Rh3DG337000

DNA repair metallo-beta-lactamase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3D
OG0001198
Physical Location & Seq
Reverse (-)
37507570 .. 37519638
12069 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3DG337000.1

Sequence Viewer

Length: 699 bp
ATGTCGATAGAAATGCCCAAAGGGCTCCCCTTTTCAGTTGATACATGGAGTCCTTCTTCAAAGAGAAAGAGGCACCATTTCTTAACTCACGCCCACAAAGACCACTCCACTGGGATCTCCTCCCACTTTTCTTACCCGATTTACTCTACCCATCTCACCAAAACCGTCCTTCAACACTACCTCAAGCTTGATGAATCTTTGTTTGTGGGCATTAAAGTTGGGCAATCTGTAGCTATTGATGACCCGGATGGAGCCTTCGCTGATACGGCTTTCGATGCCAATCACTGTCGTGGTATCTATCTTTCATGCCCAAGCTGTTTTCATCGTGCTAAGCCTCTCCCTTCTGCTCAAGCTGGTTGTTTACCAACTTTGGCCACAATACCAGTCTGGATAGGTCTATACCAAGCTCTTTCGAATGTGGCAAATGAGATGGGAGACTCAGCTATTGCTCAGCTTACAAATGAGACACGTATGTCTCATGGCATTGTCAATGTTGATTACAAGGGTCTTCTTCAAGTGAAAGAGACTTTGCAGAAAGATTTAGGGAGAGAACCAAATAAGTGTGAACTAGCTGAGGCAACAAGTATGAGTGTGGTTCAAGTGAAAAAACACTTGGAGATCGGTCGAGCTGCCAGAAACAAAGTCATCAAGGTTGCAAGTTACAAGGATTGCAGAAGGATTGCAAGTTACAAGGGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DRMBL Lactamase_B_2

Protein Analysis

232

Amino Acids

25.62

Weight (kDa)

9.07

Isoelectric Point (pI)

