Rw6G006910

RNA polymerase sigma factor sigE, chloroplastic

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr6
OG0001198
Physical Location & Seq
Reverse (-)
11034333 .. 11037515
3183 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw6G006910.1

Sequence Viewer

Length: 306 bp
ATGCCACCGCCTGCGTCGTCGCCCGGTTCGCCACCGTCACCGTCGTCGATGTTGTGTGCACCAGGTTTCATTGAGGGTCTTCTTCAAGTGAAAGAGACTTTGCAGAAAGATTTGTGGAGAGAACCAAATAAGGGTGAACTAGCTGAGGCAACAAGTATGAGTGGTTTAAGTGAAAAAAACACTTGGACGATTAAACCTGTAAATGATATATTAGATTGGCTTTCGGCTAATTTTGGGTTTCAGGTAAACTTGTGCTTTAAGTGCCTTTCATTTCACTTATCTTTTTTTTTTCTCACTCACATATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000988 GO:0000990 GO:0003674 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006091 GO:0006139 GO:0006351 GO:0006352 GO:0006355 GO:0006725 GO:0006807 GO:0006950 GO:0006970 GO:0006996 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009314 GO:0009416 GO:0009507 GO:0009536 GO:0009553 GO:0009628 GO:0009637 GO:0009639 GO:0009651 GO:0009657 GO:0009658 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010114 GO:0010207 GO:0010218 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0015979 GO:0016043 GO:0016070 GO:0016987 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0019684 GO:0022607 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032501 GO:0032502 GO:0032774 GO:0033554 GO:0034622 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043254 GO:0043933 GO:0044085 GO:0044087 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044424 GO:0044444 GO:0044464 GO:0045893 GO:0045935 GO:0046483 GO:0048229 GO:0048518 GO:0048522 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051128 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051716 GO:0060255 GO:0065003 GO:0065007 GO:0071214 GO:0071470 GO:0071472 GO:0071478 GO:0071482 GO:0071483 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0097659 GO:0104004 GO:0140110 GO:1901360 GO:1901362 GO:1901576 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2000142 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Sigma70_r2 Sigma70_r3 Sigma70_r4

Protein Analysis

101

Amino Acids

11.17

Weight (kDa)

5.53

Isoelectric Point (pI)

