Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0001198

Physical Location & Seq

Genomic Coordinates Forward (+)

41038313 .. 41127475

Gene Structure 89163 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG315500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 312 bp

ATGGACCTTGATTTCCCGGAACACTTGTGTTGGAACTTGATTAGTTGCCTTTGTGAACTGACAAAAGTGATCCGCTCATATTGTGCATGGCACGAGGTGATAGTAGCAATTGTCTGGACTAATTATATGGTGTTCTGTAGTGTCATGAAACCCATTGAAAAGCTGAGATATGTTCCCAACATGAAGAAGCATATTAGCATGATTGCAGGTGGTTCTTGTATTACTTCAATTCTTCAGGTCATTGACGCTATACTTCAAAATCTTGTTGAGACAACCAAGGTAAGGAAGTCTTGTATTAAGAAAAGAGACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004128 GO:0005488 GO:0005507 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005758 GO:0005794 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0009505 GO:0009628 GO:0009651 GO:0012505 GO:0016491 GO:0016651 GO:0016653 GO:0030312 GO:0031967 GO:0031970 GO:0031974 GO:0031975 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0046872 GO:0046914 GO:0050896 GO:0055114 GO:0070013 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko00520 map00520

Pfam Domains

Protein Families

FAD_binding_6 NAD_binding_1

Protein Analysis

103

Amino Acids

11.92

Weight (kDa)

8.72

Isoelectric Point (pI)

54.33

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001198)

