Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002942.1

Orthogroup ID

OG0001198

Physical Location & Seq

Genomic Coordinates Reverse (-)

52544 .. 53198

Gene Structure 655 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002942.1_g000020.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 360 bp

atgggcagcgctcagtcacctcctcacggagttcctcgctttgcttccgcctccagagctttcactcatactgagcttgaagatctcacgtccctacttgagtccttggctgctcagtcacacagtgacgaccaatttatctctccctcggtttttcagccgcagacttatttcgggcttcatggtcctcttggggataggatgtttaatttagtaacccagcaacggaaagaccagaagctcacagttgaagacctggtggtagccaaagggacttatgagaagggaacaagggatgatattgaagagttcatatataaattgttggacataaacggcgatggtgttttggggaggtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TLD

Protein Analysis

119

Amino Acids

13.18

Weight (kDa)

5.03

Isoelectric Point (pI)

37.12

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001198)

Species	Orthologous Gene IDs
malus_domestica	MD01G1215400.v1.1
rosa_chinensis	RchiOBHm_Chr2g0159861 RchiOBHm_Chr3g0459421 RchiOBHm_Chr3g0487861 RchiOBHm_Chr3g0492051 RchiOBHm_Chr5g0035771 RchiOBHm_Chr6g0246661 RchiOBHm_Chr7g0202831
rosa_laevigata	RLG00000001369 RLG00000011478 RLG00000020137 RLG00000020475 RLG00000032827 RLG00000034363 RLG00000035497
rosa_multiflora	Rmu_co7998598.1_g000001 Rmu_sc0001163.1_g000040 Rmu_sc0002839.1_g000004 Rmu_sc0002942.1_g000020 Rmu_sc0028697.1_g000001
rosa_roxburghii	Rroxscaffold_3G00225820 Rroxscaffold_5G00370220 Rroxscaffold_7G00168140
rosa_rugosa	Rorug01G0101200 Rorug02G0305900
rosa_samantha	Rh1AG016700 Rh1BG026700 Rh1BG034000 Rh1BG041100 Rh1DG451700 Rh2AG266600 Rh2AG315500 Rh2AG432100 Rh2AG442100 Rh2BG273300 Rh2BG470100 Rh2CG429400 Rh3BG376000 Rh3CG334900 Rh3DG337000 Rh4CG134700 Rh4CG188500 Rh5AG186100 Rh5DG184600 Rh5DG184700 Rh6AG270600 Rh7AG267600 Rh7AG285300 Rh7CG286400 Rh7CG304400 Rh7CG304500 Rh7CG509000 Rh7DG208100 Rh7DG248900 Rh7DG476600
rosa_wichuraiana	Rw1G012800 Rw6G006910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	48, 161
AdeI	CACNNNGTG	1 cut(s)	125
AfeI	AGCGCT	1 cut(s)	10
AfiI	CCNNNNNNNGG	2 cut(s)	26, 225
AgsI	TTSAA	3 cut(s)	80, 251, 305
AjiI	CACGTC	1 cut(s)	90
AjnI	CCWGG	1 cut(s)	255
AluBI	AGCT	3 cut(s)	59, 76, 241
AluI	AGCT	3 cut(s)	59, 76, 241
Aor51HI	AGCGCT	1 cut(s)	10
ApeKI	GCWGC	2 cut(s)	6, 110
AspLEI	GCGC	1 cut(s)	11
