Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0001198

Physical Location & Seq

Genomic Coordinates Reverse (-)

65439186 .. 65442893

Gene Structure 3708 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000020475

Sequence Viewer

CDS Protein Promoter (2k)

Length: 414 bp

ATGAAGAAGCATATTGGCATGATTGCGGGTGGTTCTGGTATTACTCAAATGCTTCAGGTCATTGACGCTACACTAAAAAATCTTGATGACACAACCAAGGTTACTAGGATATATCGGGCTTTGAGCACTTACATTGATTGTCTGCATATAAAAAAGTCTGACAAGTCTAGAATGCTGGCAGAGGCGCAGACGGAAGTTGAGAATTCCTTGGGTGGAAATTCAGAAGAGATTCTTTTTTATGAAAATAGGTGTGCGGCTGCAGCTCCTCGAGCCTCCGATGGCTCCGCCGCTCCTGCAAAGATATTGTACGTGCTCTTGGATGTTCGAGTTCTTTGTTTACTAGTGGTTAGTTTGAGCGTAACTCTGGTAGCTTATATTTTGGCAGAACTTGCTACCGTAGTCGTTTCTGCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000347 GO:0000785 GO:0003674 GO:0003682 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005737 GO:0005829 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006268 GO:0006275 GO:0006725 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009889 GO:0009987 GO:0010556 GO:0016043 GO:0019219 GO:0019222 GO:0030174 GO:0031323 GO:0031326 GO:0032392 GO:0032508 GO:0032991 GO:0034641 GO:0034645 GO:0042555 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0050789 GO:0050794 GO:0051052 GO:0051171 GO:0051276 GO:0060255 GO:0065007 GO:0071103 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0090329 GO:1901360 GO:1901576 GO:2000112

KEGG Pathways

Metabolic & Signaling

ko03030 ko04110 ko04111 ko04113 map03030 map04110 map04111 map04113

Pfam Domains

Protein Families

MCM MCM_N MCM_OB

Protein Analysis

138

Amino Acids

14.73

Weight (kDa)

6.72

Isoelectric Point (pI)

32.04

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001198)

