RLG00000034363

domain in TBC and LysM domain containing proteins

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0001198
Physical Location & Seq
Forward (+)
41504230 .. 41506424
2195 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000034363

Sequence Viewer

Length: 654 bp
ATGGGCAACGCTCAGTCACCTCCTCATGGAGATCCTCGCTTTGCTTCAGCCTCCAGAGCTTTCACTCATATTGAGCTTGAAGATCTCAAGTCCCTACTTGAGTCCTTGGCTGCTCAGTCACACAATGACGACCAATTTATCTCTCCCTCAGTTTTTCAGACTTATTTGGGGCTTCATGGTCCTCTTGGGGATAAGATGTTTGATTTAGTAACCCAGCAGCGGAAAGACCAGAAGCTCACATTTGAAGACCTAGTGGTAGCCAAAGGGACTTATGAGAAGGGAACAAGGGATGATATTGAACAGTTCATATATAAATTGTTGGACATAAACGGCGATGGTGTTTTGGGGAGGTTCTCAAATATGAGAAATTGTAAAATGTTTTACCAGAGTTGCCCTAATAATTGTTGGCTAATGTGGCTACAACTTCCGGGACTTCTCTCTTTGTCCACCAAGTTGGTGCCAACTATCATGAACATGATGAAGAGATTAGCAGATGAAGGGGCAGCAGCTACTGCAGATAACAATCCTCAAAGAAACCCTGCAGTAGCATTAAAGAGCATAAGCAATGGAGCAAATGCTAGCAGTTCCATGTCATCTACTGCCTCATCAGAAGTGAAGGAATCTAAATACTCTAGTCCTTCAAAACAAGACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TLD

Protein Analysis

218

Amino Acids

23.92

Weight (kDa)

6.09

Isoelectric Point (pI)