AspS9I	GGNCC	1 cut(s)	185
AsuHPI	GGTGA	1 cut(s)	9
AvaII	GGWCC	1 cut(s)	185
BbsI	GAAGAC	1 cut(s)	258
BbvI	GCAGC	2 cut(s)	18, 97
BccI	CCATC	1 cut(s)	335
BceAI	ACGGC	1 cut(s)	352
BciT130I	CCWGG	1 cut(s)	257
BfoI	RGCGCY	1 cut(s)	12
BglII	AGATCT	1 cut(s)	82
BisI	GCNGC	3 cut(s)	7, 111, 161
BlsI	GCNGC	3 cut(s)	8, 112, 162
Bme1390I	CCNGG	1 cut(s)	257
Bme18I	GGWCC	1 cut(s)	185
BmgBI	CACGTC	1 cut(s)	90
BmgT120I	GGNCC	1 cut(s)	185
BmrFI	CCNGG	1 cut(s)	257
BpiI	GAAGAC	1 cut(s)	258
BpmI	CTGGAG	1 cut(s)	37
BpuEI	CTTGAG	1 cut(s)	119
BsaJI	CCNNGG	2 cut(s)	105, 147
Bsc4I	CCNNNNNNNGG	2 cut(s)	26, 225
BseBI	CCWGG	1 cut(s)	257
BseDI	CCNNGG	2 cut(s)	105, 147
BseGI	GGATG	2 cut(s)	207, 301
BseLI	CCNNNNNNNGG	2 cut(s)	26, 225
BseMII	CTCAG	3 cut(s)	26, 63, 128
BseRI	GAGGAG	1 cut(s)	12
BseXI	GCAGC	2 cut(s)	18, 97
BseYI	CCCAGC	1 cut(s)	219
BslFI	GGGAC	2 cut(s)	76, 286
BslI	CCNNNNNNNGG	2 cut(s)	26, 225
BsmFI	GGGAC	2 cut(s)	76, 286
Bsp143I	GATC	1 cut(s)	82
BspACI	CCGC	2 cut(s)	48, 161
BspCNI	CTCAG	3 cut(s)	25, 64, 127
BssECI	CCNNGG	2 cut(s)	105, 147
BssMI	GATC	1 cut(s)	82
BssT1I	CCWWGG	1 cut(s)	105
Bst2UI	CCWGG	1 cut(s)	257
Bst4CI	ACNGT	2 cut(s)	125, 247
Bst6I	CTCTTC	1 cut(s)	300
BstDEI	CTNAG	3 cut(s)	12, 72, 114
BstF5I	GGATG	2 cut(s)	207, 301
BstH2I	RGCGCY	1 cut(s)	12
BstHHI	GCGC	1 cut(s)	11
BstKTI	GATC	1 cut(s)	85
BstMBI	GATC	1 cut(s)	82
BstMWI	GCNNNNNNNGC	1 cut(s)	56
BstNI	CCWGG	1 cut(s)	257
BstSCI	CCNGG	1 cut(s)	255
BstV1I	GCAGC	2 cut(s)	18, 97
BstV2I	GAAGAC	1 cut(s)	258
BstX2I	RGATCY	1 cut(s)	82
BstYI	RGATCY	1 cut(s)	82
BtgZI	GCGATG	1 cut(s)	354
BtrI	CACGTC	1 cut(s)	90
BtsCI	GGATG	2 cut(s)	207, 301
BtsIMutI	CAGTG	1 cut(s)	130
CfoI	GCGC	1 cut(s)	11
Cfr13I	GGNCC	1 cut(s)	185
CsiI	ACCWGGT	1 cut(s)	255
CviAII	CATG	1 cut(s)	182
CviJI	RGCY	7 cut(s)	59, 76, 110, 160, 178, 241, 266
CviKI_1	RGCY	7 cut(s)	59, 76, 110, 160, 178, 241, 266
DdeI	CTNAG	3 cut(s)	12, 72, 114
DpnI	GATC	1 cut(s)	84
DpnII	GATC	1 cut(s)	82
DraIII	CACNNNGTG	1 cut(s)	125
Eam1104I	CTCTTC	1 cut(s)	300
EarI	CTCTTC	1 cut(s)	300
EciI	GGCGGA	1 cut(s)	37
Eco130I	CCWWGG	1 cut(s)	105
Eco47I	GGWCC	1 cut(s)	185
Eco47III	AGCGCT	1 cut(s)	10
EcoRII	CCWGG	1 cut(s)	255
EcoT14I	CCWWGG	1 cut(s)	105
ErhI	CCWWGG	1 cut(s)	105
FaeI	CATG	1 cut(s)	185
FaiI	YATR	7 cut(s)	69, 183, 279, 314, 316, 318, 332
FaqI	GGGAC	2 cut(s)	76, 286
FatI	CATG	1 cut(s)	181