67.67

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 8
AfiI CCNNNNNNNGG 1 cut(s) 131
AgsI TTSAA 1 cut(s) 86
AjnI CCWGG 1 cut(s) 61
AluBI AGCT 1 cut(s) 143
AluI AGCT 1 cut(s) 143
Alw21I GWGCWC 1 cut(s) 61
Alw26I GTCTC 1 cut(s) 89
Alw44I GTGCAC 1 cut(s) 57
ApaLI GTGCAC 1 cut(s) 57
AsuC2I CCSGG 1 cut(s) 24
AsuHPI GGTGA 2 cut(s) 30, 146
BaeGI GKGCMC 1 cut(s) 61
BbsI GAAGAC 1 cut(s) 71
Bbv12I GWGCWC 1 cut(s) 61
BbvCI CCTCAGC 1 cut(s) 144
BciT130I CCWGG 1 cut(s) 63
BcnI CCSGG 1 cut(s) 24
BcoDI GTCTC 1 cut(s) 89
BfaI CTAG 1 cut(s) 140
Bme1390I CCNGG 2 cut(s) 24, 63
BmrFI CCNGG 2 cut(s) 24, 63
BpiI GAAGAC 1 cut(s) 71
Bpu10I CCTNAGC 1 cut(s) 144
BpuMI CCSGG 1 cut(s) 24
Bsc4I CCNNNNNNNGG 1 cut(s) 131
BseBI CCWGG 1 cut(s) 63
BseLI CCNNNNNNNGG 1 cut(s) 131
BseMII CTCAG 1 cut(s) 135
BseSI GKGCMC 1 cut(s) 61
BsiHKAI GWGCWC 1 cut(s) 61
BsiSI CCGG 1 cut(s) 24
BslI CCNNNNNNNGG 1 cut(s) 131
BsmAI GTCTC 1 cut(s) 89
Bsp1286I GDGCHC 1 cut(s) 61
BspACI CCGC 1 cut(s) 8
BspCNI CTCAG 1 cut(s) 136
Bst2UI CCWGG 1 cut(s) 63
Bst4CI ACNGT 2 cut(s) 36, 42
BstC8I GCNNGC 1 cut(s) 12
BstDEI CTNAG 1 cut(s) 144
BstMAI GTCTC 1 cut(s) 89
BstMWI GCNNNNNNNGC 2 cut(s) 28, 261
BstNI CCWGG 1 cut(s) 63
BstSCI CCNGG 2 cut(s) 22, 61
BstSLI GKGCMC 1 cut(s) 61
BstV2I GAAGAC 1 cut(s) 71
Cac8I GCNNGC 1 cut(s) 12
CseI GACGC 1 cut(s) 3
CsiI ACCWGGT 1 cut(s) 61
CviJI RGCY 3 cut(s) 143, 220, 227
CviKI_1 RGCY 3 cut(s) 143, 220, 227
DdeI CTNAG 1 cut(s) 144
EcoRII CCWGG 1 cut(s) 61
FaiI YATR 4 cut(s) 158, 209, 302, 304
FauNDI CATATG 1 cut(s) 302
FspBI CTAG 1 cut(s) 140
HapII CCGG 1 cut(s) 24
HgaI GACGC 1 cut(s) 3
HpaII CCGG 1 cut(s) 24
HphI GGTGA 2 cut(s) 30, 146
Hpy166II GTNNAC 3 cut(s) 59, 137, 247
Hpy8I GTNNAC 3 cut(s) 59, 137, 247
Hpy99I CGWCG 4 cut(s) 19, 22, 46, 49
HpyCH4III ACNGT 2 cut(s) 36, 42
HpyCH4V TGCA 2 cut(s) 59, 103
HpyF10VI GCNNNNNNNGC 2 cut(s) 28, 261
HpyF3I CTNAG 1 cut(s) 144
LpnPI CCDG 6 cut(s) 24, 37, 48, 75, 210, 227
MabI ACCWGGT 1 cut(s) 61
MaeI CTAG 1 cut(s) 140
MaeIII GTNAC 1 cut(s) 36
MboII GAAGA 2 cut(s) 71, 74
MhlI GDGCHC 1 cut(s) 61
MluCI AATT 1 cut(s) 229
MnlI CCTC 2 cut(s) 67, 139
MseI TTAA 3 cut(s) 167, 192, 258
MspI CCGG 1 cut(s) 24
MspR9I CCNGG 2 cut(s) 24, 63
MvaI CCWGG 1 cut(s) 63
MwoI GCNNNNNNNGC 2 cut(s) 28, 261
NciI CCSGG 1 cut(s) 24
NdeI CATATG 1 cut(s) 302
NmuCI GTSAC 1 cut(s) 36
Psp6I CCWGG 1 cut(s) 61
PspGI CCWGG 1 cut(s) 61
SaqAI TTAA 3 cut(s) 167, 192, 258
ScrFI CCNGG 2 cut(s) 24, 63
SduI GDGCHC 1 cut(s) 61
SetI ASST 4 cut(s) 67, 145, 199, 246
SexAI ACCWGGT 1 cut(s) 61
Sse9I AATT 1 cut(s) 229
SsiI CCGC 1 cut(s) 8
SspMI CTAG 1 cut(s) 140
StyD4I CCNGG 2 cut(s) 22, 61
TaaI ACNGT 2 cut(s) 36, 42
TaqI TCGA 1 cut(s) 47
TasI AATT 1 cut(s) 229
Tru1I TTAA 3 cut(s) 167, 192, 258
Tru9I TTAA 3 cut(s) 167, 192, 258
TseFI GTSAC 1 cut(s) 36
Tsp45I GTSAC 1 cut(s) 36
TspDTI ATGAA 2 cut(s) 58, 258
VneI GTGCAC 1 cut(s) 57
XspI CTAG 1 cut(s) 140
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.