Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4C

Orthogroup ID

OG0001198

Physical Location & Seq

Genomic Coordinates Reverse (-)

26594399 .. 26595830

Gene Structure 1432 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4CG134700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 462 bp

ATGGGCAACCCTCAGTCACCTCCTCACGGAGATCCTCGCTTTGCTTCCGCCTCCAGAGCTTTCACTCATACTGAGCTTGAAGATCTCAAGTCCCTACTTGAGTCCTTGGTTGCTCAGTCACACAGTGATGGCCAATTTATCTCTCCCTCGGTTTTTCAGGATATATCGGGCTTTGAGCGTAAGAGTTGGATCAACACAGAGAACTGCAAAATCATTATTCAAGACTTACAGCTTCCGGGACTTCTCTCTTTGTCCACAAAGTTGGTGCCAACTATCATGAACATGATGAAGAGATTAGCAGATGAAGGGGCAGCAGCTACTGCGGATAACAATCCTCAAAGAAACCCTGCAGTAGCATTAAAGAGCATAAGCAATGGAGCAAATGCTAGCAGTTCCATGTCATCTACTGCCTCATCGGAAGTGACGGAATCTAAATACTCTAGTCCTTCAAAACAAGAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0000902 GO:0001882 GO:0001883 GO:0003674 GO:0005488 GO:0005525 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005783 GO:0005886 GO:0006810 GO:0006888 GO:0006996 GO:0007010 GO:0007275 GO:0008150 GO:0009653 GO:0009826 GO:0009832 GO:0009888 GO:0009932 GO:0009987 GO:0010015 GO:0010053 GO:0012505 GO:0016020 GO:0016043 GO:0016049 GO:0016192 GO:0017076 GO:0019001 GO:0022622 GO:0030029 GO:0030036 GO:0030154 GO:0031090 GO:0032501 GO:0032502 GO:0032549 GO:0032550 GO:0032553 GO:0032555 GO:0032561 GO:0032989 GO:0035639 GO:0036094 GO:0040007 GO:0042546 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044085 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046907 GO:0048193 GO:0048364 GO:0048589 GO:0048731 GO:0048856 GO:0048869 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0060560 GO:0071554 GO:0071669 GO:0071840 GO:0071944 GO:0090558 GO:0090627 GO:0097159 GO:0097367 GO:0098588 GO:0098805 GO:0099402 GO:1901265 GO:1901363 GO:1905392

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RHD3

Protein Analysis

153

Amino Acids

16.41

Weight (kDa)

5.6

Isoelectric Point (pI)

53.81

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001198)

