RLG00000035497

domain in TBC and LysM domain containing proteins

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0001198
Physical Location & Seq
Forward (+)
67695222 .. 67697426
2205 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000035497

Sequence Viewer

Length: 795 bp
ATGGGAAACGCTCAGTCACCTCCTCACGGAGATCCTCACTTTGCTTCCGCCTCCAGAGCTTTCACTCATACTGAGCTTGAAGATCTCAAGTCCCTACTTGAGTCCTTGGCTGCTCAGTTACACAGTGACGGCCAATTTATCTCTCCCTCGGTTTTTCAGACTTATTTGGGGCTTCATGGTCCTCTTGGGGATAGGATGTTTGATTTAGTAACCCAGCAACGAAAAGACCAGAAGCTCACATTTGAAGACCTGGTGGTAGCCAAAACTTACATTGATTGTCTGCATATAATAAAGTCTGATAAGTCTAGAATGCTGGCGGAGGCGCAGACGGAAGTTGAGAATTCCTTGGGTGGAAATTCAGAAGAGATTCTTTTTGATGAAAAGAGAGTACATACTTTTCTTGTACCAAGGATAGATGAGGTTGTTGGTGTTTATCTGTACTTATCTATTTTGTATCTTAATGGCAGAAATCCTTTGTATCTGCTGGTCATCTTCGTTGGCTTTTTACTCTTTAAAGCACTATGGATGCAGCTAGACACCTCGGCCGAATTCCGCAATGGTGCTCTTCCAGGACTTCTCTCTTTGTCCACCAAGTTGGTGCCAACTATCATGAACATGATGAAGAGATTAGCAGATGAAGGGGCAGCAGCTATTGTGGATAACAATCCTCAAAGAAACCATGCAGTAGCATTAAAGAGCATAAGCAATGGAGCAAATGCTAGCAGTTCCATGTCATCTACTGCCTCATCGGAAGTGACGGAATCTAAATACTCTAGTCCTTCAAAACAAGAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TLD

Protein Analysis

265

Amino Acids

29.09

Weight (kDa)

5.62

Isoelectric Point (pI)