Fnu4HI	GCNGC	3 cut(s)	7, 111, 161
FokI	GGATG	2 cut(s)	214, 308
Fsp4HI	GCNGC	3 cut(s)	7, 111, 161
GlaI	GCGC	1 cut(s)	10
GluI	GCNGC	3 cut(s)	7, 111, 161
GsaI	CCCAGC	1 cut(s)	223
GsuI	CTGGAG	1 cut(s)	37
HaeII	RGCGCY	1 cut(s)	12
HhaI	GCGC	1 cut(s)	11
Hin1II	CATG	1 cut(s)	185
Hin6I	GCGC	1 cut(s)	9
HinP1I	GCGC	1 cut(s)	9
HinfI	GANTC	1 cut(s)	101
HphI	GGTGA	1 cut(s)	9
Hpy188III	TCNNGA	1 cut(s)	54
HpyAV	CCTTC	1 cut(s)	277
HpyCH4III	ACNGT	2 cut(s)	125, 247
HpyCH4IV	ACGT	1 cut(s)	89
HpyF10VI	GCNNNNNNNGC	1 cut(s)	56
HpyF3I	CTNAG	3 cut(s)	12, 72, 114
HpySE526I	ACGT	1 cut(s)	89
Hsp92II	CATG	1 cut(s)	185
HspAI	GCGC	1 cut(s)	9
Kzo9I	GATC	1 cut(s)	82
LpnPI	CCDG	5 cut(s)	67, 233, 242, 248, 269
Lsp1109I	GCAGC	2 cut(s)	18, 97
MabI	ACCWGGT	1 cut(s)	255
MaeII	ACGT	1 cut(s)	89
MaeIII	GTNAC	4 cut(s)	15, 117, 125, 214
MalI	GATC	1 cut(s)	84
MboI	GATC	1 cut(s)	82
MboII	GAAGA	3 cut(s)	92, 263, 317
MflI	RGATCY	1 cut(s)	82
MluCI	AATT	3 cut(s)	134, 208, 320
MlyI	GAGTC	1 cut(s)	110
MmeI	TCCRAC	1 cut(s)	306
MnlI	CCTC	7 cut(s)	30, 33, 45, 61, 157, 198, 348
MseI	TTAA	1 cut(s)	207
MspR9I	CCNGG	1 cut(s)	257
MvaI	CCWGG	1 cut(s)	257
MwoI	GCNNNNNNNGC	1 cut(s)	56
NdeII	GATC	1 cut(s)	82
NlaIII	CATG	1 cut(s)	185
NmuCI	GTSAC	3 cut(s)	15, 117, 125
PkrI	GCNGC	3 cut(s)	8, 112, 162
PleI	GAGTC	1 cut(s)	109
PpsI	GAGTC	1 cut(s)	109
Psp6I	CCWGG	1 cut(s)	255
PspFI	CCCAGC	1 cut(s)	219
PspGI	CCWGG	1 cut(s)	255
PspPI	GGNCC	1 cut(s)	185
PsuI	RGATCY	1 cut(s)	82
SaqAI	TTAA	1 cut(s)	207
SatI	GCNGC	3 cut(s)	7, 111, 161
Sau3AI	GATC	1 cut(s)	82
Sau96I	GGNCC	1 cut(s)	185
SchI	GAGTC	1 cut(s)	110
ScrFI	CCNGG	1 cut(s)	257
SetI	ASST	7 cut(s)	22, 61, 78, 92, 243, 258, 359
SexAI	ACCWGGT	1 cut(s)	255
SinI	GGWCC	1 cut(s)	185
SmlI	CTYRAG	1 cut(s)	98
SmoI	CTYRAG	1 cut(s)	98
Sse9I	AATT	3 cut(s)	134, 208, 320
SsiI	CCGC	2 cut(s)	48, 161
StyD4I	CCNGG	1 cut(s)	255
StyI	CCWWGG	1 cut(s)	105
TaaI	ACNGT	2 cut(s)	125, 247
TaiI	ACGT	1 cut(s)	92
TasI	AATT	3 cut(s)	134, 208, 320
TauI	GCSGC	1 cut(s)	163
Tru1I	TTAA	1 cut(s)	207
Tru9I	TTAA	1 cut(s)	207
TscAI	CASTG	1 cut(s)	130
TseFI	GTSAC	3 cut(s)	15, 117, 125
TseI	GCWGC	2 cut(s)	6, 110
Tsp45I	GTSAC	3 cut(s)	15, 117, 125
TspDTI	ATGAA	2 cut(s)	170, 301
TspGWI	ACGGA	2 cut(s)	42, 241
TspRI	CASTG	1 cut(s)	130
VpaK11BI	GGWCC	1 cut(s)	185

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.