Species	Orthologous Gene IDs
malus_domestica	MD01G1215400.v1.1
rosa_chinensis	RchiOBHm_Chr2g0159861 RchiOBHm_Chr3g0459421 RchiOBHm_Chr3g0487861 RchiOBHm_Chr3g0492051 RchiOBHm_Chr5g0035771 RchiOBHm_Chr6g0246661 RchiOBHm_Chr7g0202831
rosa_laevigata	RLG00000001369 RLG00000011478 RLG00000020137 RLG00000020475 RLG00000032827 RLG00000034363 RLG00000035497
rosa_multiflora	Rmu_co7998598.1_g000001 Rmu_sc0001163.1_g000040 Rmu_sc0002839.1_g000004 Rmu_sc0002942.1_g000020 Rmu_sc0028697.1_g000001
rosa_roxburghii	Rroxscaffold_3G00225820 Rroxscaffold_5G00370220 Rroxscaffold_7G00168140
rosa_rugosa	Rorug01G0101200 Rorug02G0305900
rosa_samantha	Rh1AG016700 Rh1BG026700 Rh1BG034000 Rh1BG041100 Rh1DG451700 Rh2AG266600 Rh2AG315500 Rh2AG432100 Rh2AG442100 Rh2BG273300 Rh2BG470100 Rh2CG429400 Rh3BG376000 Rh3CG334900 Rh3DG337000 Rh4CG134700 Rh4CG188500 Rh5AG186100 Rh5DG184600 Rh5DG184700 Rh6AG270600 Rh7AG267600 Rh7AG285300 Rh7CG286400 Rh7CG304400 Rh7CG304500 Rh7CG509000 Rh7DG208100 Rh7DG248900 Rh7DG476600
rosa_wichuraiana	Rw1G012800 Rw6G006910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	290
AciI	CCGC	4 cut(s)	26, 254, 285, 288
AcsI	RAATTY	2 cut(s)	202, 217
AcuI	CTGAAG	1 cut(s)	38
AfaI	GTAC	1 cut(s)	308
AhlI	ACTAGT	1 cut(s)	340
AluBI	AGCT	2 cut(s)	263, 371
AluI	AGCT	2 cut(s)	263, 371
Alw21I	GWGCWC	2 cut(s)	128, 315
Ama87I	CYCGRG	1 cut(s)	267
ApeKI	GCWGC	2 cut(s)	257, 260
ApoI	RAATTY	2 cut(s)	202, 217
Asp700I	GAANNNNTTC	1 cut(s)	228
AspLEI	GCGC	1 cut(s)	187
AvaI	CYCGRG	1 cut(s)	267
Bbv12I	GWGCWC	2 cut(s)	128, 315
BbvI	GCAGC	2 cut(s)	244, 272
BccI	CCATC	1 cut(s)	272
BcuI	ACTAGT	1 cut(s)	340
BfaI	CTAG	3 cut(s)	105, 168, 341
BfmI	CTRYAG	1 cut(s)	258
BisI	GCNGC	4 cut(s)	255, 258, 261, 288
BlsI	GCNGC	4 cut(s)	256, 259, 262, 289
BmeT110I	CYCGRG	1 cut(s)	267
BmiI	GGNNCC	1 cut(s)	283
BplI	GAGNNNNNCTC	2 cut(s)	346, 378
BsaAI	YACGTR	1 cut(s)	310
BsaJI	CCNNGG	2 cut(s)	96, 207
BseDI	CCNNGG	2 cut(s)	96, 207
BseGI	GGATG	1 cut(s)	325
BseRI	GAGGAG	1 cut(s)	255
BseXI	GCAGC	2 cut(s)	244, 272
BsiHKAI	GWGCWC	2 cut(s)	128, 315
BsiHKCI	CYCGRG	1 cut(s)	267
BsmI	GAATGC	1 cut(s)	177
BsoBI	CYCGRG	1 cut(s)	267
Bsp1286I	GDGCHC	2 cut(s)	128, 315
BspACI	CCGC	4 cut(s)	26, 254, 285, 288
BspLI	GGNNCC	1 cut(s)	283
BspMAI	CTGCAG	1 cut(s)	262
BsrBI	CCGCTC	1 cut(s)	290
BssECI	CCNNGG	2 cut(s)	96, 207
BssT1I	CCWWGG	2 cut(s)	96, 207
Bst4CI	ACNGT	1 cut(s)	397
Bst6I	CTCTTC	1 cut(s)	219
BstAPI	GCANNNNNTGC	1 cut(s)	389
BstBAI	YACGTR	1 cut(s)	310
BstC8I	GCNNGC	1 cut(s)	177
BstF5I	GGATG	1 cut(s)	325
BstHHI	GCGC	1 cut(s)	187
BstMWI	GCNNNNNNNGC	4 cut(s)	260, 269, 293, 389
BstSFI	CTRYAG	1 cut(s)	258
BstV1I	GCAGC	2 cut(s)	244, 272
BtsCI	GGATG	1 cut(s)	325
Cac8I	GCNNGC	1 cut(s)	177
CfoI	GCGC	1 cut(s)	187
CseI	GACGC	1 cut(s)	74
Csp6I	GTAC	1 cut(s)	307
CviAII	CATG	1 cut(s)	19
CviJI	RGCY	6 cut(s)	119, 257, 263, 272, 282, 371
