Rh2CG429400

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0001198
Physical Location & Seq
Reverse (-)
58304147 .. 58316543
12397 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG429400.1

Sequence Viewer

Length: 705 bp
ATGGAGGAGAGACCTCAAAATGAGGTGGACGAGGTGGAAAGAGAGCCAAAAAGCAGGAAAAAAGCTGCAAGAGCAGTTGCTGTGGTTGCAGCCAGGGAAGAAAGGAATGAATCTTTTAGAATCTCTAATAGAAGTTCAAATTCAACCCCTGCAGAAGATGATATTCCAGAAGGCCAAGCTACATCAAACCCAGAAAAGAAACTTTACTTCAGGTACTGTGAAATTTTGAGGTATTTAGGTTTTTTTCCTTTCATATTGTGGTTTTCTATTTTTGGATTAACGTCGGGGAAAGATGCAAGGGGCTTTTGGCTTAGAAGACCACAGCAGCTAACAAACATAAGGACAAGGATACTTAGAAAGACTTTTCTTCTTGTCCACATAATCAGGTGGTTTGGAGGCTCCTTTGTGCCGAGTTTTGTGACTTCTCTACTTCTCCTTTGGTTGTTTGCTAATGTAGGCCAGTTTCGCATTCATCTCATACCAAAATTCAGCGAAATTGTATATAGGTCATATTGGCATGGTGGTTCTGGTATTACTCCAATGCTTCAGGTCATTGACGCTACACTAAAAAATCTTGATGACACAACCAAGGGCCAGCGACAAGTGTCAGAAGGAGAAGAGGAAGCATGCACTTATCCTACATTTTCAAAGGAGCAAGCAAGTGCACTAGTGTTGCCCACTGCCACATTAGTCAATTCGTCCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

234

Amino Acids

26.83

Weight (kDa)

9.27

Isoelectric Point (pI)