38.57

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 598
AciI CCGC 3 cut(s) 48, 317, 553
AclWI GGATC 1 cut(s) 26
AcoI YGGCCR 2 cut(s) 130, 543
AcsI RAATTY 3 cut(s) 340, 355, 548
AfaI GTAC 3 cut(s) 390, 405, 440
AfiI CCNNNNNNNGG 1 cut(s) 26
AgsI TTSAA 3 cut(s) 80, 245, 783
AjnI CCWGG 2 cut(s) 249, 568
AluBI AGCT 5 cut(s) 59, 76, 235, 532, 650
AluI AGCT 5 cut(s) 59, 76, 235, 532, 650
Alw21I GWGCWC 1 cut(s) 565
AlwI GGATC 1 cut(s) 26
AoxI GGCC 2 cut(s) 130, 543
ApeKI GCWGC 4 cut(s) 110, 529, 644, 647
ApoI RAATTY 3 cut(s) 340, 355, 548
Asp700I GAANNNNTTC 1 cut(s) 366
AspLEI GCGC 1 cut(s) 325
AspS9I GGNCC 1 cut(s) 179
AsuHPI GGTGA 1 cut(s) 9
AsuNHI GCTAGC 1 cut(s) 719
AvaII GGWCC 1 cut(s) 179
BanI GGYRCC 1 cut(s) 598
BbsI GAAGAC 1 cut(s) 252
Bbv12I GWGCWC 1 cut(s) 565
BbvI GCAGC 4 cut(s) 97, 541, 656, 659
BceAI ACGGC 1 cut(s) 145
BciT130I CCWGG 2 cut(s) 251, 570
BfaI CTAG 4 cut(s) 306, 533, 720, 774
BglII AGATCT 1 cut(s) 82
BisI GCNGC 4 cut(s) 111, 530, 645, 648
BlsI GCNGC 4 cut(s) 112, 531, 646, 649
Bme1390I CCNGG 2 cut(s) 251, 570
Bme18I GGWCC 1 cut(s) 179
BmgT120I GGNCC 1 cut(s) 179
BmiI GGNNCC 1 cut(s) 600
BmrFI CCNGG 2 cut(s) 251, 570
BmsI GCATC 1 cut(s) 516
BmtI GCTAGC 1 cut(s) 723
BpiI GAAGAC 1 cut(s) 252
BpmI CTGGAG 1 cut(s) 37
BpuEI CTTGAG 2 cut(s) 71, 119
BsaBI GATNNNNATC 1 cut(s) 663
BsaJI CCNNGG 5 cut(s) 105, 147, 345, 407, 540
Bsc4I CCNNNNNNNGG 1 cut(s) 26
Bse3DI GCAATG 2 cut(s) 562, 712
Bse8I GATNNNNATC 1 cut(s) 663
BseBI CCWGG 2 cut(s) 251, 570
BseDI CCNNGG 5 cut(s) 105, 147, 345, 407, 540
BseGI GGATG 2 cut(s) 201, 531
BseJI GATNNNNATC 1 cut(s) 663
BseLI CCNNNNNNNGG 1 cut(s) 26
BseMI GCAATG 2 cut(s) 562, 712
BseMII CTCAG 3 cut(s) 26, 63, 128
BseRI GAGGAG 1 cut(s) 12
BseX3I CGGCCG 1 cut(s) 543
BseXI GCAGC 4 cut(s) 97, 541, 656, 659
BseYI CCCAGC 1 cut(s) 213
Bsh1285I CGRYCG 1 cut(s) 546
BshFI GGCC 2 cut(s) 132, 545
BshNI GGYRCC 1 cut(s) 598
BsiEI CGRYCG 1 cut(s) 546
BsiHKAI GWGCWC 1 cut(s) 565
BslFI GGGAC 1 cut(s) 76
BslI CCNNNNNNNGG 1 cut(s) 26
BsmFI GGGAC 1 cut(s) 76
BsmI GAATGC 1 cut(s) 315
BsnI GGCC 2 cut(s) 132, 545
Bsp1286I GDGCHC 1 cut(s) 565
Bsp143I GATC 2 cut(s) 31, 82
BspACI CCGC 3 cut(s) 48, 317, 553
BspANI GGCC 2 cut(s) 132, 545
BspCNI CTCAG 3 cut(s) 25, 64, 127
BspHI TCATGA 1 cut(s) 609
BspLI GGNNCC 1 cut(s) 600
BspOI GCTAGC 1 cut(s) 723
BspPI GGATC 1 cut(s) 26
BspQI GCTCTTC 1 cut(s) 570
BspT107I GGYRCC 1 cut(s) 598
BsrDI GCAATG 2 cut(s) 562, 712
BssECI CCNNGG 5 cut(s) 105, 147, 345, 407, 540
BssMI GATC 2 cut(s) 31, 82
BssT1I CCWWGG 3 cut(s) 105, 345, 407
Bst2UI CCWGG 2 cut(s) 251, 570