41.23

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Sigma70_r3 PF04539 171 - 210 7.2e-06 Sigma-70 region 3
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 472
AccB1I GGYRCC 1 cut(s) 72
AclWI GGATC 1 cut(s) 122
AcoI YGGCCR 1 cut(s) 372
AflIII ACRYGT 1 cut(s) 467
AgsI TTSAA 4 cut(s) 60, 173, 515, 599
AjuI GAANNNNNNNTTGG 2 cut(s) 596, 628
AleI CACNNNNGTG 1 cut(s) 288
AluBI AGCT 9 cut(s) 187, 233, 315, 353, 407, 443, 454, 572, 629
AluI AGCT 9 cut(s) 187, 233, 315, 353, 407, 443, 454, 572, 629
Alw26I GTCTC 4 cut(s) 429, 458, 480, 518
AlwI GGATC 1 cut(s) 122
AoxI GGCC 1 cut(s) 372
ApeKI GCWGC 1 cut(s) 629
AsuC2I CCSGG 1 cut(s) 245
AsuHPI GGTGA 1 cut(s) 148
AsuII TTCGAA 1 cut(s) 413
BalI TGGCCA 1 cut(s) 374
BanI GGYRCC 1 cut(s) 72
BanII GRGCYC 1 cut(s) 27
BbsI GAAGAC 1 cut(s) 500
BbvCI CCTCAGC 1 cut(s) 573
BbvI GCAGC 1 cut(s) 616
BccI CCATC 3 cut(s) 159, 242, 424
BceAI ACGGC 1 cut(s) 282
BcgI CGANNNNNNTGC 1 cut(s) 29
BcnI CCSGG 1 cut(s) 245
BcoDI GTCTC 4 cut(s) 429, 458, 480, 518
BfaI CTAG 2 cut(s) 569, 697
BfmI CTRYAG 1 cut(s) 228
BglI GCCNNNNNGGC 1 cut(s) 22
BisI GCNGC 1 cut(s) 630
BlpI GCTNAGC 2 cut(s) 330, 450
BlsI GCNGC 1 cut(s) 631
Bme1390I CCNGG 1 cut(s) 245
BmiI GGNNCC 3 cut(s) 26, 74, 253
BmrFI CCNGG 1 cut(s) 245
BmrI ACTGGG 1 cut(s) 120
BmsI GCATC 1 cut(s) 265
BmuI ACTGGG 1 cut(s) 120
BpiI GAAGAC 1 cut(s) 500
Bpu10I CCTNAGC 1 cut(s) 573
Bpu1102I GCTNAGC 2 cut(s) 330, 450
Bpu14I TTCGAA 1 cut(s) 413
BpuEI CTTGAG 2 cut(s) 167, 333
BpuMI CCSGG 1 cut(s) 245
BsaAI YACGTR 1 cut(s) 470
BsaBI GATNNNNATC 1 cut(s) 279
Bse1I ACTGG 2 cut(s) 115, 383
Bse8I GATNNNNATC 1 cut(s) 279
BseGI GGATG 1 cut(s) 253
BseJI GATNNNNATC 1 cut(s) 279
BseMII CTCAG 3 cut(s) 453, 464, 564
BseNI ACTGG 2 cut(s) 115, 383
BseRI GAGGAG 1 cut(s) 109
BseXI GCAGC 1 cut(s) 616
Bsh1285I CGRYCG 1 cut(s) 625
BshFI GGCC 1 cut(s) 374
BshNI GGYRCC 1 cut(s) 72
BsiEI CGRYCG 1 cut(s) 625
BsiSI CCGG 1 cut(s) 245
BsmAI GTCTC 4 cut(s) 429, 458, 480, 518
BsnI GGCC 1 cut(s) 374
Bsp119I TTCGAA 1 cut(s) 413
Bsp1286I GDGCHC 1 cut(s) 27
Bsp143I GATC 2 cut(s) 114, 618
Bsp1720I GCTNAGC 2 cut(s) 330, 450
BspANI GGCC 1 cut(s) 374
BspCNI CTCAG 3 cut(s) 452, 463, 565
BspLI GGNNCC 3 cut(s) 26, 74, 253
BspPI GGATC 1 cut(s) 122
BspT104I TTCGAA 1 cut(s) 413
BspT107I GGYRCC 1 cut(s) 72
BsrI ACTGG 2 cut(s) 115, 383
BssMI GATC 2 cut(s) 114, 618
Bst4CI ACNGT 2 cut(s) 166, 287
BstBAI YACGTR 1 cut(s) 470
BstBI TTCGAA 1 cut(s) 413
BstDEI CTNAG 4 cut(s) 330, 439, 450, 573
BstF5I GGATG 1 cut(s) 253
BstKTI GATC 2 cut(s) 117, 621
BstMAI GTCTC 4 cut(s) 429, 458, 480, 518
BstMBI GATC 2 cut(s) 114, 618
BstMCI CGRYCG 1 cut(s) 625
BstMWI GCNNNNNNNGC 3 cut(s) 22, 266, 275
BstSCI CCNGG 1 cut(s) 243
BstSFI CTRYAG 1 cut(s) 228
BstV1I GCAGC 1 cut(s) 616
BstV2I GAAGAC 1 cut(s) 500
BstX2I RGATCY 1 cut(s) 114
BstXI CCANNNNNNTGG 1 cut(s) 110
BstYI RGATCY 1 cut(s) 114
BsuRI GGCC 1 cut(s) 374
BtsCI GGATG 1 cut(s) 253
BtsIMutI CAGTG 2 cut(s) 108, 283
CviAII CATG 3 cut(s) 45, 306, 479
