Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7A

Orthogroup ID

OG0001198

Physical Location & Seq

Genomic Coordinates Forward (+)

27810702 .. 27818375

Gene Structure 7674 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7AG267600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 189 bp

ATGCTGGCAGAGGCGCAGACGGAAGTTGAGAATTCCTTGGGTGGAAATTCAGAAGAGATTCTTTTTGATGAAAAGAGGAAATCTATTATGGGCACCATTGACCAAAATGCTAAGCGCCATCCGCTCCGCCAAGCGTCAACTCACCATGGCCCCTGCCTCAATCAGCTTCTTGACGGAGGAGGTTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000347 GO:0000785 GO:0003674 GO:0003682 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005737 GO:0005829 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006268 GO:0006275 GO:0006725 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009889 GO:0009987 GO:0010556 GO:0016043 GO:0019219 GO:0019222 GO:0030174 GO:0031323 GO:0031326 GO:0032392 GO:0032508 GO:0032991 GO:0034641 GO:0034645 GO:0042555 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0050789 GO:0050794 GO:0051052 GO:0051171 GO:0051276 GO:0060255 GO:0065007 GO:0071103 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0090329 GO:1901360 GO:1901576 GO:2000112

KEGG Pathways

Metabolic & Signaling

ko03030 ko04110 ko04111 ko04113 map03030 map04110 map04111 map04113

Pfam Domains

Protein Families

MCM MCM_N MCM_OB

Protein Analysis

62

Amino Acids

6.73

Weight (kDa)

5.44

Isoelectric Point (pI)

51.12

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001198)