Species	Orthologous Gene IDs
malus_domestica	MD01G1215400.v1.1
rosa_chinensis	RchiOBHm_Chr2g0159861 RchiOBHm_Chr3g0459421 RchiOBHm_Chr3g0487861 RchiOBHm_Chr3g0492051 RchiOBHm_Chr5g0035771 RchiOBHm_Chr6g0246661 RchiOBHm_Chr7g0202831
rosa_laevigata	RLG00000001369 RLG00000011478 RLG00000020137 RLG00000020475 RLG00000032827 RLG00000034363 RLG00000035497
rosa_multiflora	Rmu_co7998598.1_g000001 Rmu_sc0001163.1_g000040 Rmu_sc0002839.1_g000004 Rmu_sc0002942.1_g000020 Rmu_sc0028697.1_g000001
rosa_roxburghii	Rroxscaffold_3G00225820 Rroxscaffold_5G00370220 Rroxscaffold_7G00168140
rosa_rugosa	Rorug01G0101200 Rorug02G0305900
rosa_samantha	Rh1AG016700 Rh1BG026700 Rh1BG034000 Rh1BG041100 Rh1DG451700 Rh2AG266600 Rh2AG315500 Rh2AG432100 Rh2AG442100 Rh2BG273300 Rh2BG470100 Rh2CG429400 Rh3BG376000 Rh3CG334900 Rh3DG337000 Rh4CG134700 Rh4CG188500 Rh5AG186100 Rh5DG184600 Rh5DG184700 Rh6AG270600 Rh7AG267600 Rh7AG285300 Rh7CG286400 Rh7CG304400 Rh7CG304500 Rh7CG509000 Rh7DG208100 Rh7DG248900 Rh7DG476600
rosa_wichuraiana	Rw1G012800 Rw6G006910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	197
Acc36I	ACCTGC	1 cut(s)	197
AccBSI	CCGCTC	1 cut(s)	75
AciI	CCGC	1 cut(s)	73
AclWI	GGATC	1 cut(s)	64
AcuI	CTGAAG	1 cut(s)	218
AdeI	CACNNNGTG	1 cut(s)	97
AfiI	CCNNNNNNNGG	1 cut(s)	282
AgsI	TTSAA	3 cut(s)	158, 228, 257
AluBI	AGCT	1 cut(s)	163
AluI	AGCT	1 cut(s)	163
Alw26I	GTCTC	2 cut(s)	263, 300
AlwI	GGATC	1 cut(s)	64
AspS9I	GGNCC	1 cut(s)	4
AsuC2I	CCSGG	1 cut(s)	17
AsuHPI	GGTGA	1 cut(s)	109
AvaII	GGWCC	1 cut(s)	4
BauI	CACGAG	1 cut(s)	92
BcnI	CCSGG	1 cut(s)	17
BcoDI	GTCTC	2 cut(s)	263, 300
BfaI	CTAG	1 cut(s)	310
BfmI	CTRYAG	1 cut(s)	136
BfuAI	ACCTGC	1 cut(s)	197
Bme1390I	CCNGG	1 cut(s)	17
Bme18I	GGWCC	1 cut(s)	4
BmgT120I	GGNCC	1 cut(s)	4
BmrFI	CCNGG	1 cut(s)	17
BpuMI	CCSGG	1 cut(s)	17
BsaJI	CCNNGG	1 cut(s)	276
Bsc4I	CCNNNNNNNGG	1 cut(s)	282
BseDI	CCNNGG	1 cut(s)	276
BseLI	CCNNNNNNNGG	1 cut(s)	282
BseMII	CTCAG	1 cut(s)	155
BsiSI	CCGG	1 cut(s)	17
BslI	CCNNNNNNNGG	1 cut(s)	282
BsmAI	GTCTC	2 cut(s)	263, 300
Bsp143I	GATC	1 cut(s)	69
BspACI	CCGC	1 cut(s)	73
BspCNI	CTCAG	1 cut(s)	156
BspHI	TCATGA	1 cut(s)	144
BspMI	ACCTGC	1 cut(s)	197
BspPI	GGATC	1 cut(s)	64
BsrBI	CCGCTC	1 cut(s)	75
BssECI	CCNNGG	1 cut(s)	276
BssMI	GATC	1 cut(s)	69
BssSI	CACGAG	1 cut(s)	92
BssT1I	CCWWGG	1 cut(s)	276
Bst2BI	CACGAG	1 cut(s)	92
BstDEI	CTNAG	1 cut(s)	164
BstKTI	GATC	1 cut(s)	72
BstMAI	GTCTC	2 cut(s)	263, 300
BstMBI	GATC	1 cut(s)	69
BstSCI	CCNGG	1 cut(s)	15
BstSFI	CTRYAG	1 cut(s)	136
BveI	ACCTGC	1 cut(s)	197
CciI	TCATGA	1 cut(s)	144
Cfr13I	GGNCC	1 cut(s)	4
CseI	GACGC	1 cut(s)	254
CviAII	CATG	4 cut(s)	87, 145, 181, 199
CviJI	RGCY	1 cut(s)	163
CviKI_1	RGCY	1 cut(s)	163
DdeI	CTNAG	1 cut(s)	164
DpnI	GATC	1 cut(s)	71
DpnII	GATC	1 cut(s)	69
DraIII	CACNNNGTG	1 cut(s)	97
Eco130I	CCWWGG	1 cut(s)	276
Eco47I	GGWCC	1 cut(s)	4
Eco57I	CTGAAG	1 cut(s)	218
EcoT14I	CCWWGG	1 cut(s)	276
ErhI	CCWWGG	1 cut(s)	276
FaeI	CATG	4 cut(s)	90, 148, 184, 202
FalI	AAGNNNNNCTT	2 cut(s)	274, 306
FatI	CATG	4 cut(s)	86, 144, 180, 198
FspBI	CTAG	1 cut(s)	310
HapII	CCGG	1 cut(s)	17
HgaI	GACGC	1 cut(s)	254
Hin1II	CATG	4 cut(s)	90, 148, 184, 202
HpaII	CCGG	1 cut(s)	17
HphI	GGTGA	1 cut(s)	109
Hpy166II	GTNNAC	1 cut(s)	56
Hpy188III	TCNNGA	2 cut(s)	115, 145
Hpy8I	GTNNAC	1 cut(s)	56
HpyCH4V	TGCA	2 cut(s)	86, 206
HpyF3I	CTNAG	1 cut(s)	164
Hsp92II	CATG	4 cut(s)	90, 148, 184, 202
Kzo9I	GATC	1 cut(s)	69
LpnPI	CCDG	4 cut(s)	30, 100, 192, 221
MaeI	CTAG	1 cut(s)	310
MalI	GATC	1 cut(s)	71
MbiI	CCGCTC	1 cut(s)	75
MboI	GATC	1 cut(s)	69
MboII	GAAGA	2 cut(s)	196, 224
MfeI	CAATTG	1 cut(s)	108
MluCI	AATT	3 cut(s)	108, 121, 228
MmeI	TCCRAC	1 cut(s)	11
MnlI	CCTC	1 cut(s)	88
MseI	TTAA	1 cut(s)	297
MspI	CCGG	1 cut(s)	17
MspR9I	CCNGG	1 cut(s)	17
MunI	CAATTG	1 cut(s)	108
NciI	CCSGG	1 cut(s)	17
NdeII	GATC	1 cut(s)	69
NlaIII	CATG	4 cut(s)	90, 148, 184, 202
PagI	TCATGA	1 cut(s)	144
PaqCI	CACCTGC	1 cut(s)	197
PfoI	TCCNGGA	1 cut(s)	15
PspPI	GGNCC	1 cut(s)	4
SaqAI	TTAA	1 cut(s)	297
Sau3AI	GATC	1 cut(s)	69
Sau96I	GGNCC	1 cut(s)	4
ScrFI	CCNGG	1 cut(s)	17
SetI	ASST	6 cut(s)	9, 99, 165, 211, 240, 282
SfcI	CTRYAG	1 cut(s)	136
SinI	GGWCC	1 cut(s)	4
Sse9I	AATT	3 cut(s)	108, 121, 228
SsiI	CCGC	1 cut(s)	73
SspMI	CTAG	1 cut(s)	310
StyD4I	CCNGG	1 cut(s)	15
StyI	CCWWGG	1 cut(s)	276
TasI	AATT	3 cut(s)	108, 121, 228
Tru1I	TTAA	1 cut(s)	297
Tru9I	TTAA	1 cut(s)	297
TspDTI	ATGAA	2 cut(s)	161, 197
VpaK11BI	GGWCC	1 cut(s)	4
XspI	CTAG	1 cut(s)	310

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.