Bst4CI ACNGT 1 cut(s) 125
Bst6I CTCTTC 3 cut(s) 357, 570, 617
BstC8I GCNNGC 2 cut(s) 315, 721
BstDEI CTNAG 3 cut(s) 12, 72, 114
BstF5I GGATG 2 cut(s) 201, 531
BstHHI GCGC 1 cut(s) 325
BstKTI GATC 2 cut(s) 34, 85
BstMBI GATC 2 cut(s) 31, 82
BstMCI CGRYCG 1 cut(s) 546
BstMWI GCNNNNNNNGC 1 cut(s) 56
BstNI CCWGG 2 cut(s) 251, 570
BstSCI CCNGG 2 cut(s) 249, 568
BstV1I GCAGC 4 cut(s) 97, 541, 656, 659
BstV2I GAAGAC 1 cut(s) 252
BstX2I RGATCY 2 cut(s) 31, 82
BstXI CCANNNNNNTGG 1 cut(s) 595
BstYI RGATCY 2 cut(s) 31, 82
BstZI CGGCCG 1 cut(s) 543
BsuRI GGCC 2 cut(s) 132, 545
BtsCI GGATG 2 cut(s) 201, 531
BtsIMutI CAGTG 1 cut(s) 130
Cac8I GCNNGC 2 cut(s) 315, 721
CciI TCATGA 1 cut(s) 609
CfoI GCGC 1 cut(s) 325
Cfr13I GGNCC 1 cut(s) 179
CsiI ACCWGGT 1 cut(s) 249
Csp6I GTAC 3 cut(s) 389, 404, 439
CviAII CATG 5 cut(s) 176, 610, 616, 680, 730
CviQI GTAC 3 cut(s) 389, 404, 439
DdeI CTNAG 3 cut(s) 12, 72, 114
DpnI GATC 2 cut(s) 33, 84
DpnII GATC 2 cut(s) 31, 82
DraI TTTAAA 1 cut(s) 514
EaeI YGGCCR 2 cut(s) 130, 543
EagI CGGCCG 1 cut(s) 543
Eam1104I CTCTTC 3 cut(s) 357, 570, 617
EarI CTCTTC 3 cut(s) 357, 570, 617
EciI GGCGGA 2 cut(s) 37, 332
EclXI CGGCCG 1 cut(s) 543
Eco130I CCWWGG 3 cut(s) 105, 345, 407
Eco47I GGWCC 1 cut(s) 179
Eco52I CGGCCG 1 cut(s) 543
EcoRI GAATTC 2 cut(s) 340, 548
EcoRII CCWGG 2 cut(s) 249, 568
EcoT14I CCWWGG 3 cut(s) 105, 345, 407
ErhI CCWWGG 3 cut(s) 105, 345, 407
FaeI CATG 5 cut(s) 179, 613, 619, 683, 733
FalI AAGNNNNNCTT 2 cut(s) 354, 386
FaqI GGGAC 1 cut(s) 76
FatI CATG 5 cut(s) 175, 609, 615, 679, 729
Fnu4HI GCNGC 4 cut(s) 111, 530, 645, 648
FokI GGATG 2 cut(s) 208, 538
Fsp4HI GCNGC 4 cut(s) 111, 530, 645, 648
FspBI CTAG 4 cut(s) 306, 533, 720, 774
GlaI GCGC 1 cut(s) 324
GluI GCNGC 4 cut(s) 111, 530, 645, 648
GsaI CCCAGC 1 cut(s) 217
GsuI CTGGAG 1 cut(s) 37
HaeIII GGCC 2 cut(s) 132, 545
HhaI GCGC 1 cut(s) 325
Hin1II CATG 5 cut(s) 179, 613, 619, 683, 733
Hin6I GCGC 1 cut(s) 323
HinP1I GCGC 1 cut(s) 323
HinfI GANTC 3 cut(s) 101, 367, 761
HphI GGTGA 1 cut(s) 9
Hpy166II GTNNAC 1 cut(s) 588
Hpy188I TCNGA 4 cut(s) 159, 298, 361, 751
Hpy188III TCNNGA 3 cut(s) 54, 306, 610
Hpy8I GTNNAC 1 cut(s) 588
HpyAV CCTTC 2 cut(s) 632, 789
HpyCH4III ACNGT 1 cut(s) 125
HpyCH4V TGCA 3 cut(s) 283, 529, 683
HpyF10VI GCNNNNNNNGC 1 cut(s) 56
HpyF3I CTNAG 3 cut(s) 12, 72, 114
Hsp92II CATG 5 cut(s) 179, 613, 619, 683, 733
HspAI GCGC 1 cut(s) 323
Kzo9I GATC 2 cut(s) 31, 82
LguI GCTCTTC 1 cut(s) 570
LmnI GCTCC 1 cut(s) 710
LpnPI CCDG 9 cut(s) 67, 227, 236, 242, 263, 299, 470, 555, 582
