACNGT 3 cut(s) 161, 291, 297
HpyCH4IV ACGT 1 cut(s) 387
HpyCH4V TGCA 3 cut(s) 314, 346, 358
HpyF10VI GCNNNNNNNGC 3 cut(s) 88, 243, 283
HpySE526I ACGT 1 cut(s) 387
Hsp92II CATG 1 cut(s) 153
Kzo9I GATC 3 cut(s) 55, 133, 176
LmnI GCTCC 1 cut(s) 112
LpnPI CCDG 9 cut(s) 44, 77, 96, 123, 264, 279, 291, 303, 330
LweI GCATC 1 cut(s) 78
MabI ACCWGGT 1 cut(s) 316
MaeI CTAG 2 cut(s) 216, 394
MaeII ACGT 1 cut(s) 387
MaeIII GTNAC 1 cut(s) 291
MalI GATC 3 cut(s) 57, 135, 178
MboI GATC 3 cut(s) 55, 133, 176
MboII GAAGA 4 cut(s) 171, 185, 326, 329
MflI RGATCY 1 cut(s) 55
MhlI GDGCHC 2 cut(s) 109, 316
MluCI AATT 3 cut(s) 34, 63, 198
MnlI CCTC 5 cut(s) 33, 84, 133, 165, 322
MroXI GAANNNNTTC 1 cut(s) 67
MseI TTAA 1 cut(s) 221
MslI CAYNNNNRTG 1 cut(s) 23
MspR9I CCNGG 3 cut(s) 111, 279, 318
MvaI CCWGG 3 cut(s) 111, 279, 318
MwoI GCNNNNNNNGC 3 cut(s) 88, 243, 283
NdeI CATATG 1 cut(s) 24
NdeII GATC 3 cut(s) 55, 133, 176
NlaIII CATG 1 cut(s) 153
NlaIV GGNNCC 1 cut(s) 121
NmuCI GTSAC 1 cut(s) 291
PdmI GAANNNNTTC 1 cut(s) 67
PfeI GAWTC 1 cut(s) 377
Psp124BI GAGCTC 1 cut(s) 109
Psp6I CCWGG 3 cut(s) 109, 277, 316
PspFI CCCAGC 1 cut(s) 91
PspGI CCWGG 3 cut(s) 109, 277, 316
PspN4I GGNNCC 1 cut(s) 121
PsuI RGATCY 1 cut(s) 55
RseI CAYNNNNRTG 1 cut(s) 23
SacI GAGCTC 1 cut(s) 109
SaqAI TTAA 1 cut(s) 221
Sau3AI GATC 3 cut(s) 55, 133, 176
ScrFI CCNGG 3 cut(s) 111, 279, 318
SduI GDGCHC 2 cut(s) 109, 316
SetI ASST 5 cut(s) 109, 125, 231, 322, 390
SexAI ACCWGGT 1 cut(s) 316
SfaNI GCATC 1 cut(s) 78
SmiMI CAYNNNNRTG 1 cut(s) 23
Sse9I AATT 3 cut(s) 34, 63, 198
SsiI CCGC 1 cut(s) 237
SspMI CTAG 2 cut(s) 216, 394
SstI GAGCTC 1 cut(s) 109
StyD4I CCNGG 3 cut(s) 109, 277, 316
TaaI ACNGT 3 cut(s) 161, 291, 297
TaiI ACGT 1 cut(s) 390
TaqI TCGA 4 cut(s) 38, 132, 175, 302
TasI AATT 3 cut(s) 34, 63, 198
TfiI GAWTC 1 cut(s) 377
Tru1I TTAA 1 cut(s) 221
Tru9I TTAA 1 cut(s) 221
TscAI CASTG 3 cut(s) 164, 253, 267
TseFI GTSAC 1 cut(s) 291
Tsp45I GTSAC 1 cut(s) 291
TspDTI ATGAA 2 cut(s) 171, 313
TspRI CASTG 3 cut(s) 164, 253, 267
VneI GTGCAC 1 cut(s) 312
XapI RAATTY 3 cut(s) 34, 63, 198
XmnI GAANNNNTTC 1 cut(s) 67
XspI CTAG 2 cut(s) 216, 394
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.