DdeI CTNAG 4 cut(s) 330, 439, 450, 573
DpnI GATC 2 cut(s) 116, 620
DpnII GATC 2 cut(s) 114, 618
DrdI GACNNNNNNGTC 1 cut(s) 472
DseDI GACNNNNNNGTC 1 cut(s) 472
EaeI YGGCCR 1 cut(s) 372
Eco24I GRGCYC 1 cut(s) 27
EcoT38I GRGCYC 1 cut(s) 27
FaeI CATG 3 cut(s) 48, 309, 482
FaiI YATR 6 cut(s) 46, 307, 400, 473, 480, 587
FatI CATG 3 cut(s) 44, 305, 478
Fnu4HI GCNGC 1 cut(s) 630
FokI GGATG 1 cut(s) 260
FriOI GRGCYC 1 cut(s) 27
Fsp4HI GCNGC 1 cut(s) 630
FspBI CTAG 2 cut(s) 569, 697
GluI GCNGC 1 cut(s) 630
HaeIII GGCC 1 cut(s) 374
HapII CCGG 1 cut(s) 245
Hin1II CATG 3 cut(s) 48, 309, 482
HindIII AAGCTT 1 cut(s) 185
HinfI GANTC 3 cut(s) 49, 194, 437
HpaII CCGG 1 cut(s) 245
HphI GGTGA 1 cut(s) 148
Hpy166II GTNNAC 2 cut(s) 362, 566
Hpy188III TCNNGA 1 cut(s) 388
Hpy8I GTNNAC 2 cut(s) 362, 566
HpyAV CCTTC 5 cut(s) 63, 179, 265, 351, 669
HpyCH4III ACNGT 2 cut(s) 166, 287
HpyCH4IV ACGT 1 cut(s) 469
HpyCH4V TGCA 4 cut(s) 532, 656, 672, 683
HpyF10VI GCNNNNNNNGC 3 cut(s) 22, 266, 275
HpyF3I CTNAG 4 cut(s) 330, 439, 450, 573
HpySE526I ACGT 1 cut(s) 469
Hsp92II CATG 3 cut(s) 48, 309, 482
Kzo9I GATC 2 cut(s) 114, 618
LmnI GCTCC 2 cut(s) 30, 251
LpnPI CCDG 6 cut(s) 96, 258, 339, 373, 396, 646
Lsp1109I GCAGC 1 cut(s) 616
LweI GCATC 1 cut(s) 265
MaeI CTAG 2 cut(s) 569, 697
MaeII ACGT 1 cut(s) 469
MaeIII GTNAC 2 cut(s) 659, 686
MalI GATC 2 cut(s) 116, 620
MboI GATC 2 cut(s) 114, 618
MboII GAAGA 3 cut(s) 48, 500, 503
MflI RGATCY 1 cut(s) 114
MhlI GDGCHC 1 cut(s) 27
MlsI TGGCCA 1 cut(s) 374
MluNI TGGCCA 1 cut(s) 374
MlyI GAGTC 2 cut(s) 58, 431
MnlI CCTC 5 cut(s) 63, 130, 191, 345, 568
Mox20I TGGCCA 1 cut(s) 374
MscI TGGCCA 1 cut(s) 374
MseI TTAA 2 cut(s) 83, 213
MslI CAYNNNNRTG 1 cut(s) 288
Msp20I TGGCCA 1 cut(s) 374
MspI CCGG 1 cut(s) 245
MspR9I CCNGG 1 cut(s) 245
MwoI GCNNNNNNNGC 3 cut(s) 22, 266, 275
NciI CCSGG 1 cut(s) 245
NdeII GATC 2 cut(s) 114, 618
NlaIII CATG 3 cut(s) 48, 309, 482
NlaIV GGNNCC 3 cut(s) 26, 74, 253
NspV TTCGAA 1 cut(s) 413
OliI CACNNNNGTG 1 cut(s) 288
PfeI GAWTC 1 cut(s) 194
PkrI GCNGC 1 cut(s) 631
PleI GAGTC 2 cut(s) 57, 431
PpsI GAGTC 2 cut(s) 57, 431
Ppu21I YACGTR 1 cut(s) 470
PspN4I GGNNCC 3 cut(s) 26, 74, 253
PsuI RGATCY 1 cut(s) 114
RseI CAYNNNNRTG 1 cut(s) 288
SaqAI TTAA 2 cut(s) 83, 213
SatI GCNGC 1 cut(s) 630
Sau3AI GATC 2 cut(s) 114, 618
SchI GAGTC 2 cut(s) 58, 431
ScrFI CCNGG 1 cut(s) 245
SduI GDGCHC 1 cut(s) 27
SfaNI GCATC 1 cut(s) 265
SfcI CTRYAG 1 cut(s) 228
SfuI TTCGAA 1 cut(s) 413
SmiMI CAYNNNNRTG 1 cut(s) 288
SmlI CTYRAG 2 cut(s) 182, 348
SmoI CTYRAG 2 cut(s) 182, 348
SspMI CTAG 2 cut(s) 569, 697
StyD4I CCNGG 1 cut(s) 243
TaaI ACNGT 2 cut(s) 166, 287
TaiI ACGT 1 cut(s) 472
TaqI TCGA 4 cut(s) 5, 273, 413, 625
TaqII GACCGA 1 cut(s) 611
TfiI GAWTC 1 cut(s) 194
Tru1I TTAA 2 cut(s) 83, 213
Tru9I TTAA 2 cut(s) 83, 213
TscAI CASTG 2 cut(s) 115, 290
TseI GCWGC 1 cut(s) 629
TspDTI ATGAA 3 cut(s) 207, 294, 311
TspRI CASTG 2 cut(s) 115, 290
XspI CTAG 2 cut(s) 569, 697
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.