Species	Orthologous Gene IDs
malus_domestica	MD01G1215400.v1.1
rosa_chinensis	RchiOBHm_Chr2g0159861 RchiOBHm_Chr3g0459421 RchiOBHm_Chr3g0487861 RchiOBHm_Chr3g0492051 RchiOBHm_Chr5g0035771 RchiOBHm_Chr6g0246661 RchiOBHm_Chr7g0202831
rosa_laevigata	RLG00000001369 RLG00000011478 RLG00000020137 RLG00000020475 RLG00000032827 RLG00000034363 RLG00000035497
rosa_multiflora	Rmu_co7998598.1_g000001 Rmu_sc0001163.1_g000040 Rmu_sc0002839.1_g000004 Rmu_sc0002942.1_g000020 Rmu_sc0028697.1_g000001
rosa_roxburghii	Rroxscaffold_3G00225820 Rroxscaffold_5G00370220 Rroxscaffold_7G00168140
rosa_rugosa	Rorug01G0101200 Rorug02G0305900
rosa_samantha	Rh1AG016700 Rh1BG026700 Rh1BG034000 Rh1BG041100 Rh1DG451700 Rh2AG266600 Rh2AG315500 Rh2AG432100 Rh2AG442100 Rh2BG273300 Rh2BG470100 Rh2CG429400 Rh3BG376000 Rh3CG334900 Rh3DG337000 Rh4CG134700 Rh4CG188500 Rh5AG186100 Rh5DG184600 Rh5DG184700 Rh6AG270600 Rh7AG267600 Rh7AG285300 Rh7CG286400 Rh7CG304400 Rh7CG304500 Rh7CG509000 Rh7DG208100 Rh7DG248900 Rh7DG476600
rosa_wichuraiana	Rw1G012800 Rw6G006910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	265
AciI	CCGC	2 cut(s)	48, 323
AclWI	GGATC	2 cut(s)	26, 197
AcoI	YGGCCR	1 cut(s)	130
AdeI	CACNNNGTG	1 cut(s)	125
AfiI	CCNNNNNNNGG	1 cut(s)	26
AgsI	TTSAA	3 cut(s)	80, 221, 450
AluBI	AGCT	4 cut(s)	59, 76, 232, 317
AluI	AGCT	4 cut(s)	59, 76, 232, 317
AlwI	GGATC	2 cut(s)	26, 197
AlwNI	CAGNNNCTG	1 cut(s)	320
AoxI	GGCC	1 cut(s)	130
ApeKI	GCWGC	2 cut(s)	311, 314
AsuC2I	CCSGG	1 cut(s)	237
AsuHPI	GGTGA	1 cut(s)	9
AsuNHI	GCTAGC	1 cut(s)	386
BalI	TGGCCA	1 cut(s)	132
BanI	GGYRCC	1 cut(s)	265
BbvI	GCAGC	2 cut(s)	323, 326
BccI	CCATC	1 cut(s)	122
BcnI	CCSGG	1 cut(s)	237
BfaI	CTAG	2 cut(s)	387, 441
BfmI	CTRYAG	1 cut(s)	348
BglII	AGATCT	1 cut(s)	82
BisI	GCNGC	2 cut(s)	312, 315
BlsI	GCNGC	2 cut(s)	313, 316
Bme1390I	CCNGG	1 cut(s)	237
BmiI	GGNNCC	1 cut(s)	267
BmrFI	CCNGG	1 cut(s)	237
BmtI	GCTAGC	1 cut(s)	390
BpmI	CTGGAG	1 cut(s)	37
BpuEI	CTTGAG	2 cut(s)	71, 119
BpuMI	CCSGG	1 cut(s)	237
BsaBI	GATNNNNATC	1 cut(s)	330
BsaJI	CCNNGG	2 cut(s)	105, 147
Bsc4I	CCNNNNNNNGG	1 cut(s)	26
Bse3DI	GCAATG	1 cut(s)	379
Bse8I	GATNNNNATC	1 cut(s)	330
BseDI	CCNNGG	2 cut(s)	105, 147
BseJI	GATNNNNATC	1 cut(s)	330
BseLI	CCNNNNNNNGG	1 cut(s)	26
BseMI	GCAATG	1 cut(s)	379