53.94

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 457
AciI CCGC 1 cut(s) 220
AclWI GGATC 1 cut(s) 26
AcuI CTGAAG 1 cut(s) 30
AfiI CCNNNNNNNGG 2 cut(s) 26, 219
AgsI TTSAA 4 cut(s) 80, 245, 299, 642
AluBI AGCT 4 cut(s) 59, 76, 235, 509
AluI AGCT 4 cut(s) 59, 76, 235, 509
AlwI GGATC 1 cut(s) 26
AlwNI CAGNNNCTG 1 cut(s) 512
ApeKI GCWGC 4 cut(s) 110, 217, 503, 506
AspS9I GGNCC 1 cut(s) 179
AsuC2I CCSGG 1 cut(s) 429
AsuHPI GGTGA 1 cut(s) 9
AsuNHI GCTAGC 1 cut(s) 578
AvaII GGWCC 1 cut(s) 179
BanI GGYRCC 1 cut(s) 457
BbsI GAAGAC 1 cut(s) 252
BbvI GCAGC 4 cut(s) 97, 229, 515, 518
BccI CCATC 1 cut(s) 329
BceAI ACGGC 1 cut(s) 346
BcnI CCSGG 1 cut(s) 429
BfaI CTAG 3 cut(s) 251, 579, 633
BfmI CTRYAG 2 cut(s) 513, 540
BglII AGATCT 1 cut(s) 82
BisI GCNGC 4 cut(s) 111, 218, 504, 507
BlsI GCNGC 4 cut(s) 112, 219, 505, 508
Bme1390I CCNGG 1 cut(s) 429
Bme18I GGWCC 1 cut(s) 179
BmgT120I GGNCC 1 cut(s) 179
BmiI GGNNCC 1 cut(s) 459
BmrFI CCNGG 1 cut(s) 429
BmtI GCTAGC 1 cut(s) 582
BpiI GAAGAC 1 cut(s) 252
BpmI CTGGAG 1 cut(s) 37
BpuEI CTTGAG 2 cut(s) 71, 119
BpuMI CCSGG 1 cut(s) 429
BsaBI GATNNNNATC 1 cut(s) 522
BsaJI CCNNGG 1 cut(s) 105
Bsc4I CCNNNNNNNGG 2 cut(s) 26, 219
Bse3DI GCAATG 1 cut(s) 571
Bse8I GATNNNNATC 1 cut(s) 522
BseDI CCNNGG 1 cut(s) 105
BseGI GGATG 1 cut(s) 295
BseJI GATNNNNATC 1 cut(s) 522
BseLI CCNNNNNNNGG 2 cut(s) 26, 219
BseMI GCAATG 1 cut(s) 571
BseMII CTCAG 3 cut(s) 26, 128, 162
BseRI GAGGAG 1 cut(s) 12
BseXI GCAGC 4 cut(s) 97, 229, 515, 518
BseYI CCCAGC 1 cut(s) 213
BshNI GGYRCC 1 cut(s) 457
BsiSI CCGG 1 cut(s) 428
BslFI GGGAC 3 cut(s) 76, 280, 444
BslI CCNNNNNNNGG 2 cut(s) 26, 219
BsmFI GGGAC 3 cut(s) 76, 280, 444
Bsp143I GATC 2 cut(s) 31, 82
BspACI CCGC 1 cut(s) 220
BspCNI CTCAG 3 cut(s) 25, 127, 161
BspHI TCATGA 1 cut(s) 468
BspLI GGNNCC 1 cut(s) 459
BspMAI CTGCAG 2 cut(s) 517, 544
BspOI GCTAGC 1 cut(s) 582
BspPI GGATC 1 cut(s) 26
BspT107I GGYRCC 1 cut(s) 457
BsrDI GCAATG 1 cut(s) 571
BssECI CCNNGG 1 cut(s) 105
BssMI GATC 2 cut(s) 31, 82
BssT1I CCWWGG 1 cut(s) 105
Bst4CI ACNGT 1 cut(s) 303
Bst6I CTCTTC 1 cut(s) 476
BstAPI GCANNNNNTGC 1 cut(s) 512
BstC8I GCNNGC 1 cut(s) 580
BstDEI CTNAG 3 cut(s) 12, 114, 148
BstF5I GGATG 1 cut(s) 295
BstKTI GATC 2 cut(s) 34, 85
BstMBI GATC 2 cut(s) 31, 82
BstMWI GCNNNNNNNGC 3 cut(s) 56, 415, 512
BstSCI CCNGG 1 cut(s) 427
BstSFI CTRYAG 2 cut(s) 513, 540
BstV1I GCAGC 4 cut(s) 97, 229, 515, 518
BstV2I GAAGAC 1 cut(s) 252
BstX2I RGATCY 2 cut(s) 31, 82
BstXI CCANNNNNNTGG 1 cut(s) 454
BstYI RGATCY 2 cut(s) 31, 82
BtgZI GCGATG 1 cut(s) 348
BtsCI GGATG 1 cut(s) 295
Cac8I GCNNGC 1 cut(s) 580
CaiI CAGNNNCTG 1 cut(s) 512
CciI TCATGA 1 cut(s) 468
Cfr13I GGNCC 1 cut(s) 179
CviAII CATG 5 cut(s) 26, 176, 469, 475, 589
DdeI CTNAG 3 cut(s) 12, 114, 148
DpnI GATC 2 cut(s) 33, 84
DpnII GATC 2 cut(s) 31, 82
Eam1104I CTCTTC 1 cut(s) 476
EarI CTCTTC 1 cut(s) 476
Eco130I CCWWGG 1 cut(s) 105
Eco47I GGWCC 1 cut(s) 179
Eco57I CTGAAG 1 cut(s) 30
EcoT14I CCWWGG 1 cut(s) 105
