Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0001198

Physical Location & Seq

Genomic Coordinates Forward (+)

21269850 .. 21281308

Gene Structure 11459 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG186100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 387 bp

ATGTCTGCCAAGTTCCCCTCCAAGCCTCTCCCTCCTGCTCAAGCTGGTTGTTTACCAACTTTGGCCACAATACCAGTCTGGATAGGTCTACTCCAAGCTCTTTCGAATGTGGTAAATGAGGATCCTATAATAAGACTGTTCAATTTGATGCCACAGCTTCAAAACGAGATTATGGAACAAGGGAACCCACATGTCAAAAGTATATCATGTACACTGGTAGTGGAGGACACATATGAAGTGTTTGATGAATTTCCTTTGAAAGATGTGATGCTTTGGAATAGAATGATCGATTGGTTTTCCGAGATTGGGCAGTTGAGGAGGCTTTGCTGCAATGCTTGCCACAGCAGAAGCCAGCACAAATCCACAGAAGCTATTATTCCCAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006605 GO:0006612 GO:0006810 GO:0006886 GO:0006996 GO:0008104 GO:0008150 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009657 GO:0009668 GO:0009987 GO:0010027 GO:0015031 GO:0015833 GO:0016020 GO:0016043 GO:0017038 GO:0019904 GO:0022607 GO:0031976 GO:0031984 GO:0032991 GO:0033036 GO:0033365 GO:0034357 GO:0034613 GO:0042651 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0044743 GO:0045036 GO:0045038 GO:0045184 GO:0046907 GO:0050789 GO:0050793 GO:0050794 GO:0051179 GO:0051234 GO:0051259 GO:0051291 GO:0051641 GO:0051649 GO:0055035 GO:0055085 GO:0061024 GO:0065002 GO:0065003 GO:0065007 GO:0070206 GO:0070208 GO:0070727 GO:0071702 GO:0071705 GO:0071806 GO:0071840 GO:0072594 GO:0072596 GO:0072598 GO:0072657 GO:0090150 GO:0090342

KEGG Pathways

Metabolic & Signaling

ko02024 ko03060 ko03070 map02024 map03060 map03070

Pfam Domains

Protein Families

60KD_IMP

Protein Analysis

128

Amino Acids

14.5

Weight (kDa)

5.87

Isoelectric Point (pI)

72.01

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001198)

