Rmu_co7998598.1_g000001

domain in TBC and LysM domain containing proteins

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co7998598.1
OG0001198
Physical Location & Seq
Forward (+)
1 .. 505
505 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co7998598.1_g000001.1.cds

Sequence Viewer

Length: 297 bp
aggaaagcagaaaagatgggcaacgctcagtcacctcctcacaaagatcctcgctttgcttctgcctccagagctttcactcatactgagcttgaagatctcaagtccctggttgagtccttggctgctcagtcacacagcgatggccaattcatctctccctcggtttttcagacttatttcgggcttcatggtcctcttggagataggatgtttgatttagtaacccagcaacggaaagaccagaagctcacttttcaagacctggtggtagccaaagtaagtactttctgttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TLD

Protein Analysis

98

Amino Acids

10.96

Weight (kDa)

8.12

Isoelectric Point (pI)

43.84

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 41
AcoI YGGCCR 1 cut(s) 145
AfaI GTAC 1 cut(s) 286
AfiI CCNNNNNNNGG 1 cut(s) 234
AgsI TTSAA 2 cut(s) 95, 260
AjnI CCWGG 2 cut(s) 108, 264
AluBI AGCT 3 cut(s) 74, 91, 250
AluI AGCT 3 cut(s) 74, 91, 250
AlwI GGATC 1 cut(s) 41
AoxI GGCC 1 cut(s) 145
ApeKI GCWGC 1 cut(s) 125
AspS9I GGNCC 1 cut(s) 194
AsuHPI GGTGA 1 cut(s) 24
AvaII GGWCC 1 cut(s) 194
BalI TGGCCA 1 cut(s) 147
BbvI GCAGC 1 cut(s) 112
BccI CCATC 2 cut(s) 10, 137
BciT130I CCWGG 2 cut(s) 110, 266
BglII AGATCT 1 cut(s) 97
BisI GCNGC 1 cut(s) 126
BlsI GCNGC 1 cut(s) 127
BmcAI AGTACT 1 cut(s) 286
Bme1390I CCNGG 2 cut(s) 110, 266
Bme18I GGWCC 1 cut(s) 194
BmgT120I GGNCC 1 cut(s) 194
BmrFI CCNGG 2 cut(s) 110, 266
BpmI CTGGAG 1 cut(s) 52
BpuEI CTTGAG 1 cut(s) 86
BsaJI CCNNGG 3 cut(s) 108, 120, 162
Bsc4I CCNNNNNNNGG 1 cut(s) 234
BseBI CCWGG 2 cut(s) 110, 266
BseDI CCNNGG 3 cut(s) 108, 120, 162
BseGI GGATG 1 cut(s) 216
BseLI CCNNNNNNNGG 1 cut(s) 234
BseMII CTCAG 3 cut(s) 41, 78, 143
BseRI GAGGAG 1 cut(s) 27
BseXI GCAGC 1 cut(s) 112
BseYI CCCAGC 1 cut(s) 228
BshFI GGCC 1 cut(s) 147
BslFI GGGAC 1 cut(s) 91
BslI CCNNNNNNNGG 1 cut(s) 234
BsmFI GGGAC 1 cut(s) 91
BsnI GGCC 1 cut(s) 147
Bsp143I GATC 2 cut(s) 46, 97
BspANI GGCC 1 cut(s) 147
BspCNI CTCAG 3 cut(s) 40, 79, 142
BspPI GGATC 1 cut(s) 41
BssECI CCNNGG 3 cut(s) 108, 120, 162
BssMI GATC 2 cut(s) 46, 97
BssT1I CCWWGG 1 cut(s) 120
Bst2UI CCWGG 2 cut(s) 110, 266
BstDEI CTNAG 3 cut(s) 27, 87, 129
BstF5I GGATG 1 cut(s) 216
BstKTI GATC 2 cut(s) 49, 100
BstMBI GATC 2 cut(s) 46, 97
BstMWI GCNNNNNNNGC 1 cut(s) 71
BstNI CCWGG 2 cut(s) 110, 266
BstSCI CCNGG 2 cut(s) 108, 264
BstV1I GCAGC 1 cut(s) 112
BstX2I RGATCY 2 cut(s) 46, 97
BstYI RGATCY 2 cut(s) 46, 97
BsuRI GGCC 1 cut(s) 147
BtgZI GCGATG 1 cut(s) 156
BtsCI GGATG 1 cut(s) 216
Cfr13I GGNCC 1 cut(s) 194
CsiI ACCWGGT 1 cut(s) 264