BseMII	CTCAG	3 cut(s)	26, 63, 128
BseRI	GAGGAG	1 cut(s)	12
BseXI	GCAGC	2 cut(s)	323, 326
BshFI	GGCC	1 cut(s)	132
BshNI	GGYRCC	1 cut(s)	265
BsiSI	CCGG	1 cut(s)	236
BslFI	GGGAC	2 cut(s)	76, 252
BslI	CCNNNNNNNGG	1 cut(s)	26
BsmFI	GGGAC	2 cut(s)	76, 252
BsnI	GGCC	1 cut(s)	132
Bsp143I	GATC	3 cut(s)	31, 82, 189
BspACI	CCGC	2 cut(s)	48, 323
BspANI	GGCC	1 cut(s)	132
BspCNI	CTCAG	3 cut(s)	25, 64, 127
BspHI	TCATGA	1 cut(s)	276
BspLI	GGNNCC	1 cut(s)	267
BspMAI	CTGCAG	1 cut(s)	352
BspOI	GCTAGC	1 cut(s)	390
BspPI	GGATC	2 cut(s)	26, 197
BspT107I	GGYRCC	1 cut(s)	265
BsrDI	GCAATG	1 cut(s)	379
BssECI	CCNNGG	2 cut(s)	105, 147
BssMI	GATC	3 cut(s)	31, 82, 189
BssT1I	CCWWGG	1 cut(s)	105
Bst4CI	ACNGT	1 cut(s)	125
Bst6I	CTCTTC	1 cut(s)	284
BstAPI	GCANNNNNTGC	1 cut(s)	320
BstC8I	GCNNGC	1 cut(s)	388
BstDEI	CTNAG	3 cut(s)	12, 72, 114
BstKTI	GATC	3 cut(s)	34, 85, 192
BstMBI	GATC	3 cut(s)	31, 82, 189
BstMWI	GCNNNNNNNGC	2 cut(s)	56, 320
BstSCI	CCNGG	1 cut(s)	235
BstSFI	CTRYAG	1 cut(s)	348
BstV1I	GCAGC	2 cut(s)	323, 326
BstX2I	RGATCY	2 cut(s)	31, 82
BstXI	CCANNNNNNTGG	1 cut(s)	262
BstYI	RGATCY	2 cut(s)	31, 82
BsuRI	GGCC	1 cut(s)	132
BtsIMutI	CAGTG	1 cut(s)	130
Cac8I	GCNNGC	1 cut(s)	388
CaiI	CAGNNNCTG	1 cut(s)	320
CciI	TCATGA	1 cut(s)	276
CviAII	CATG	3 cut(s)	277, 283, 397
CviJI	RGCY	6 cut(s)	59, 76, 132, 171, 232, 317
CviKI_1	RGCY	6 cut(s)	59, 76, 132, 171, 232, 317
DdeI	CTNAG	3 cut(s)	12, 72, 114
DpnI	GATC	3 cut(s)	33, 84, 191
DpnII	GATC	3 cut(s)	31, 82, 189
DraIII	CACNNNGTG	1 cut(s)	125
EaeI	YGGCCR	1 cut(s)	130
Eam1104I	CTCTTC	1 cut(s)	284
EarI	CTCTTC	1 cut(s)	284
EciI	GGCGGA	1 cut(s)	37
Eco130I	CCWWGG	1 cut(s)	105
EcoT14I	CCWWGG	1 cut(s)	105
ErhI	CCWWGG	1 cut(s)	105
FaeI	CATG	3 cut(s)	280, 286, 400
FaiI	YATR	6 cut(s)	69, 164, 278, 284, 368, 398
FaqI	GGGAC	2 cut(s)	76, 252
FatI	CATG	3 cut(s)	276, 282, 396
Fnu4HI	GCNGC	2 cut(s)	312, 315
Fsp4HI	GCNGC	2 cut(s)	312, 315
FspBI	CTAG	2 cut(s)	387, 441
GluI	GCNGC	2 cut(s)	312, 315
GsuI	CTGGAG	1 cut(s)	37
HaeIII	GGCC	1 cut(s)	132
HapII	CCGG	1 cut(s)	236
Hin1II	CATG	3 cut(s)	280, 286, 400
HinfI	GANTC	2 cut(s)	101, 428
HpaII	CCGG	1 cut(s)	236
HphI	GGTGA	1 cut(s)	9
Hpy166II	GTNNAC	1 cut(s)	255
Hpy188I	TCNGA	1 cut(s)	418
Hpy188III	TCNNGA	4 cut(s)	54, 158, 221, 277