Species	Orthologous Gene IDs
malus_domestica	MD01G1215400.v1.1
rosa_chinensis	RchiOBHm_Chr2g0159861 RchiOBHm_Chr3g0459421 RchiOBHm_Chr3g0487861 RchiOBHm_Chr3g0492051 RchiOBHm_Chr5g0035771 RchiOBHm_Chr6g0246661 RchiOBHm_Chr7g0202831
rosa_laevigata	RLG00000001369 RLG00000011478 RLG00000020137 RLG00000020475 RLG00000032827 RLG00000034363 RLG00000035497
rosa_multiflora	Rmu_co7998598.1_g000001 Rmu_sc0001163.1_g000040 Rmu_sc0002839.1_g000004 Rmu_sc0002942.1_g000020 Rmu_sc0028697.1_g000001
rosa_roxburghii	Rroxscaffold_3G00225820 Rroxscaffold_5G00370220 Rroxscaffold_7G00168140
rosa_rugosa	Rorug01G0101200 Rorug02G0305900
rosa_samantha	Rh1AG016700 Rh1BG026700 Rh1BG034000 Rh1BG041100 Rh1DG451700 Rh2AG266600 Rh2AG315500 Rh2AG432100 Rh2AG442100 Rh2BG273300 Rh2BG470100 Rh2CG429400 Rh3BG376000 Rh3CG334900 Rh3DG337000 Rh4CG134700 Rh4CG188500 Rh5AG186100 Rh5DG184600 Rh5DG184700 Rh6AG270600 Rh7AG267600 Rh7AG285300 Rh7CG286400 Rh7CG304400 Rh7CG304500 Rh7CG509000 Rh7DG208100 Rh7DG248900 Rh7DG476600
rosa_wichuraiana	Rw1G012800 Rw6G006910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	92
AccBSI	CCGCTC	1 cut(s)	124
AciI	CCGC	2 cut(s)	122, 127
AcsI	RAATTY	2 cut(s)	31, 46
AluBI	AGCT	1 cut(s)	166
AluI	AGCT	1 cut(s)	166
AoxI	GGCC	1 cut(s)	148
ApoI	RAATTY	2 cut(s)	31, 46
Asp700I	GAANNNNTTC	1 cut(s)	57
AspLEI	GCGC	2 cut(s)	16, 117
AspS9I	GGNCC	1 cut(s)	149
AsuHPI	GGTGA	1 cut(s)	134
BaeGI	GKGCMC	1 cut(s)	95
BanI	GGYRCC	1 cut(s)	92
BccI	CCATC	1 cut(s)	126
BfoI	RGCGCY	1 cut(s)	118
BlpI	GCTNAGC	1 cut(s)	111
BmgT120I	GGNCC	1 cut(s)	149
BmiI	GGNNCC	2 cut(s)	94, 151
Bpu1102I	GCTNAGC	1 cut(s)	111
BsaJI	CCNNGG	2 cut(s)	36, 145
BseDI	CCNNGG	2 cut(s)	36, 145
BseGI	GGATG	1 cut(s)	118
BseSI	GKGCMC	1 cut(s)	95
BshFI	GGCC	1 cut(s)	150
BshNI	GGYRCC	1 cut(s)	92
BsnI	GGCC	1 cut(s)	150
Bsp1286I	GDGCHC	1 cut(s)	95
Bsp1720I	GCTNAGC	1 cut(s)	111
Bsp19I	CCATGG	1 cut(s)	145
BspACI	CCGC	2 cut(s)	122, 127
BspANI	GGCC	1 cut(s)	150
BspLI	GGNNCC	2 cut(s)	94, 151
BspT107I	GGYRCC	1 cut(s)	92
BsrBI	CCGCTC	1 cut(s)	124
BssECI	CCNNGG	2 cut(s)	36, 145
BssT1I	CCWWGG	2 cut(s)	36, 145
Bst6I	CTCTTC	1 cut(s)	48
BstC8I	GCNNGC	1 cut(s)	6
BstDEI	CTNAG	1 cut(s)	111
BstDSI	CCRYGG	1 cut(s)	145
BstF5I	GGATG	1 cut(s)	118
BstH2I	RGCGCY	1 cut(s)	118
BstHHI	GCGC	2 cut(s)	16, 117
BstMWI	GCNNNNNNNGC	1 cut(s)	121
BstSLI	GKGCMC	1 cut(s)	95
BsuRI	GGCC	1 cut(s)	150
BtgI	CCRYGG	1 cut(s)	145
BtsCI	GGATG	1 cut(s)	118
Cac8I	GCNNGC	1 cut(s)	6
CfoI	GCGC	2 cut(s)	16, 117
Cfr13I	GGNCC	1 cut(s)	149
CseI	GACGC	1 cut(s)	123
CviAII	CATG	1 cut(s)	146
CviJI	RGCY	2 cut(s)	150, 166
CviKI_1	RGCY	2 cut(s)	150, 166
DdeI	CTNAG	1 cut(s)	111
Eam1104I	CTCTTC	1 cut(s)	48
EarI	CTCTTC	1 cut(s)	48
EciI	GGCGGA	1 cut(s)	116
Eco130I	CCWWGG	2 cut(s)	36, 145
EcoRI	GAATTC	1 cut(s)	31
EcoT14I	CCWWGG	2 cut(s)	36, 145
ErhI	CCWWGG	2 cut(s)	36, 145
FaeI	CATG	1 cut(s)	149
FaiI	YATR	2 cut(s)	89, 147
FalI	AAGNNNNNCTT	2 cut(s)	45, 77
FatI	CATG	1 cut(s)	145
FokI	GGATG	1 cut(s)	105
GlaI	GCGC	2 cut(s)	15, 116
HaeII	RGCGCY	1 cut(s)	118
HaeIII	GGCC	1 cut(s)	150
HgaI	GACGC	1 cut(s)	123
HhaI	GCGC	2 cut(s)	16, 117
Hin1II	CATG	1 cut(s)	149
Hin6I	GCGC	2 cut(s)	14, 115
HinP1I	GCGC	2 cut(s)	14, 115
HincII	GTYRAC	1 cut(s)	138
HindII	GTYRAC	1 cut(s)	138
HinfI	GANTC	1 cut(s)	58
HphI	GGTGA	1 cut(s)	134
Hpy166II	GTNNAC	1 cut(s)	138
Hpy188I	TCNGA	1 cut(s)	52
Hpy188III	TCNNGA	2 cut(s)	170, 186
Hpy8I	GTNNAC	1 cut(s)	138
HpyF10VI	GCNNNNNNNGC	1 cut(s)	121
HpyF3I	CTNAG	1 cut(s)	111
Hsp92II	CATG	1 cut(s)	149
HspAI	GCGC	2 cut(s)	14, 115
LmnI	GCTCC	1 cut(s)	129
LpnPI	CCDG	1 cut(s)	166
MbiI	CCGCTC	1 cut(s)	124
MboII	GAAGA	1 cut(s)	65
MhlI	GDGCHC	1 cut(s)	95
MluCI	AATT	2 cut(s)	31, 46
MnlI	CCTC	5 cut(s)	4, 69, 167, 170, 173
MroXI	GAANNNNTTC	1 cut(s)	57
MwoI	GCNNNNNNNGC	1 cut(s)	121
NcoI	CCATGG	1 cut(s)	145
NlaIII	CATG	1 cut(s)	149
NlaIV	GGNNCC	2 cut(s)	94, 151
PdmI	GAANNNNTTC	1 cut(s)	57
PfeI	GAWTC	1 cut(s)	58
PspN4I	GGNNCC	2 cut(s)	94, 151
PspPI	GGNCC	1 cut(s)	149
Sau96I	GGNCC	1 cut(s)	149
SduI	GDGCHC	1 cut(s)	95
SetI	ASST	2 cut(s)	168, 184
SgeI	CNNG	6 cut(s)	17, 49, 143, 158, 165, 182
Sse9I	AATT	2 cut(s)	31, 46
SsiI	CCGC	2 cut(s)	122, 127
StyI	CCWWGG	2 cut(s)	36, 145
TasI	AATT	2 cut(s)	31, 46
TfiI	GAWTC	1 cut(s)	58
TspDTI	ATGAA	1 cut(s)	84
TspGWI	ACGGA	2 cut(s)	35, 189
XapI	RAATTY	2 cut(s)	31, 46
XmnI	GAANNNNTTC	1 cut(s)	57

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.