ErhI CCWWGG 1 cut(s) 105
FaeI CATG 5 cut(s) 29, 179, 472, 478, 592
FaqI GGGAC 3 cut(s) 76, 280, 444
FatI CATG 5 cut(s) 25, 175, 468, 474, 588
Fnu4HI GCNGC 4 cut(s) 111, 218, 504, 507
FokI GGATG 1 cut(s) 302
Fsp4HI GCNGC 4 cut(s) 111, 218, 504, 507
FspBI CTAG 3 cut(s) 251, 579, 633
GluI GCNGC 4 cut(s) 111, 218, 504, 507
GsaI CCCAGC 1 cut(s) 217
GsuI CTGGAG 1 cut(s) 37
HapII CCGG 1 cut(s) 428
Hin1II CATG 5 cut(s) 29, 179, 472, 478, 592
HinfI GANTC 2 cut(s) 101, 620
HpaII CCGG 1 cut(s) 428
HphI GGTGA 1 cut(s) 9
Hpy166II GTNNAC 1 cut(s) 447
Hpy188I TCNGA 2 cut(s) 159, 610
Hpy188III TCNNGA 2 cut(s) 54, 469
Hpy8I GTNNAC 1 cut(s) 447
HpyAV CCTTC 4 cut(s) 271, 491, 610, 648
HpyCH4III ACNGT 1 cut(s) 303
HpyCH4V TGCA 2 cut(s) 515, 542
HpyF10VI GCNNNNNNNGC 3 cut(s) 56, 415, 512
HpyF3I CTNAG 3 cut(s) 12, 114, 148
Hsp92II CATG 5 cut(s) 29, 179, 472, 478, 592
Kzo9I GATC 2 cut(s) 31, 82
LmnI GCTCC 1 cut(s) 569
LpnPI CCDG 6 cut(s) 67, 227, 242, 398, 441, 552
Lsp1109I GCAGC 4 cut(s) 97, 229, 515, 518
MaeI CTAG 3 cut(s) 251, 579, 633
MaeIII GTNAC 3 cut(s) 15, 117, 208
MalI GATC 2 cut(s) 33, 84
MboI GATC 2 cut(s) 31, 82
MboII GAAGA 3 cut(s) 92, 257, 493
MflI RGATCY 2 cut(s) 31, 82
MluCI AATT 4 cut(s) 134, 314, 367, 400
MlyI GAGTC 1 cut(s) 110
MmeI TCCRAC 1 cut(s) 300
MnlI CCTC 9 cut(s) 30, 33, 45, 61, 157, 192, 342, 537, 613
MseI TTAA 1 cut(s) 551
MslI CAYNNNNRTG 1 cut(s) 473
MspA1I CMGCKG 1 cut(s) 220
MspI CCGG 1 cut(s) 428
MspR9I CCNGG 1 cut(s) 429
MwoI GCNNNNNNNGC 3 cut(s) 56, 415, 512
NciI CCSGG 1 cut(s) 429
NdeII GATC 2 cut(s) 31, 82
NheI GCTAGC 1 cut(s) 578
NlaIII CATG 5 cut(s) 29, 179, 472, 478, 592
NlaIV GGNNCC 1 cut(s) 459
NmuCI GTSAC 2 cut(s) 15, 117
PagI TCATGA 1 cut(s) 468
PfeI GAWTC 1 cut(s) 620
PfoI TCCNGGA 1 cut(s) 427
PkrI GCNGC 4 cut(s) 112, 219, 505, 508
PleI GAGTC 1 cut(s) 109
PpsI GAGTC 1 cut(s) 109
PspFI CCCAGC 1 cut(s) 213
PspN4I GGNNCC 1 cut(s) 459
PspPI GGNCC 1 cut(s) 179
PstI CTGCAG 2 cut(s) 517, 544
PstNI CAGNNNCTG 1 cut(s) 512
PsuI RGATCY 2 cut(s) 31, 82
RseI CAYNNNNRTG 1 cut(s) 473
SaqAI TTAA 1 cut(s) 551
SatI GCNGC 4 cut(s) 111, 218, 504, 507
Sau3AI GATC 2 cut(s) 31, 82
Sau96I GGNCC 1 cut(s) 179
SchI GAGTC 1 cut(s) 110
ScrFI CCNGG 1 cut(s) 429
SetI ASST 7 cut(s) 22, 61, 78, 237, 252, 353, 511
SfcI CTRYAG 2 cut(s) 513, 540
SinI GGWCC 1 cut(s) 179
SmiMI CAYNNNNRTG 1 cut(s) 473
SmlI CTYRAG 2 cut(s) 86, 98
SmoI CTYRAG 2 cut(s) 86, 98
Sse9I AATT 4 cut(s) 134, 314, 367, 400
SsiI CCGC 1 cut(s) 220
SspMI CTAG 3 cut(s) 251, 579, 633
StyD4I CCNGG 1 cut(s) 427
StyI CCWWGG 1 cut(s) 105
TaaI ACNGT 1 cut(s) 303
TasI AATT 4 cut(s) 134, 314, 367, 400
TfiI GAWTC 1 cut(s) 620
Tru1I TTAA 1 cut(s) 551
Tru9I TTAA 1 cut(s) 551
TseFI GTSAC 2 cut(s) 15, 117
TseI GCWGC 4 cut(s) 110, 217, 503, 506
Tsp45I GTSAC 2 cut(s) 15, 117
TspDTI ATGAA 5 cut(s) 164, 295, 485, 494, 510
VpaK11BI GGWCC 1 cut(s) 179
XspI CTAG 3 cut(s) 251, 579, 633
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.