Species	Orthologous Gene IDs
malus_domestica	MD01G1215400.v1.1
rosa_chinensis	RchiOBHm_Chr2g0159861 RchiOBHm_Chr3g0459421 RchiOBHm_Chr3g0487861 RchiOBHm_Chr3g0492051 RchiOBHm_Chr5g0035771 RchiOBHm_Chr6g0246661 RchiOBHm_Chr7g0202831
rosa_laevigata	RLG00000001369 RLG00000011478 RLG00000020137 RLG00000020475 RLG00000032827 RLG00000034363 RLG00000035497
rosa_multiflora	Rmu_co7998598.1_g000001 Rmu_sc0001163.1_g000040 Rmu_sc0002839.1_g000004 Rmu_sc0002942.1_g000020 Rmu_sc0028697.1_g000001
rosa_roxburghii	Rroxscaffold_3G00225820 Rroxscaffold_5G00370220 Rroxscaffold_7G00168140
rosa_rugosa	Rorug01G0101200 Rorug02G0305900
rosa_samantha	Rh1AG016700 Rh1BG026700 Rh1BG034000 Rh1BG041100 Rh1DG451700 Rh2AG266600 Rh2AG315500 Rh2AG432100 Rh2AG442100 Rh2BG273300 Rh2BG470100 Rh2CG429400 Rh3BG376000 Rh3CG334900 Rh3DG337000 Rh4CG134700 Rh4CG188500 Rh5AG186100 Rh5DG184600 Rh5DG184700 Rh6AG270600 Rh7AG267600 Rh7AG285300 Rh7CG286400 Rh7CG304400 Rh7CG304500 Rh7CG509000 Rh7DG208100 Rh7DG248900 Rh7DG476600
rosa_wichuraiana	Rw1G012800 Rw6G006910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	88
AclWI	GGATC	2 cut(s)	116, 129
AcoI	YGGCCR	1 cut(s)	63
AcsI	RAATTY	1 cut(s)	248
AfaI	GTAC	1 cut(s)	211
AfiI	CCNNNNNNNGG	1 cut(s)	306
AflIII	ACRYGT	1 cut(s)	190
AgsI	TTSAA	3 cut(s)	142, 161, 259
AjuI	GAANNNNNNNTTGG	2 cut(s)	274, 306
AluBI	AGCT	4 cut(s)	44, 98, 157, 371
AluI	AGCT	4 cut(s)	44, 98, 157, 371
AlwI	GGATC	2 cut(s)	116, 129
AoxI	GGCC	1 cut(s)	63
ApeKI	GCWGC	1 cut(s)	327
ApoI	RAATTY	1 cut(s)	248
AsuII	TTCGAA	1 cut(s)	104
BalI	TGGCCA	1 cut(s)	65
BamHI	GGATCC	1 cut(s)	121
BbvI	GCAGC	1 cut(s)	314
BisI	GCNGC	1 cut(s)	328
BlsI	GCNGC	1 cut(s)	329
BmiI	GGNNCC	2 cut(s)	123, 185
BmsI	GCATC	2 cut(s)	138, 258
Bpu14I	TTCGAA	1 cut(s)	104
BpuEI	CTTGAG	1 cut(s)	24
Bsa29I	ATCGAT	1 cut(s)	288
Bsc4I	CCNNNNNNNGG	1 cut(s)	306
Bse1I	ACTGG	2 cut(s)	74, 219
Bse3DI	GCAATG	1 cut(s)	337
BseCI	ATCGAT	1 cut(s)	288
BseLI	CCNNNNNNNGG	1 cut(s)	306
BseMI	GCAATG	1 cut(s)	337
BseNI	ACTGG	2 cut(s)	74, 219
BseRI	GAGGAG	1 cut(s)	331
BseXI	GCAGC	1 cut(s)	314
BshFI	GGCC	1 cut(s)	65
BshVI	ATCGAT	1 cut(s)	288
BslI	CCNNNNNNNGG	1 cut(s)	306
BsnI	GGCC	1 cut(s)	65
Bsp119I	TTCGAA	1 cut(s)	104
Bsp1407I	TGTACA	1 cut(s)	209
Bsp143I	GATC	2 cut(s)	121, 285
BspANI	GGCC	1 cut(s)	65
BspDI	ATCGAT	1 cut(s)	288
BspLI	GGNNCC	2 cut(s)	123, 185
BspPI	GGATC	2 cut(s)	116, 129
BspT104I	TTCGAA	1 cut(s)	104
BsrDI	GCAATG	1 cut(s)	337
BsrGI	TGTACA	1 cut(s)	209
BsrI	ACTGG	2 cut(s)	74, 219
BssMI	GATC	2 cut(s)	121, 285
Bst4CI	ACNGT	1 cut(s)	138
BstAPI	GCANNNNNTGC	1 cut(s)	336
BstAUI	TGTACA	1 cut(s)	209
BstBI	TTCGAA	1 cut(s)	104