Hpy8I	GTNNAC	1 cut(s)	255
HpyAV	CCTTC	2 cut(s)	299, 456
HpyCH4III	ACNGT	1 cut(s)	125
HpyCH4V	TGCA	2 cut(s)	207, 350
HpyF10VI	GCNNNNNNNGC	2 cut(s)	56, 320
HpyF3I	CTNAG	3 cut(s)	12, 72, 114
Hsp92II	CATG	3 cut(s)	280, 286, 400
Kzo9I	GATC	3 cut(s)	31, 82, 189
LmnI	GCTCC	1 cut(s)	377
LpnPI	CCDG	4 cut(s)	67, 143, 249, 360
Lsp1109I	GCAGC	2 cut(s)	323, 326
MaeI	CTAG	2 cut(s)	387, 441
MaeIII	GTNAC	3 cut(s)	15, 117, 421
MalI	GATC	3 cut(s)	33, 84, 191
MboI	GATC	3 cut(s)	31, 82, 189
MboII	GAAGA	2 cut(s)	92, 301
MflI	RGATCY	2 cut(s)	31, 82
MlsI	TGGCCA	1 cut(s)	132
MluCI	AATT	1 cut(s)	134
MluNI	TGGCCA	1 cut(s)	132
MlyI	GAGTC	1 cut(s)	110
MmeI	TCCRAC	1 cut(s)	167
MnlI	CCTC	8 cut(s)	21, 30, 33, 45, 61, 157, 345, 421
Mox20I	TGGCCA	1 cut(s)	132
MscI	TGGCCA	1 cut(s)	132
MseI	TTAA	1 cut(s)	359
MslI	CAYNNNNRTG	2 cut(s)	126, 281
Msp20I	TGGCCA	1 cut(s)	132
MspI	CCGG	1 cut(s)	236
MspR9I	CCNGG	1 cut(s)	237
MwoI	GCNNNNNNNGC	2 cut(s)	56, 320
NciI	CCSGG	1 cut(s)	237
NdeII	GATC	3 cut(s)	31, 82, 189
NheI	GCTAGC	1 cut(s)	386
NlaIII	CATG	3 cut(s)	280, 286, 400
NlaIV	GGNNCC	1 cut(s)	267
NmuCI	GTSAC	3 cut(s)	15, 117, 421
PagI	TCATGA	1 cut(s)	276
PfeI	GAWTC	1 cut(s)	428
PfoI	TCCNGGA	1 cut(s)	235
PkrI	GCNGC	2 cut(s)	313, 316
PleI	GAGTC	1 cut(s)	109
PpsI	GAGTC	1 cut(s)	109
PspN4I	GGNNCC	1 cut(s)	267
PstI	CTGCAG	1 cut(s)	352
PstNI	CAGNNNCTG	1 cut(s)	320
PsuI	RGATCY	2 cut(s)	31, 82
RseI	CAYNNNNRTG	2 cut(s)	126, 281
SaqAI	TTAA	1 cut(s)	359
SatI	GCNGC	2 cut(s)	312, 315
Sau3AI	GATC	3 cut(s)	31, 82, 189
SchI	GAGTC	1 cut(s)	110
ScrFI	CCNGG	1 cut(s)	237
SetI	ASST	5 cut(s)	22, 61, 78, 234, 319
SfcI	CTRYAG	1 cut(s)	348
SmiMI	CAYNNNNRTG	2 cut(s)	126, 281
SmlI	CTYRAG	2 cut(s)	86, 98
SmoI	CTYRAG	2 cut(s)	86, 98
Sse9I	AATT	1 cut(s)	134
SsiI	CCGC	2 cut(s)	48, 323
SspMI	CTAG	2 cut(s)	387, 441
StyD4I	CCNGG	1 cut(s)	235
StyI	CCWWGG	1 cut(s)	105
TaaI	ACNGT	1 cut(s)	125
TasI	AATT	1 cut(s)	134
TfiI	GAWTC	1 cut(s)	428
Tru1I	TTAA	1 cut(s)	359
Tru9I	TTAA	1 cut(s)	359
TscAI	CASTG	1 cut(s)	130
TseFI	GTSAC	3 cut(s)	15, 117, 421
TseI	GCWGC	2 cut(s)	311, 314
Tsp45I	GTSAC	3 cut(s)	15, 117, 421
TspDTI	ATGAA	3 cut(s)	293, 302, 318
TspGWI	ACGGA	2 cut(s)	42, 440
TspRI	CASTG	1 cut(s)	130
XspI	CTAG	2 cut(s)	387, 441

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.