Rroxscaffold_3G00225820

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0001198
Physical Location & Seq
Reverse (-)
9137354 .. 9141685
4332 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00225820.1

Sequence Viewer

Length: 207 bp
ATGGAGGATAGAGAAAGCACGCAGATGAGAAAGAATTCGAGGAGGAGAGAGAAAACAGATCTGGGATTTCTCTCTCCTCCATTGCTAACGATGCGGGGTATGGGTAGAGCTCCTAGTGGCGGAACCTCTCTTTTCAATCATCAAGTTCTCTCTGGGCCTCACTGGCTGAGCATCTTGCCTAGTTTCATGCGTATGGCAAGGGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

68

Amino Acids

7.73

Weight (kDa)

11.71

Isoelectric Point (pI)

54.52

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 94, 120
AcsI RAATTY 1 cut(s) 34
AfiI CCNNNNNNNGG 1 cut(s) 119
AgsI TTSAA 1 cut(s) 136
AluBI AGCT 1 cut(s) 110
AluI AGCT 1 cut(s) 110
Alw21I GWGCWC 1 cut(s) 112
AoxI GGCC 1 cut(s) 155
ApoI RAATTY 1 cut(s) 34
Asp700I GAANNNNTTC 1 cut(s) 34
AspS9I GGNCC 1 cut(s) 155
BanII GRGCYC 1 cut(s) 112
Bbv12I GWGCWC 1 cut(s) 112
BfaI CTAG 2 cut(s) 114, 180
BglI GCCNNNNNGGC 1 cut(s) 163
BglII AGATCT 1 cut(s) 58
BlpI GCTNAGC 1 cut(s) 167
BmgT120I GGNCC 1 cut(s) 155
BmiI GGNNCC 1 cut(s) 124
BmsI GCATC 2 cut(s) 81, 180
Bpu1102I GCTNAGC 1 cut(s) 167
Bsc4I CCNNNNNNNGG 1 cut(s) 119
Bse1I ACTGG 1 cut(s) 167
Bse3DI GCAATG 1 cut(s) 80
BseLI CCNNNNNNNGG 1 cut(s) 119
BseMI GCAATG 1 cut(s) 80
BseMII CTCAG 1 cut(s) 158
BseNI ACTGG 1 cut(s) 167
BseRI GAGGAG 3 cut(s) 55, 58, 66
BshFI GGCC 1 cut(s) 157
BsiHKAI GWGCWC 1 cut(s) 112
BslI CCNNNNNNNGG 1 cut(s) 119
BsnI GGCC 1 cut(s) 157
Bsp1286I GDGCHC 1 cut(s) 112
Bsp143I GATC 1 cut(s) 58
Bsp1720I GCTNAGC 1 cut(s) 167
BspACI CCGC 2 cut(s) 94, 120
BspANI GGCC 1 cut(s) 157
BspCNI CTCAG 1 cut(s) 159
BspLI GGNNCC 1 cut(s) 124
BsrDI GCAATG 1 cut(s) 80
BsrI ACTGG 1 cut(s) 167
BssMI GATC 1 cut(s) 58
BstC8I GCNNGC 1 cut(s) 20
BstDEI CTNAG 1 cut(s) 167
BstKTI GATC 1 cut(s) 61
BstMBI GATC 1 cut(s) 58
BstMWI GCNNNNNNNGC 2 cut(s) 91, 163
BstX2I RGATCY 1 cut(s) 58
BstYI RGATCY 1 cut(s) 58
BsuRI GGCC 1 cut(s) 157
BtsIMutI CAGTG 1 cut(s) 160
Cac8I GCNNGC 1 cut(s) 20
Cfr13I GGNCC 1 cut(s) 155
CviAII CATG 1 cut(s) 187
CviJI RGCY 4 cut(s) 110, 157, 166, 203
CviKI_1 RGCY 4 cut(s) 110, 157, 166, 203
DdeI CTNAG 1 cut(s) 167
DpnI GATC 1 cut(s) 60
DpnII GATC 1 cut(s) 58
EciI GGCGGA 1 cut(s) 135
Ecl136II GAGCTC 1 cut(s) 110
Eco24I GRGCYC 1 cut(s) 112
Eco53kI GAGCTC 1 cut(s) 110
EcoICRI GAGCTC 1 cut(s) 110
EcoRI GAATTC 1 cut(s) 34
EcoT38I GRGCYC 1 cut(s) 112
FaeI CATG 1 cut(s) 190
FaiI YATR 3 cut(s) 101, 188, 194
FatI CATG 1 cut(s) 186
FauI CCCGC 1 cut(s) 87
FriOI GRGCYC 1 cut(s) 112
FspBI CTAG 2 cut(s) 114, 180
HaeIII GGCC 1 cut(s) 157
Hin1II CATG 1 cut(s) 190
HpyF10VI GCNNNNNNNGC 2 cut(s) 91, 163
HpyF3I CTNAG 1 cut(s) 167
Hsp92II CATG 1 cut(s) 190
Kzo9I GATC 1 cut(s) 58
LmnI GCTCC 1 cut(s) 115
LpnPI CCDG 3 cut(s) 47, 138, 148
LweI GCATC 2 cut(s) 81, 180
MaeI CTAG 2 cut(s) 114, 180
MalI GATC 1 cut(s) 60
MboI GATC 1 cut(s) 58
MflI RGATCY 1 cut(s) 58
MhlI GDGCHC 1 cut(s) 112
MluCI AATT 1 cut(s) 34
MnlI CCTC 5 cut(s) 33, 36, 87, 136, 168
MroXI GAANNNNTTC 1 cut(s) 34
MslI CAYNNNNRTG 2 cut(s) 23, 191
MwoI GCNNNNNNNGC 2 cut(s) 91, 163
NdeII GATC 1 cut(s) 58
NlaIII CATG 1 cut(s) 190
NlaIV GGNNCC 1 cut(s) 124
PdmI GAANNNNTTC 1 cut(s) 34
Psp124BI GAGCTC 1 cut(s) 112
PspN4I GGNNCC 1 cut(s) 124
PspPI GGNCC 1 cut(s) 155
PsuI RGATCY 1 cut(s) 58
RseI CAYNNNNRTG 2 cut(s) 23, 191
SacI GAGCTC 1 cut(s) 112
Sau3AI GATC 1 cut(s) 58
Sau96I GGNCC 1 cut(s) 155
SduI GDGCHC 1 cut(s) 112
SetI ASST 2 cut(s) 112, 128
SfaNI GCATC 2 cut(s) 81, 180
SmiMI CAYNNNNRTG 2 cut(s) 23, 191
Sse9I AATT 1 cut(s) 34
SsiI CCGC 2 cut(s) 94, 120
SspMI CTAG 2 cut(s) 114, 180
SstI GAGCTC 1 cut(s) 112
TaqI TCGA 1 cut(s) 38
TasI AATT 1 cut(s) 34
TscAI CASTG 1 cut(s) 167
TspDTI ATGAA 1 cut(s) 175
TspRI CASTG 1 cut(s) 167
XapI RAATTY 1 cut(s) 34
XmnI GAANNNNTTC 1 cut(s) 34
XspI CTAG 2 cut(s) 114, 180
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.