Lsp1109I GCAGC 4 cut(s) 97, 541, 656, 659
LweI GCATC 1 cut(s) 516
MabI ACCWGGT 1 cut(s) 249
MaeI CTAG 4 cut(s) 306, 533, 720, 774
MaeIII GTNAC 5 cut(s) 15, 117, 125, 208, 754
MalI GATC 2 cut(s) 33, 84
MboI GATC 2 cut(s) 31, 82
MboII GAAGA 6 cut(s) 92, 257, 374, 484, 557, 634
MflI RGATCY 2 cut(s) 31, 82
MhlI GDGCHC 1 cut(s) 565
MluCI AATT 4 cut(s) 134, 340, 355, 548
MlyI GAGTC 1 cut(s) 110
MroXI GAANNNNTTC 1 cut(s) 366
MseI TTAA 3 cut(s) 459, 513, 692
MslI CAYNNNNRTG 1 cut(s) 614
MspR9I CCNGG 2 cut(s) 251, 570
Mva1269I GAATGC 1 cut(s) 315
MvaI CCWGG 2 cut(s) 251, 570
MwoI GCNNNNNNNGC 1 cut(s) 56
NdeII GATC 2 cut(s) 31, 82
NheI GCTAGC 1 cut(s) 719
NlaIII CATG 5 cut(s) 179, 613, 619, 683, 733
NlaIV GGNNCC 1 cut(s) 600
NmeAIII GCCGAG 1 cut(s) 521
NmuCI GTSAC 3 cut(s) 15, 125, 754
PagI TCATGA 1 cut(s) 609
PciSI GCTCTTC 1 cut(s) 570
PctI GAATGC 1 cut(s) 315
PdmI GAANNNNTTC 1 cut(s) 366
PfeI GAWTC 2 cut(s) 367, 761
PfoI TCCNGGA 1 cut(s) 568
PkrI GCNGC 4 cut(s) 112, 531, 646, 649
PleI GAGTC 1 cut(s) 109
PpsI GAGTC 1 cut(s) 109
Psp6I CCWGG 2 cut(s) 249, 568
PspFI CCCAGC 1 cut(s) 213
PspGI CCWGG 2 cut(s) 249, 568
PspN4I GGNNCC 1 cut(s) 600
PspPI GGNCC 1 cut(s) 179
PsuI RGATCY 2 cut(s) 31, 82
RsaI GTAC 3 cut(s) 390, 405, 440
RsaNI GTAC 3 cut(s) 389, 404, 439
RseI CAYNNNNRTG 1 cut(s) 614
SapI GCTCTTC 1 cut(s) 570
SaqAI TTAA 3 cut(s) 459, 513, 692
SatI GCNGC 4 cut(s) 111, 530, 645, 648
Sau3AI GATC 2 cut(s) 31, 82
Sau96I GGNCC 1 cut(s) 179
SchI GAGTC 1 cut(s) 110
ScrFI CCNGG 2 cut(s) 251, 570
SduI GDGCHC 1 cut(s) 565
SetI ASST 9 cut(s) 22, 61, 78, 237, 252, 423, 534, 542, 652
SexAI ACCWGGT 1 cut(s) 249
SfaNI GCATC 1 cut(s) 516
SinI GGWCC 1 cut(s) 179
SmiMI CAYNNNNRTG 1 cut(s) 614
SmlI CTYRAG 2 cut(s) 86, 98
SmoI CTYRAG 2 cut(s) 86, 98
Sse9I AATT 4 cut(s) 134, 340, 355, 548
SsiI CCGC 3 cut(s) 48, 317, 553
SspMI CTAG 4 cut(s) 306, 533, 720, 774
StyD4I CCNGG 2 cut(s) 249, 568
StyI CCWWGG 3 cut(s) 105, 345, 407
TaaI ACNGT 1 cut(s) 125
TasI AATT 4 cut(s) 134, 340, 355, 548
TatI WGTACW 2 cut(s) 388, 438
TfiI GAWTC 2 cut(s) 367, 761
Tru1I TTAA 3 cut(s) 459, 513, 692
Tru9I TTAA 3 cut(s) 459, 513, 692
TscAI CASTG 1 cut(s) 130
TseFI GTSAC 3 cut(s) 15, 125, 754
TseI GCWGC 4 cut(s) 110, 529, 644, 647
Tsp45I GTSAC 3 cut(s) 15, 125, 754
TspDTI ATGAA 5 cut(s) 164, 393, 626, 635, 651
TspGWI ACGGA 3 cut(s) 42, 344, 773
TspRI CASTG 1 cut(s) 130
VpaK11BI GGWCC 1 cut(s) 179
XapI RAATTY 3 cut(s) 340, 355, 548
XbaI TCTAGA 1 cut(s) 305
XmnI GAANNNNTTC 1 cut(s) 366
XspI CTAG 4 cut(s) 306, 533, 720, 774
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.