55.99

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 3 cut(s) 139, 222, 485
AcuI CTGAAG 2 cut(s) 193, 530
AfaI GTAC 1 cut(s) 215
AgsI TTSAA 3 cut(s) 138, 144, 648
AhlI ACTAGT 1 cut(s) 667
AjnI CCWGG 1 cut(s) 92
AluBI AGCT 3 cut(s) 65, 179, 328
AluI AGCT 3 cut(s) 65, 179, 328
Alw21I GWGCWC 1 cut(s) 667
Alw26I GTCTC 1 cut(s) 4
Alw44I GTGCAC 1 cut(s) 663
AlwNI CAGNNNCTG 2 cut(s) 80, 216
AoxI GGCC 3 cut(s) 172, 457, 592
ApaLI GTGCAC 1 cut(s) 663
ApeKI GCWGC 3 cut(s) 65, 89, 325
ApoI RAATTY 3 cut(s) 139, 222, 485
AspS9I GGNCC 1 cut(s) 592
BaeGI GKGCMC 1 cut(s) 667
BbsI GAAGAC 1 cut(s) 322
Bbv12I GWGCWC 1 cut(s) 667
BbvI GCAGC 3 cut(s) 52, 101, 337
BciT130I CCWGG 1 cut(s) 94
BciVI GTATCC 1 cut(s) 342
BcoDI GTCTC 1 cut(s) 4
BcuI ACTAGT 1 cut(s) 667
BfaI CTAG 1 cut(s) 668
BfmI CTRYAG 1 cut(s) 150
BfuI GTATCC 1 cut(s) 342
BisI GCNGC 3 cut(s) 66, 90, 326
BlsI GCNGC 3 cut(s) 67, 91, 327
Bme1390I CCNGG 1 cut(s) 94
BmgT120I GGNCC 1 cut(s) 592
BmiI GGNNCC 1 cut(s) 400
BmrFI CCNGG 1 cut(s) 94
BmsI GCATC 1 cut(s) 283
BoxI GACNNNNGTC 1 cut(s) 604
BpiI GAAGAC 1 cut(s) 322
BsaI GGTCTC 1 cut(s) 4
BsaJI CCNNGG 2 cut(s) 93, 588
Bse1I ACTGG 1 cut(s) 460
BseBI CCWGG 1 cut(s) 94
BseDI CCNNGG 2 cut(s) 93, 588
BseNI ACTGG 1 cut(s) 460
BseRI GAGGAG 1 cut(s) 20
BseSI GKGCMC 1 cut(s) 667
BseXI GCAGC 3 cut(s) 52, 101, 337
BshFI GGCC 3 cut(s) 174, 459, 594
BsiHKAI GWGCWC 1 cut(s) 667
BsmAI GTCTC 1 cut(s) 4
BsmI GAATGC 1 cut(s) 468
BsnI GGCC 3 cut(s) 174, 459, 594
Bso31I GGTCTC 1 cut(s) 4
Bsp1286I GDGCHC 1 cut(s) 667
BspANI GGCC 3 cut(s) 174, 459, 594
BspLI GGNNCC 1 cut(s) 400
BspMAI CTGCAG 1 cut(s) 154
BspTNI GGTCTC 1 cut(s) 4
BsrI ACTGG 1 cut(s) 460
BssECI CCNNGG 2 cut(s) 93, 588
BssT1I CCWWGG 1 cut(s) 588
Bst2UI CCWGG 1 cut(s) 94
Bst4CI ACNGT 1 cut(s) 218
Bst6I CTCTTC 1 cut(s) 612
BstC8I GCNNGC 3 cut(s) 596, 628, 657
BstDEI CTNAG 2 cut(s) 311, 353
BstMAI GTCTC 1 cut(s) 4
BstMWI GCNNNNNNNGC 3 cut(s) 71, 86, 465
BstNI CCWGG 1 cut(s) 94
BstNSI RCATGY 1 cut(s) 630
BstPAI GACNNNNGTC 1 cut(s) 604
BstSCI CCNGG 1 cut(s) 92
BstSFI CTRYAG 1 cut(s) 150
BstSLI GKGCMC 1 cut(s) 667
BstV1I GCAGC 3 cut(s) 52, 101, 337
BstV2I GAAGAC 1 cut(s) 322
BsuI GTATCC 1 cut(s) 342
BsuRI GGCC 3 cut(s) 174, 459, 594
BtsI GCAGTG 1 cut(s) 678
BtsIMutI CAGTG 1 cut(s) 678
Cac8I GCNNGC 3 cut(s) 596, 628, 657
CaiI CAGNNNCTG 2 cut(s) 80, 216
Cfr13I GGNCC 1 cut(s) 592
CseI GACGC 1 cut(s) 566
Csp6I GTAC 1 cut(s) 214
CviAII CATG 2 cut(s) 518, 627
CviQI GTAC 1 cut(s) 214
DdeI CTNAG 2 cut(s) 311, 353
Eam1104I CTCTTC 1 cut(s) 612
EarI CTCTTC 1 cut(s) 612
Eco130I CCWWGG 1 cut(s) 588
Eco31I GGTCTC 1 cut(s) 4
Eco57I CTGAAG 2 cut(s) 193, 530
EcoRII CCWGG 1 cut(s) 92