Csp6I GTAC 1 cut(s) 285
CviAII CATG 1 cut(s) 191
CviJI RGCY 7 cut(s) 74, 91, 125, 147, 187, 250, 275
CviKI_1 RGCY 7 cut(s) 74, 91, 125, 147, 187, 250, 275
CviQI GTAC 1 cut(s) 285
DdeI CTNAG 3 cut(s) 27, 87, 129
DpnI GATC 2 cut(s) 48, 99
DpnII GATC 2 cut(s) 46, 97
EaeI YGGCCR 1 cut(s) 145
Eco130I CCWWGG 1 cut(s) 120
Eco47I GGWCC 1 cut(s) 194
EcoRII CCWGG 2 cut(s) 108, 264
EcoT14I CCWWGG 1 cut(s) 120
ErhI CCWWGG 1 cut(s) 120
FaeI CATG 1 cut(s) 194
FaiI YATR 2 cut(s) 84, 192
FaqI GGGAC 1 cut(s) 91
FatI CATG 1 cut(s) 190
Fnu4HI GCNGC 1 cut(s) 126
FokI GGATG 1 cut(s) 223
Fsp4HI GCNGC 1 cut(s) 126
GluI GCNGC 1 cut(s) 126
GsaI CCCAGC 1 cut(s) 232
GsuI CTGGAG 1 cut(s) 52
HaeIII GGCC 1 cut(s) 147
Hin1II CATG 1 cut(s) 194
HinfI GANTC 1 cut(s) 116
HphI GGTGA 1 cut(s) 24
Hpy188I TCNGA 1 cut(s) 174
Hpy188III TCNNGA 2 cut(s) 69, 260
HpyF10VI GCNNNNNNNGC 1 cut(s) 71
HpyF3I CTNAG 3 cut(s) 27, 87, 129
Hsp92II CATG 1 cut(s) 194
Kzo9I GATC 2 cut(s) 46, 97
LpnPI CCDG 7 cut(s) 82, 95, 122, 242, 251, 257, 278
Lsp1109I GCAGC 1 cut(s) 112
MabI ACCWGGT 1 cut(s) 264
MaeIII GTNAC 3 cut(s) 30, 132, 223
MalI GATC 2 cut(s) 48, 99
MboI GATC 2 cut(s) 46, 97
MboII GAAGA 1 cut(s) 107
MflI RGATCY 2 cut(s) 46, 97
MlsI TGGCCA 1 cut(s) 147
MluCI AATT 1 cut(s) 149
MluNI TGGCCA 1 cut(s) 147
MlyI GAGTC 1 cut(s) 125
MnlI CCTC 6 cut(s) 45, 48, 60, 76, 172, 207
Mox20I TGGCCA 1 cut(s) 147
MscI TGGCCA 1 cut(s) 147
MslI CAYNNNNRTG 1 cut(s) 141
Msp20I TGGCCA 1 cut(s) 147
MspR9I CCNGG 2 cut(s) 110, 266
MvaI CCWGG 2 cut(s) 110, 266
MwoI GCNNNNNNNGC 1 cut(s) 71
NdeII GATC 2 cut(s) 46, 97
NlaIII CATG 1 cut(s) 194
NmuCI GTSAC 2 cut(s) 30, 132
PkrI GCNGC 1 cut(s) 127
PleI GAGTC 1 cut(s) 124
PpsI GAGTC 1 cut(s) 124
Psp6I CCWGG 2 cut(s) 108, 264
PspFI CCCAGC 1 cut(s) 228
PspGI CCWGG 2 cut(s) 108, 264
PspPI GGNCC 1 cut(s) 194
PsuI RGATCY 2 cut(s) 46, 97
RsaI GTAC 1 cut(s) 286
RsaNI GTAC 1 cut(s) 285
RseI CAYNNNNRTG 1 cut(s) 141
SatI GCNGC 1 cut(s) 126
Sau3AI GATC 2 cut(s) 46, 97
Sau96I GGNCC 1 cut(s) 194
ScaI AGTACT 1 cut(s) 286
SchI GAGTC 1 cut(s) 125
ScrFI CCNGG 2 cut(s) 110, 266
SetI ASST 5 cut(s) 37, 76, 93, 252, 267
SexAI ACCWGGT 1 cut(s) 264
SinI GGWCC 1 cut(s) 194
SmiMI CAYNNNNRTG 1 cut(s) 141
SmlI CTYRAG 1 cut(s) 101
SmoI CTYRAG 1 cut(s) 101
Sse9I AATT 1 cut(s) 149
StyD4I CCNGG 2 cut(s) 108, 264
StyI CCWWGG 1 cut(s) 120
TasI AATT 1 cut(s) 149
TatI WGTACW 1 cut(s) 284
TseFI GTSAC 2 cut(s) 30, 132
TseI GCWGC 1 cut(s) 125
Tsp45I GTSAC 2 cut(s) 30, 132
TspDTI ATGAA 2 cut(s) 142, 179
TspGWI ACGGA 1 cut(s) 250
VpaK11BI GGWCC 1 cut(s) 194
ZrmI AGTACT 1 cut(s) 286
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.