CviKI_1	RGCY	6 cut(s)	119, 257, 263, 272, 282, 371
CviQI	GTAC	1 cut(s)	307
Eam1104I	CTCTTC	1 cut(s)	219
EarI	CTCTTC	1 cut(s)	219
EciI	GGCGGA	1 cut(s)	274
Eco130I	CCWWGG	2 cut(s)	96, 207
Eco57I	CTGAAG	1 cut(s)	38
Eco88I	CYCGRG	1 cut(s)	267
EcoRI	GAATTC	1 cut(s)	202
EcoT14I	CCWWGG	2 cut(s)	96, 207
ErhI	CCWWGG	2 cut(s)	96, 207
FaeI	CATG	1 cut(s)	22
FaiI	YATR	8 cut(s)	12, 20, 112, 147, 149, 240, 375, 412
FalI	AAGNNNNNCTT	2 cut(s)	216, 248
FatI	CATG	1 cut(s)	18
FauI	CCCGC	1 cut(s)	19
Fnu4HI	GCNGC	4 cut(s)	255, 258, 261, 288
FokI	GGATG	1 cut(s)	332
Fsp4HI	GCNGC	4 cut(s)	255, 258, 261, 288
FspBI	CTAG	3 cut(s)	105, 168, 341
GlaI	GCGC	1 cut(s)	186
GluI	GCNGC	4 cut(s)	255, 258, 261, 288
HgaI	GACGC	1 cut(s)	74
HhaI	GCGC	1 cut(s)	187
Hin1II	CATG	1 cut(s)	22
Hin6I	GCGC	1 cut(s)	185
HinP1I	GCGC	1 cut(s)	185
HinfI	GANTC	1 cut(s)	229
Hpy166II	GTNNAC	1 cut(s)	338
Hpy188I	TCNGA	3 cut(s)	160, 223, 277
Hpy188III	TCNNGA	2 cut(s)	83, 168
Hpy8I	GTNNAC	1 cut(s)	338
HpyCH4III	ACNGT	1 cut(s)	397
HpyCH4IV	ACGT	1 cut(s)	309
HpyCH4V	TGCA	4 cut(s)	145, 260, 296, 410
HpyF10VI	GCNNNNNNNGC	4 cut(s)	260, 269, 293, 389
HpySE526I	ACGT	1 cut(s)	309
Hsp92II	CATG	1 cut(s)	22
HspAI	GCGC	1 cut(s)	185
LmnI	GCTCC	3 cut(s)	268, 287, 295
LpnPI	CCDG	5 cut(s)	21, 41, 161, 306, 350
Lsp1109I	GCAGC	2 cut(s)	244, 272
MaeI	CTAG	3 cut(s)	105, 168, 341
MaeII	ACGT	1 cut(s)	309
MaeIII	GTNAC	2 cut(s)	100, 358
MbiI	CCGCTC	1 cut(s)	290
MboII	GAAGA	2 cut(s)	16, 236
MhlI	GDGCHC	2 cut(s)	128, 315
MluCI	AATT	2 cut(s)	202, 217
MnlI	CCTC	3 cut(s)	175, 276, 283
MroXI	GAANNNNTTC	1 cut(s)	228
Mva1269I	GAATGC	1 cut(s)	177
MwoI	GCNNNNNNNGC	4 cut(s)	260, 269, 293, 389
NlaIII	CATG	1 cut(s)	22
NlaIV	GGNNCC	1 cut(s)	283
PaeR7I	CTCGAG	1 cut(s)	267
PctI	GAATGC	1 cut(s)	177
PdmI	GAANNNNTTC	1 cut(s)	228
PfeI	GAWTC	1 cut(s)	229
PkrI	GCNGC	4 cut(s)	256, 259, 262, 289
Ppu21I	YACGTR	1 cut(s)	310
PspN4I	GGNNCC	1 cut(s)	283
PspXI	VCTCGAGB	1 cut(s)	267
PstI	CTGCAG	1 cut(s)	262
RsaI	GTAC	1 cut(s)	308
RsaNI	GTAC	1 cut(s)	307
SatI	GCNGC	4 cut(s)	255, 258, 261, 288
SduI	GDGCHC	2 cut(s)	128, 315
SetI	ASST	6 cut(s)	60, 102, 251, 265, 312, 373
SfcI	CTRYAG	1 cut(s)	258
Sfr274I	CTCGAG	1 cut(s)	267
SlaI	CTCGAG	1 cut(s)	267
SmlI	CTYRAG	1 cut(s)	267
SmoI	CTYRAG	1 cut(s)	267
SpeI	ACTAGT	1 cut(s)	340
Sse9I	AATT	2 cut(s)	202, 217
SsiI	CCGC	4 cut(s)	26, 254, 285, 288
SspMI	CTAG	3 cut(s)	105, 168, 341
StyI	CCWWGG	2 cut(s)	96, 207
TaaI	ACNGT	1 cut(s)	397
TaiI	ACGT	1 cut(s)	312
TaqI	TCGA	2 cut(s)	268, 325
TasI	AATT	2 cut(s)	202, 217
TauI	GCSGC	2 cut(s)	257, 290
TfiI	GAWTC	1 cut(s)	229
TseI	GCWGC	2 cut(s)	257, 260
TspDTI	ATGAA	2 cut(s)	17, 255
TspGWI	ACGGA	1 cut(s)	206
XapI	RAATTY	2 cut(s)	202, 217
XbaI	TCTAGA	1 cut(s)	167
XhoI	CTCGAG	1 cut(s)	267
XmnI	GAANNNNTTC	1 cut(s)	228
XspI	CTAG	3 cut(s)	105, 168, 341

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.