BstC8I	GCNNGC	2 cut(s)	337, 353
BstKTI	GATC	2 cut(s)	124, 288
BstMBI	GATC	2 cut(s)	121, 285
BstMWI	GCNNNNNNNGC	1 cut(s)	336
BstNSI	RCATGY	1 cut(s)	194
BstV1I	GCAGC	1 cut(s)	314
BstX2I	RGATCY	1 cut(s)	121
BstYI	RGATCY	1 cut(s)	121
Bsu15I	ATCGAT	1 cut(s)	288
BsuRI	GGCC	1 cut(s)	65
BsuTUI	ATCGAT	1 cut(s)	288
BtsIMutI	CAGTG	1 cut(s)	212
Cac8I	GCNNGC	2 cut(s)	337, 353
ClaI	ATCGAT	1 cut(s)	288
Csp6I	GTAC	1 cut(s)	210
CviAII	CATG	2 cut(s)	191, 207
CviJI	RGCY	8 cut(s)	25, 44, 65, 98, 157, 322, 351, 371
CviKI_1	RGCY	8 cut(s)	25, 44, 65, 98, 157, 322, 351, 371
CviQI	GTAC	1 cut(s)	210
DpnI	GATC	2 cut(s)	123, 287
DpnII	GATC	2 cut(s)	121, 285
EaeI	YGGCCR	1 cut(s)	63
FaeI	CATG	2 cut(s)	194, 210
FaiI	YATR	7 cut(s)	128, 173, 192, 203, 208, 232, 234
FatI	CATG	2 cut(s)	190, 206
FauNDI	CATATG	1 cut(s)	232
FblI	GTMKAC	1 cut(s)	88
Fnu4HI	GCNGC	1 cut(s)	328
Fsp4HI	GCNGC	1 cut(s)	328
GluI	GCNGC	1 cut(s)	328
HaeIII	GGCC	1 cut(s)	65
Hin1II	CATG	2 cut(s)	194, 210
Hpy166II	GTNNAC	3 cut(s)	53, 89, 212
Hpy188I	TCNGA	1 cut(s)	301
Hpy188III	TCNNGA	1 cut(s)	79
Hpy8I	GTNNAC	3 cut(s)	53, 89, 212
HpyCH4III	ACNGT	1 cut(s)	138
HpyCH4V	TGCA	1 cut(s)	330
HpyF10VI	GCNNNNNNNGC	1 cut(s)	336
Hsp92II	CATG	2 cut(s)	194, 210
Kzo9I	GATC	2 cut(s)	121, 285
LpnPI	CCDG	6 cut(s)	30, 48, 64, 87, 200, 365
Lsp1109I	GCAGC	1 cut(s)	314
LweI	GCATC	2 cut(s)	138, 258
MalI	GATC	2 cut(s)	123, 287
MboI	GATC	2 cut(s)	121, 285
MflI	RGATCY	1 cut(s)	121
MlsI	TGGCCA	1 cut(s)	65
MluCI	AATT	2 cut(s)	142, 248
MluNI	TGGCCA	1 cut(s)	65
MnlI	CCTC	7 cut(s)	28, 36, 42, 112, 217, 309, 312
Mox20I	TGGCCA	1 cut(s)	65
MscI	TGGCCA	1 cut(s)	65
Msp20I	TGGCCA	1 cut(s)	65
MwoI	GCNNNNNNNGC	1 cut(s)	336
NdeI	CATATG	1 cut(s)	232
NdeII	GATC	2 cut(s)	121, 285
NlaIII	CATG	2 cut(s)	194, 210
NlaIV	GGNNCC	2 cut(s)	123, 185
NspI	RCATGY	1 cut(s)	194
NspV	TTCGAA	1 cut(s)	104
PciI	ACATGT	1 cut(s)	190
PkrI	GCNGC	1 cut(s)	329
PscI	ACATGT	1 cut(s)	190
PspN4I	GGNNCC	2 cut(s)	123, 185
PsuI	RGATCY	1 cut(s)	121
RsaI	GTAC	1 cut(s)	211
RsaNI	GTAC	1 cut(s)	210
SatI	GCNGC	1 cut(s)	328
Sau3AI	GATC	2 cut(s)	121, 285
SetI	ASST	5 cut(s)	46, 88, 100, 159, 373
SfaNI	GCATC	2 cut(s)	138, 258
SfuI	TTCGAA	1 cut(s)	104
SmlI	CTYRAG	1 cut(s)	39
SmoI	CTYRAG	1 cut(s)	39
Sse9I	AATT	2 cut(s)	142, 248
TaaI	ACNGT	1 cut(s)	138
TaqI	TCGA	2 cut(s)	104, 288
TasI	AATT	2 cut(s)	142, 248
TatI	WGTACW	1 cut(s)	209
TscAI	CASTG	1 cut(s)	219
TseI	GCWGC	1 cut(s)	327
TspDTI	ATGAA	2 cut(s)	249, 261
TspRI	CASTG	1 cut(s)	219
XapI	RAATTY	1 cut(s)	248
XceI	RCATGY	1 cut(s)	194
XmiI	GTMKAC	1 cut(s)	88

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.