EcoT14I CCWWGG 1 cut(s) 588
ErhI CCWWGG 1 cut(s) 588
FaeI CATG 2 cut(s) 521, 630
FaiI YATR 9 cut(s) 254, 338, 380, 479, 502, 504, 511, 519, 628
FatI CATG 2 cut(s) 517, 626
Fnu4HI GCNGC 3 cut(s) 66, 90, 326
Fsp4HI GCNGC 3 cut(s) 66, 90, 326
FspBI CTAG 1 cut(s) 668
GluI GCNGC 3 cut(s) 66, 90, 326
HaeIII GGCC 3 cut(s) 174, 459, 594
HgaI GACGC 1 cut(s) 566
Hin1II CATG 2 cut(s) 521, 630
HinfI GANTC 2 cut(s) 110, 120
Hpy166II GTNNAC 3 cut(s) 28, 376, 665
Hpy188I TCNGA 1 cut(s) 610
Hpy188III TCNNGA 2 cut(s) 167, 575
Hpy8I GTNNAC 3 cut(s) 28, 376, 665
Hpy99I CGWCG 1 cut(s) 286
HpyAV CCTTC 2 cut(s) 164, 605
HpyCH4III ACNGT 1 cut(s) 218
HpyCH4IV ACGT 1 cut(s) 281
HpyCH4V TGCA 6 cut(s) 68, 89, 152, 296, 630, 665
HpyF10VI GCNNNNNNNGC 3 cut(s) 71, 86, 465
HpyF3I CTNAG 2 cut(s) 311, 353
HpySE526I ACGT 1 cut(s) 281
Hsp92II CATG 2 cut(s) 521, 630
LmnI GCTCC 2 cut(s) 404, 652
Lsp1109I GCAGC 3 cut(s) 52, 101, 337
LweI GCATC 1 cut(s) 283
MaeI CTAG 1 cut(s) 668
MaeII ACGT 1 cut(s) 281
MaeIII GTNAC 1 cut(s) 418
MboII GAAGA 5 cut(s) 110, 167, 327, 359, 629
MhlI GDGCHC 1 cut(s) 667
MluCI AATT 5 cut(s) 139, 222, 485, 495, 694
MnlI CCTC 6 cut(s) 16, 24, 25, 222, 389, 613
MseI TTAA 1 cut(s) 278
MspR9I CCNGG 1 cut(s) 94
Mva1269I GAATGC 1 cut(s) 468
MvaI CCWGG 1 cut(s) 94
MwoI GCNNNNNNNGC 3 cut(s) 71, 86, 465
NlaIII CATG 2 cut(s) 521, 630
NlaIV GGNNCC 1 cut(s) 400
NmeAIII GCCGAG 1 cut(s) 435
NmuCI GTSAC 1 cut(s) 418
NspI RCATGY 1 cut(s) 630
PaeI GCATGC 1 cut(s) 630
PctI GAATGC 1 cut(s) 468
PfeI GAWTC 2 cut(s) 110, 120
PkrI GCNGC 3 cut(s) 67, 91, 327
PshAI GACNNNNGTC 1 cut(s) 604
Psp6I CCWGG 1 cut(s) 92
PspGI CCWGG 1 cut(s) 92
PspN4I GGNNCC 1 cut(s) 400
PspPI GGNCC 1 cut(s) 592
PstI CTGCAG 1 cut(s) 154
PstNI CAGNNNCTG 2 cut(s) 80, 216
RsaI GTAC 1 cut(s) 215
RsaNI GTAC 1 cut(s) 214
SaqAI TTAA 1 cut(s) 278
SatI GCNGC 3 cut(s) 66, 90, 326
Sau96I GGNCC 1 cut(s) 592
ScrFI CCNGG 1 cut(s) 94
SduI GDGCHC 1 cut(s) 667
SfaNI GCATC 1 cut(s) 283
SfcI CTRYAG 1 cut(s) 150
SpeI ACTAGT 1 cut(s) 667
SphI GCATGC 1 cut(s) 630
Sse9I AATT 5 cut(s) 139, 222, 485, 495, 694
SspMI CTAG 1 cut(s) 668
StyD4I CCNGG 1 cut(s) 92
StyI CCWWGG 1 cut(s) 588
TaaI ACNGT 1 cut(s) 218
TaiI ACGT 1 cut(s) 284
TasI AATT 5 cut(s) 139, 222, 485, 495, 694
TfiI GAWTC 2 cut(s) 110, 120
Tru1I TTAA 1 cut(s) 278
Tru9I TTAA 1 cut(s) 278
TscAI CASTG 1 cut(s) 685
TseFI GTSAC 1 cut(s) 418
TseI GCWGC 3 cut(s) 65, 89, 325
Tsp45I GTSAC 1 cut(s) 418
TspDTI ATGAA 3 cut(s) 123, 241, 461
TspRI CASTG 1 cut(s) 685
VneI GTGCAC 1 cut(s) 663
XapI RAATTY 3 cut(s) 139, 222, 485
XceI RCATGY 1 cut(s) 630
XspI CTAG 1 cut(s) 668
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.